ID X98396; SV 1; linear; genomic RNA; STD; VRL; 6101 BP. XX AC X98396; XX DT 17-AUG-1996 (Rel. 49, Created) DT 27-APR-2009 (Rel. 100, Last updated, Version 3) XX DE Rice tungro spherical virus, ORFs 1,2 & 3, strain Phil. 2 XX KW ORF1; ORF2; ORF3. XX OS Rice tungro spherical virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Waikavirus. XX RN [1] RX DOI; 10.1007/BF00366984. RX PUBMED; 9035368. RA Thole V., Hull R.; RT "Rice tungro spherical virus: nucleotide sequence of the 3' genomic half RT and studies on the two small 3' open reading frames"; RL Virus Genes 13(3):239-246(1996). XX RN [2] RP 1-6101 RA Hull R.; RT ; RL Submitted (08-JUN-1996) to the INSDC. RL R. Hull, John Innes Centre, Virus Research, Norwich Research Park, Colney, RL Norwich, NR4 7UH, UK XX RN [3] RX DOI; 10.1006/viro.1998.9225. RX PUBMED; 9683576. RA Thole V., Hull R.; RT "Rice tungro spherical virus polyprotein processing: identification of a RT virus-encoded protease and mutational analysis of putative cleavage sites"; RL Virology 247(1):106-114(1998). XX RN [4] RX PUBMED; 12466496. RA Thole V., Hull R.; RT "Characterization of a protein from Rice tungro spherical virus with serine RT proteinase-like activity"; RL J. Gen. Virol. 83(Pt 12):3179-3186(2002). XX DR MD5; c18f10850a9fb73403bf9aaa7e164e58. XX CC Related sequence: M95497 XX FH Key Location/Qualifiers FH FT source 1..6101 FT /organism="Rice tungro spherical virus" FT /lab_host="Rice" FT /strain="Phil.2" FT /mol_type="genomic RNA" FT /cell_line="TN1" FT /db_xref="taxon:35287" FT CDS <1..4861 FT /codon_start=2 FT /gene="ORF1" FT /db_xref="GOA:Q98645" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR024387" FT /db_xref="UniProtKB/TrEMBL:Q98645" FT /protein_id="CAA67042.1" FT /translation="VPMAAVEAKGKHCTSKYVFSCTNVLNLDDTGDVVTKMAYYRRRNV FT LVKVERDPDVPKNEANPTEGLVFTVLGHDQNCQGDPQFVVKENWDEPFLREVDTEGWRF FT ERVEYRTFLRFLCMYTDAYMYSQEQVLQGIKTFKMNPFAPEPEFAQAQNGEAAECEIVE FT EMQEVPGEAPQEAKELAKIETAPNMDELVEAFNKLRVTPGHLNEILRDGSGCYIDEWAI FT AGPRWLSFHELLPFTCGCHHTRVCDFNIVYNNMCKAVRSQSVHFKYRANQAIKYAYTHK FT LHSQCRYSIDFEKLRECNPLDVFVCVLSKYTADDHSFERRCPKKMNVVRMQRPPVFELK FT MRPPSDSMVVEDDQGQRVFEWPHLYTFLRYRAIEFKDDKGSLTVREDAGADVCPWNEFL FT KLPWLDGDQLKSVLPAHLHRMVQARLEQVEIMEENGNYSGEMRNAIAEIKEYLDQDHQW FT VAALVLVACAVRERRRMTHDKLHRKSFNALDKLDKWYTTTAPKTSKKMKILLAIGASVA FT VAGVAVGAVILLQKTNLFGSKEDEEIEGEEGETQASGRHESDGIVTQHLKRDIRPKMRV FT TYTDHHVAEAHEEKDAEKLRKPGNPARKSYLGLSPGFAERGMGVTYEEHTPLKDALLDE FT SNKVFRRKIVASVESAVKQGGKASKDTVLSQIGEWQDKVKATGVIAARQLEASGSLKKI FT HNLNSRRTSSHVMPGLVVHDGTFERSDEVDAELHRITIDEVKSCPKMIKEGVSTLSVKK FT ASVGMLALQKAESQLSFPFTSRAGVDRDLSMTNLIDTHMAGMSCIIISELGNVFRTFGV FT LRLCGTYVCMPAHYLDEITSEHTLYFVCPSKITQIQLERHRVCLVNGFQETVVWDLGPS FT VPPSRNYIDFIANADDWKNYKATSGALVMSKYSVDSMLQCVHFLDSIELTEANVSVPTS FT YYEANGGIHTIISGLRYRVHCMPGFCGAAIMRADATCYRKIIGMHVSGLRNKCMGYAET