ID X94560; SV 1; linear; genomic RNA; STD; VRL; 3662 BP. XX AC X94560; XX DT 17-JAN-1996 (Rel. 46, Created) DT 16-JUL-1997 (Rel. 52, Last updated, Version 18) XX DE Leek white stripe virus genome (LWSV) XX KW capsid protein; ORF1 gene; ORF2 gene; ORF3 gene; ORF4 gene; ORF5 gene; KW replicase. XX OS Leek white stripe virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Betanecrovirus. XX RN [1] RX DOI; 10.1007/BF01718638. RX PUBMED; 9526544. RA Lot H., Rubino L., Delecolle B., Jacquemond M., Turturo C., Russo M.; RT "Characterization, nucleotide sequence and genome organization of leek RT white stripe virus, a putative new species of the genus Necrovirus"; RL Arch. Virol. 141(12):2375-2386(1996). XX RN [2] RP 1-3662 RA Rubino L.; RT ; RL Submitted (28-DEC-1995) to the INSDC. RL L. Rubino, CNR Centro Virus e Virosi delle Colture Mediterranee, Via RL Amendola 165/A, 70126, Bari, ITALY XX DR MD5; 3192262314b775aecc6bf45c776f5885. DR EuropePMC; PMC112128; 10864632. XX CC Related sequence:- CC Russo, M., Adv. Virus Res., 144, 381-428, 1994 XX FH Key Location/Qualifiers FH FT source 1..3662 FT /organism="Leek white stripe virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:45224" FT CDS 38..658 FT /gene="ORF 1" FT /function="unknown" FT /db_xref="GOA:Q83102" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q83102" FT /protein_id="CAA64247.1" FT /translation="MHTPQCIARFGTTCHTHIRTARLLYVKTTYFQRFLFMFFVYSAVP FT VLFVPILFIAFFHRFFKLQLGFSPEATALMHRFVDLFSRDDEPVITETSCNVDFLPGPE FT SRKENLVAPKRRNHYIVKVAMAAKSQVGLLGNSRANELVYARLCREEMVKHGVRPSHIA FT RMVPLAVDCHCFIPMDEDIMAAEMMRTDVMRSRRKDMGDSHAK" FT CDS 38..2221 FT /transl_except=(pos:656..658,aa:OTHER) FT /gene="ORF 2" FT /product="replicase" FT /db_xref="GOA:Q83103" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q83103" FT /protein_id="CAA64248.1" FT /translation="MHTPQCIARFGTTCHTHIRTARLLYVKTTYFQRFLFMFFVYSAVP FT VLFVPILFIAFFHRFFKLQLGFSPEATALMHRFVDLFSRDDEPVITETSCNVDFLPGPE FT SRKENLVAPKRRNHYIVKVAMAAKSQVGLLGNSRANELVYARLCREEMVKHGVRPSHIA FT RMVPLAVDCHCFIPMDEDIMAAEMMRTDVMRSRRKDMGDSHAKXGGLLTTHGFTTPTWR FT GEPAGLSVVKGPPLSKPRKLYRFTGFGANIRYGVHDHSLGNVRRGLVERVFMVEKSGKL FT EYTPKPTPGAFNQLSRFTRALLPFLTKTTRLTTKEFLGFYTGRKLERYTKASESLEVIS FT FQEKDSWLSTFVKAEKINITAKPDPAPRVIQPRDPRYNVELGRYLRIVKSICSRLLIAL FT FGGRTIFKGINADEAGVEMKEIWDSFVDPIGIGMDASRFDQHISVEALQFEHKMWLEMF FT PVSQRKHLKRLLDLQLHNRGLARCPDGTARYKVDGCRMSGDMNTSSGNCFIMCATVWNW FT CTRLNLKHFRLANNGDDCMVFMERHNEESFRRGLIDYYTGLGFTMKVEETVDVLERVEF FT CQTRPVLVDGSYRMIRNLHQGLSKDLHSLTDLAGVGAAQAWVSAVGEGGRVLNDGVPVL FT GSFYKQFPLGSMPKSGTDMHEHINDAWKYKFGRKGSYQNLQPTPCSRFSFWLAFGILPE FT EQIALEEGFSPISFQHQLEDNGEEASLLVFSRA" FT CDS 2181..2483 FT /gene="ORF 3" FT /function="unknown" FT /db_xref="GOA:Q83104" FT /db_xref="InterPro:IPR035284" FT /db_xref="UniProtKB/TrEMBL:Q83104" FT /protein_id="CAA64249.1" FT /translation="MERRPLCSCFLGHENLPLSPFIACYFLFCFIIMSEPMYRSDDSSS FT SKTRSKRSEGTTAQVASKSAVHKEGDFKMSLEKEGPVISMTVVGDKVEFTQNFNF" FT CDS 2483..2653 FT /gene="ORF 4" FT /function="unknown" FT /db_xref="GOA:Q83105" FT /db_xref="UniProtKB/TrEMBL:Q83105" FT /protein_id="CAA64250.1" FT /translation="MVIVVRESSFPLLAVWIIVIVLVAVIGALLQTPPETINQVFNEDH FT HKTQYINIGKP" FT CDS 2650..3405 FT /gene="ORF 5" FT /product="capsid protein" FT /db_xref="GOA:Q83106" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q83106" FT /protein_id="CAA64251.1" FT /translation="MTTSKKSNNNNKSGKSTPKPNKNRRQSRKGQMVLQTIVEPSARGS FT IYRNVIPPGIFNRDSVNLLSHTELFVGVDSGALGAFVLNGGAIIPSQMTNCNRHAVNFS FT KYSWKYLEFIYIPFVATTFPGQVVLAPNFDRSDANPTSIASLEQYDYAVSTPIWGGSEG FT SRRMHSNAACSAVNVIIETDNFDKVVYPYKTLANFTGLPAVDQNIFAPATMFVATQGGN FT NVAIQLSVGKLYCKYVIEFFNPIDPASNM" XX SQ Sequence 3662 BP; 952 A; 769 C; 874 G; 1067 T; 0 other; gatacctaac cagtgtctcg ttgatcagtg atcaggtatg catactcctc aatgtatcgc 60 acgcttcggc actacatgtc acacacacat ccgcaccgca cgtctccttt atgtcaaaac 120 cacttacttt caacgctttc tttttatgtt ttttgtttat tccgctgttc ctgtgttgtt 180 tgtacccatt cttttcatcg ctttttttca ccggtttttc aagctgcagc tggggttttc 240 ccccgaagct acagccctta tgcataggtt cgtggacctc ttttcacggg acgatgagcc 300 tgtcatcaca gagacttcat gcaatgtaga tttccttcct ggaccagaaa gtaggaaaga 360 aaatcttgta gctcctaaga gaaggaatca ctacattgta aaagtcgcta tggcagcaaa 420 gtcccaagtg gggttactcg gcaattctag ggctaatgag cttgtatatg ccaggttgtg 480 tagggaggag atggttaagc atggcgtaag accatcgcat attgcgcgga tggttccatt 540 ggcggtagac tgtcactgtt ttatccccat ggatgaggat atcatggcag cggagatgat 600 gaggacggat gttatgcgta gcagacgcaa ggacatgggg gattcccatg ccaaataggg 660 gggcctatta accacacatg ggttcaccac tcctacatgg aggggtgaac ctgcgggtct 720 tagtgtggtt aaaggacctc ccttatcaaa accccgtaaa ttgtatcgtt ttacagggtt 780 tggtgccaat atacgatacg gagtgcatga tcactccttg ggtaatgtac ggaggggcct 840 ggtagagcga gttttcatgg ttgagaaatc tggaaagctc gagtacacac caaaacccac 900 ccctggcgca tttaatcaac tatctcggtt cactcgggca ttgttacctt tcttgaccaa 960 gaccaccaga cttacaacca aagaatttct tgggttctat actggtcgca agttagagag 1020 gtatacaaag gcaagtgagt cgttagaggt gatctccttt caggagaaag atagttggtt 1080 gagtacgttt gttaaggctg agaaaataaa tatcacagct aaacccgacc cggctccacg 1140 ggtgatacag cctagggatc ctaggtataa tgtggagttg gggcgctatt tgcgcatagt 1200 gaagagtatc tgttcaaggc tattgatcgc cttatttggt ggtagaacca tatttaaagg 1260 gatcaatgct gacgaggctg gagtggagat gaaggagata tgggactcat ttgttgatcc 1320 tattggcatc gggatggatg ccagtaggtt cgatcaacat atcagtgttg aggctttaca 1380 gtttgaacac aagatgtggc ttgagatgtt cccagtatcg