FT LTQEHLMQAIETLKETGLLKHIPRGAIGAGEEKLPEHSKKQSLSLEGKGNLGIVGQLPA FT QLVPTSVTKTTICKSMIHGLIGEIKTEPSVLSAWDRRLPFPPGEWDPMKDAVKKYGSYI FT LPFPTEEIQEVENFLIKKFRRKENSRRARNVNSLEVGINGIDGSDFWSPIEMKTSPGYP FT YILKRPSGAQGKKYLFEELEPYPSGRPKYAMKDPELIENYERIKEEVTSGVKPSIMTME FT CLKDERRKLAKIYEKPATRTFTILSPEVNILFRQYFGDFAAMVMSTRREHFSQVGINPE FT SMEWSDLINSLLRVNTKGFAGDYSKFDGIGSPAIYHSIVNVVNAWYDDGEVNARARHSL FT ISSIVHRDGICGDLILRYSQGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSLLSPQGS FT CKDFDTYCKIVAYGDDNVVSVHEEFLDVYNLQTVAAYLSHFGVTYTDGDKNPIHMSKPY FT EDITKMSFLKRGFERVESSGFLWKAPLDKTSIEERLNWIRDCPTPVEALEQNIESALHE FT AAIHGRDYFDDLVQRLNSALKRVMLPPTDISFEECQARWWASVTGDALRAADYSSLVRR FT ASSGHVEFNKKYRDMFRQQDLPLKEILMKSKPVALLDLEV" FT CDS join(5042..5060,5059..5171) FT /gene="ORF2" FT /note="frame shift" FT /db_xref="UniProtKB/TrEMBL:Q98646" FT /protein_id="CAA67043.1" FT /translation="MLGDIARFKRSVSEPTAAERSTLNRLNPHTTADIIGECGQHVI" FT CDS 5364..5612 FT /gene="ORF3" FT /db_xref="GOA:Q98647" FT /db_xref="UniProtKB/TrEMBL:Q98647" FT /protein_id="CAA67044.1" FT /translation="MERFHHPSPMYIVRVSYVYIISFIIFLVVSDPSYSKDTIFVLRWE FT VTLGCELVVEWRLLESLTTIELHRHESHPMHESGGLS" XX SQ Sequence 6101 BP; 1750 A; 1168 C; 1609 G; 1573 T; 1 other; cgtacccatg gcggccgtcg aagcaaaggg caaacactgt accagcaaat atgtattctc 60 gtgcaccaat gttctgaatt tggacgatac tggggatgtg gtaactaaga tggcatacta 120 taggcgacgc aacgttcttg tcaaggttga aagagatcct gatgtcccca agaatgaggc 180 caatcccact gagggcctgg tgtttactgt gctaggccat gatcaaaatt gtcaaggaga 240 tcctcaattt gtggtgaaag agaattggga cgagcctttt ctgcgcgaag tcgatactga 300 aggctggcgg tttgagcgcg ttgaatacag aacgtttcta aggttcttgt gcatgtacac 360 agacgcatat atgtatagcc aggaacaagt gcttcaggga atcaaaacgt tcaagatgaa 420 tccttttgcg cccgagcccg agtttgcgca agcccagaat ggagaggccg ctgagtgcga 480 gatcgttgag gagatgcagg aagtgccagg ggaggcccca caagaagcga aggaacttgc 540 caagattgag actgcaccaa atatggatga actagtagag gcctttaata agctgagagt 600 gactccagga cacctgaacg agattttgag agatggatca ggttgctaca ttgatgagtg 660 ggctatagct ggaccacggt ggttgagctt tcatgagttg ttaccattta cctgtggttg 720 tcatcatact agggtatgcg actttaacat tgtatataat aatatgtgta aagctgttag 780 gagccagagt gtacatttta agtatagagc caatcaggct attaaatatg catatactca 840 taagttgcat tcacagtgta gatatagtat agattttgag aagcttcgtg agtgtaaccc 900 cttggacgtt tttgtttgtg ttttgtccaa gtatacggca gatgaccatt cctttgagcg 960 acgatgtcca aagaagatga atgtggtgag gatgcagagg ccgcctgttt ttgagctcaa 1020 gatgcggccc ccgagtgata gtatggttgt tgaggacgat caaggtcaac gtgtttttga 1080 gtggccccac ttgtacacat ttttgcgata tagggccatc gaatttaagg acgacaaagg 1140 atccctaact gtgagagaag atgctggtgc tgacgtgtgc ccatggaatg aatttctgaa 1200 attgccgtgg ctggatggtg accaactcaa atctgtattg ccagcacatt tacatcggat 1260 ggtacaagca cgtttggaac aggtggagat aatggaagag aatggaaatt acagtggaga 1320 gatgagaaat gcaattgctg aaatcaagga gtatttggac caggatcacc