cagaggaagc acctgaaaag 1440 gttgcttgac cttcaactcc acaatcgagg tctagctcgt tgtcctgatg gtactgctag 1500 gtataaggtg gatggatgtc gcatgtccgg tgacatgaat acatccagtg gtaattgctt 1560 cattatgtgt gcaacagttt ggaactggtg cactcgtctt aatcttaagc actttcggct 1620 cgccaacaat ggcgatgatt gcatggtgtt catggagaga cataatgagg agtcattccg 1680 tcgaggtttg atcgattact acactgggtt agggtttacg atgaaagttg aggagacggt 1740 agatgtcctc gagagggtcg agttttgcca aactagacca gtactcgtgg atggtagcta 1800 ccgcatgatc cgcaatttgc atcaaggtct ctcaaaagac ctacattccc taacagacct 1860 agcaggtgtc ggagccgctc aagcttgggt gagtgccgtt ggggagggtg gtagagtgct 1920 taatgatggg gtcccagttt tggggtcctt ctataagcaa tttcctttag gtagcatgcc 1980 taagagcgga actgatatgc acgagcatat caatgatgca tggaaatata agtttggtag 2040 gaaaggttcc tatcaaaact tacaacctac cccctgttcc aggttctcat tttggcttgc 2100 attcgggatt ttgcccgaag aacagattgc cttagaagag gggttttctc ccatttcttt 2160 ccaacatcag ttggaagata atggagagga ggcctctctg ctcgtgtttt ctagggcatg 2220 aaaacttacc actttcacca tttatcgcgt gctattttct cttttgtttt ataatcatgt 2280 ctgagcctat gtatcgttct gatgattctt cgtcatctaa aactaggtcc aagaggtcgg 2340 aggggaccac agcccaagtg gccagcaaga gtgctgttca caaggagggt gactttaaaa 2400 tgtcacttga gaaggaaggt cctgtgattt ccatgactgt tgtcggtgat aaagttgagt 2460 ttacccaaaa ctttaatttt tgatggtgat agtcgtgaga gaatcttcct ttcccctact 2520 tgctgtatgg ataatcgtca ttgtattagt ggcggttatc ggcgcattac ttcaaactcc 2580 tcctgaaacc attaaccaag ttttcaacga agatcatcac aaaactcaat atataaatat 2640 aggcaagcca tgactactag taagaaatct aataataata ataaaagtgg caagtccaca 2700 ccaaaaccaa ataaaaatcg taggcaatca cggaaaggac agatggtgct gcaaaccatt 2760 gttgaaccct ccgccagagg ttctatttat agaaacgtaa ttcccccagg catattcaat 2820 agggacagtg ttaatttact gtcgcatact gaattgtttg ttggggttga ctctggtgca 2880 ttgggagctt ttgtccttaa tggaggagcc atcattccca gtcaaatgac taattgtaac 2940 cgacatgctg ttaatttctc caagtactct tggaaatatt tggaatttat atacattcct 3000 tttgtcgcta caacatttcc tgggcaggtg gtccttgctc ctaattttga tagatccgat 3060 gccaacccta cctcaattgc tagcctcgaa caatatgatt atgcagtttc caccccaatt 3120 tggggtggat ctgagggcag tagacgcatg cacagcaatg ctgcttgctc tgccgttaat 3180 gtaatcattg agactgacaa ttttgataag gttgtttatc cgtacaagac attggccaac 3240 tttactgggt taccagctgt tgaccagaac atctttgctc ctgcaactat gtttgttgcc 3300 acacaaggtg gcaacaatgt cgcaatacaa ctatccgttg gtaagttgta ctgtaagtac 3360 gtaatcgagt tcttcaatcc cattgatcct gcatccaaca tgtagttgga ttttcttatt 3420 ttgtgtgcta ctcgcatacg tacagcgtat gttcacctca cggttttgtt aattacattc 3480 aagtcgaagt tgcatagatc ccgagaacgg gttttaacgg gctcctgtgg tgggagccga 3540 cgctcatcgc ttctgaaatt tgaatggttg tcacaaaaca acatatgatg gctcactaca 3600 acagtagtgg ggggtccagg catatgtccc gcaatactta tagctacctt ttggtagtac 3660 cc 3662 //