agtgggttgc 1380 tgcgttggtt ttagtggcat gtgctgtgag agagcgacgg agaatgacgc atgataagtt 1440 gcaccggaar agtttcaatg ctctggataa attggataaa tggtatacca caaccgcgcc 1500 caagacttca aagaagatga aaattctatt ggctattggc gcgagtgttg ctgtggctgg 1560 agttgctgtt ggggccgtga ttttactgca gaaaactaat ctgtttggct ccaaagaaga 1620 tgaagagatt gaaggagaag aaggtgagac acaggccagc ggacgacatg agtcagacgg 1680 gatagtgaca cagcacctca aaagagacat tcggccaaaa atgagggtga cttatacaga 1740 ccaccatgtt gctgaggcgc atgaggaaaa agatgccgag aagctacgca agcctggcaa 1800 tccagctaga aagagctatt taggtttgtc gccagggttt gctgaaagag gaatgggcgt 1860 cacatacgaa gagcacacac ctttaaaaga tgcactactt gatgaaagca acaaggtgtt 1920 caggcgcaag atcgtggctt cagtggaaag tgctgtgaaa caaggcggca aggcctcgaa 1980 agatactgtg ttgtcacaaa taggcgaatg gcaagataag gttaaggcca ctggagtaat 2040 agcggctaga cagttggaag cgagtggaag cttgaagaaa attcacaatc tcaactccag 2100 gagaaccagt agccatgtta tgccagggct tgttgttcat gatggcacat ttgaaagatc 2160 tgatgaagtg gatgctgagt tgcaccgtat aactattgat gaagtgaagt cctgcccaaa 2220 aatgatcaag gaaggggttt ccaccctatc agtaaagaaa gcgtcagttg gcatgttggc 2280 actccagaaa gctgagtcgc agttatcatt cccatttaca tcacgtgctg gggttgacag 2340 agatttaagc atgaccaatt tgatcgatac ccacatggca ggaatgagct gcattatcat 2400 aagtgaattg ggcaacgtgt tcaggacttt tggtgtgtta cgcctgtgtg gaacttacgt 2460 gtgtatgcct gcacattacc tggatgaaat aacgagcgaa cacacactgt actttgtgtg 2520 cccaagcaaa atcacacaga ttcaactgga gcgacatcga gtatgcttgg tgaatggatt 2580 tcaagagaca gttgtgtggg atctcggacc ttcagtgcca cccagtcgga attatattga 2640 ctttattgct aatgcagatg actggaagaa ttacaaggca acaagtggag cgctggtcat 2700 gtcaaaatat tcagtggaca gcatgcttca gtgcgtgcat ttcttggaca gtattgagct 2760 gacggaagca aacgtgtcgg tgcccactag ttactatgag gcgaatggag ggatacacac 2820 catcatttct ggtctaaggt atagagttca ttgcatgcca ggcttttgtg gagctgctat 2880 tatgagagct gatgcaactt gctacagaaa gataatagga atgcacgtca gcggtttgcg 2940 caacaagtgt atgggctatg cagaaacatt gactcaggaa catctgatgc aggccattga 3000 aacgctgaaa gaaacgggct tactgaagca cataccacga ggggcaattg gagcaggtga 3060 ggagaagctc ccagagcact ctaagaagca aagtttgtcg cttgagggaa aaggtaatct 3120 tggaattgtc ggtcagctac cagcacaatt ggtgcccaca tctgttacca agaccacgat 3180 ttgcaagagc atgatccatg ggttgattgg cgaaattaaa acagagccct cagttctatc 3240 agcttgggac agacgactgc cgtttccacc tggtgaatgg gatccaatga aagacgcagt 3300 taagaagtat ggttcctata tcttgccatt tccaacggag gagattcaag aagtggaaaa 3360 tttcctgatt aaaaaattta gacggaagga aaattcaaga agagctcgaa atgtgaattc 3420 gttggaagtt ggtattaatg gcatcgacgg ctcagatttc tggtccccaa tagagatgaa 3480 aacgtcacct ggatatccat atatcttgaa aagaccaagt ggtgcgcagg gtaaaaagta 3540 cttgtttgaa gagttggaac cctatccatc aggccggcct aaatatgcca tgaaggaccc 3600 agagttgatt gagaattacg agcgaatcaa agaggaagtg acaagcggcg tgaaacccag 3660 tatcatgaca atggagtgcc tcaaggatga aagaagaaaa ctggcaaaaa tttacgagaa 3720 accagcaact cgtacattca ctattctgtc ccctgaggtc aatattctgt ttagacaata 3780 ttttggggat ttcgcagcca tggtgatgag cacacgacga gaacacttct cccaggtagg 3840 aattaaccca gaaagcatgg agtggtcaga cttgataaac tctttgttga gagtcaatac 3900 caaaggattt gctggcgatt attcaaagtt cgatggcatt ggatcaccag ccatttacca 3960 ttccatagtc aacgtcgtga atgcttggta cgatgacgga gaagttaatg caagagcacg 4020 ccatagtttg atatcctcga tagtacatcg ggatggaatc tgtggtgatc tgatattgag 4080 atattcacag ggaatgcctt ctggttttgc gatgacagtt attttcaatt cctttgtgaa 4140 ctattatttt atggctctag catggatgag cacggttgga tcaagtctcc tgagcccaca 4200 aggcagttgc aaagattttg atacttattg taagattgtc gcatatgggg atgataatgt 4260 tgtatctgtt catgaggaat ttctcgacgt gtacaacttg caaacggttg ctgcctacct 4320 cagtcatttt ggggtcacat atacagatgg agacaaaaac cctatacata tgagtaagcc 4380 gtatgaagac atcactaaga tgagtttctt gaaacgaggc tttgagagag tggagtcttc 4440 tggttttctt tggaaagctc ccctggacaa aacgagtatc gaggagcgtc tgaattggat 4500 tcgggactgt cctacacctg tagaggcgct ggaacaaaat attgagagcg cactgcatga 4560 ggctgccatt catggaagag attattttga tgatttggtg caacgattga atagtgcgct 4620 gaagagagtg atgcttcctc caacggacat ttcattcgag gagtgtcaag cccgatggtg 4680 ggcgagtgtg accggtgatg ccctcagggc tgccgattac tcgtcgctcg tcaggcgggc 4740 aagttctgga catgtggagt tcaataagaa gtaccgggac atgttcagac aacaagattt 4800 gccacttaag gaaatattga tgaaatcaaa accagtggcg cttcttgacc tggaggtgta 4860 atttaaacac ctcctcacac gggcgaagga aaagtctttg agaatgtatc acactagctg 4920 tggtcggttg cgtgatttca aagatgacga gctgtacgtg gtggtgtaac aagtcttagt 4980 aaggaagaag actggagaag tataagtcgg cactcgagcg tccctagttg gggccggggt 5040 gatgctgggg gatattgcgc tttaaacgca gcgtgagcga acccaccgca gctgaaaggt 5100 ctaccctgaa caggttgaat ccacacacaa cagcagatat catcggcgaa tgtggccaac 5160 acgtaatttg attctatgct agtgatgaac tcttcaggac tgagtattgt acctcattag 5220 aggagccggg ggcaaccctt gccgtgcatg gacaccgcac acaaaccttg acacaggttt 5280 taaaatatag gtcagtctat gccggacttg aatggcactg ttatctggta acgtatgtaa 5340 tacttcgcca ataaacactc cagatggaga ggttccatca cccttcaccc atgtatattg 5400 ttagggtgtc gtatgtgtac ataataagtt ttattatttt tcttgttgtg tctgatccaa 5460 gttatagtaa ggataccatt ttcgtgctaa gatgggaagt aacgcttggc tgtgaattag 5520 tggtagagtg gagactctta gagtcactca ccacgattga acttcacagg catgagagtc 5580 accctatgca tgagagtggc ggactaagct aggctttggg gtaataactt tcccaatcgg 5640 ggttgtgctt gtagatgatt taattcatta acaggccccc ttattgtgac ggtgcttacc 5700 caggtacttt caccagtttc attccttaat cggacttctg ggaggggccg tgcccaaagc 5760 acttgctata atttgtttca acccgtggtc acggacactt gacccgtctt tcgagagatg 5820 gaaggcgccc tccttggggt ttttctcttt gtgttgtaaa gtacagagaa gttattgaag 5880 acccctcggg gtttaaaata atttctagct aatgtatata tatattgatg atatatgtta 5940 tgtgaaaatg ttgtgatcgt tatcctatac gacacaccca gtcttgtaaa gctgggaccc 6000 acatcacaca ccaggaagtt gaaaccaatg acgatggtgg cacaatgcca accggttggt 6060 acttacctac tgtgtatctc aagtgtgggg taatagagta t 6101 //