ID X86448; SV 2; linear; genomic RNA; STD; VRL; 3911 BP. XX AC X86448; XX DT 17-MAR-2000 (Rel. 63, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Hibiscus chlorotic ringspot virus genomic RNA XX KW coat protein; RNA-dependent RNA polymerase. XX OS Hibiscus chlorotic ringspot virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Betacarmovirus. XX RN [1] RX DOI; 10.1128/JVI.74.7.3149-3155.2000. RX PUBMED; 10708431. RA Huang M., Koh D.C.Y., Weng L., Chang M.L., Yap Y.K., Zhang Y.K., Wong S.M.; RT "Complete nucleotide sequence and genome organization of hibiscus chlorotic RT ringspot virus, a new member of the genus Carmovirus: evidence for the RT presence and expression of two novel open reading frames"; RL J. Virol. 74(7):3149-3155(2000). XX RN [2] RC Sequence revised by Dr. Wong S.K. (04-JUN-1999) RP 1-3911 RA Weng L.; RT ; RL Submitted (21-APR-1995) to the INSDC. RL L. Weng, National University of Singapore, Dept. of Botany, Kent Ridge, RL Singapore 0511, SINGAPORE XX DR MD5; 834aad7352abf0eda9b4d960623ab292. DR EuropePMC; PMC111815; 10708431. DR EuropePMC; PMC3861435; 24336382. XX FH Key Location/Qualifiers FH FT source 1..3911 FT /organism="Hibiscus chlorotic ringspot virus" FT /cultivar="Hibiscus sp." FT /mol_type="genomic RNA" FT /clone="pHCRV-220" FT /db_xref="taxon:53181" FT CDS 31..675 FT /gene="p28" FT /product="P28 protein" FT /db_xref="UniProtKB/TrEMBL:Q9IR84" FT /protein_id="CAA60168.1" FT /translation="MLSHAFSIAFETASLGAALCVAPFAAAVEIITHPRIAPRDPCIAE FT ELCMRDELEVADPTDEEPEACLENISGTSSDKKVSKIKRRHRGKFALHAAIAAKLHFGG FT TPTPTRSNELAVRRWLASYCKERRLVDTHAIQAIALATPLVLTPGAAEITERAILNSAV FT FGMRRAALAEASKPTSLTYQMVFEPHRPRTWLRAWRKVVGLPDFQGYSPVK" FT CDS 31..2238 FT /transl_except=(pos:673..675,aa:OTHER) FT /product="RNA-dependent RNA polymerase" FT /note="amber stop-codon" FT /db_xref="GOA:Q9IR83" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q9IR83" FT /protein_id="CAB81767.1" FT /translation="MLSHAFSIAFETASLGAALCVAPFAAAVEIITHPRIAPRDPCIAE FT ELCMRDELEVADPTDEEPEACLENISGTSSDKKVSKIKRRHRGKFALHAAIAAKLHFGG FT TPTPTRSNELAVRRWLASYCKERRLVDTHAIQAIALATPLVLTPGAAEITERAILNSAV FT FGMRRAALAEASKPTSLTYQMVFEPHRPRTWLRAWRKVVGLPDFQGYSPVKXGCLREIA FT GVDTKIVRGEHQSMAVFPREGISKPRRIFQVCGMGNGTTFGVHNNSLTNLRRGLVERVF FT YVEDACKNLVPTPQPLPGKFQELKYLARRVARIAGHHTPIPREHYPGLYKGRRYQIYAD FT AVNSLASNPVHRRDSFLKTFVKAEKINFSAKPDPAPRVIQPRDPRYNVEVGRYLKPYEH FT HLYRALDVVWKGPTVLKGYTVSEIGSIMHSHWSQFQKPCAVGFDMKRFDQHVSVDALRF FT EHSVYGRSFCSKELDRLLEWQLLNSGVGHANDGYIRYKVDGCRMSGDVNTAMGNCLLAC FT LITKHLLKGIRCRLINNGDDCVLFFNTPDLAAVTERLAHWLDFGFQCVVEEPVYELEEV FT EFCQMKPVFDGEEWVCVRNVHVSVAKDTYSINPWNNECDAGRWIRAIGECGEALTGGIP FT VLNAYYKVFKRAYKAPGRVKESLAFDSGMYRLSQRCSRSFHEPTEEARVSFFKAFGVDP FT MAQMAIEEFYDSMDIELEFAPEGKLDDISLLWLLRNRMIAS" FT CDS 41..670 FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q9IR82" FT /protein_id="CAB81768.1" FT /translation="MLSQLLSKLLLSVRHYVSHLSPQLLKLSRTPVSLHEILASLKSSV FT CAMSLRLLIPLMRNLKLVWKIFPVLQAIRKCLKSKGDTGVSLLSMRQSQQSYILGALQP FT QRARMSLLCGGGLQVIARKGGWLIHTLYKRSLWPLLWYLRQGPLKSLSERSSIALFSVC FT GGRLSLRPLNRLVSHTKWYLSLIGRGLGSEPGGKWWVSLIFRGTRP" FT CDS 2205..2417 FT /product="putative movement protein P8" FT /db_xref="GOA:Q9IR81" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:Q9IR81" FT /protein_id="CAB81769.1" FT /translation="MASPQSNDSFIELNPHNTGDSKGAGKGNRQAKKEVALQAVHKANK FT HDEAVSGGSFVFVADKVEVTININF" FT CDS 2344..2580 FT /product="putative movement protein P9" FT /db_xref="UniProtKB/TrEMBL:Q9IR80" FT /protein_id="CAB81770.1" FT /translation="MKLFLGVLSFLLLIKLRLPLTLTFDVDLRTLRENCFIITTLSLFG FT FFITVLIKAESEHFHFHTHDSSKTQNIVVNTGK" FT CDS 2590..3627 FT /product="coat protein" FT /db_xref="GOA:Q9IR78" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9IR78" FT /protein_id="CAA60169.2" FT /translation="MLQKNDPAVQRAFNAHLPWAIKLKNDGWAALSKGQKRAANRYAGG FT TRPVTSQIKLSTLKVTAPVAASMRTRNPGANIRTAGKSVTVVHCEFVGNIARQTGSGLL FT VVERTINPSNVLSFPWLSVLAAGYEKYRVSSLSLRYSPTCATTTEGKVILAFDKDAADA FT SPTSKSDMYNHDGAVGVSPWDSAMLQIPCDNVDRFINDSSSSDPKLVDFGKVVVANYGQ FT SEGDVDVIGELFLQYSITLKIPQGMATPTQSGVGISSVGPSLFRVQLRDDTHVFTCNGT FT GRFLFFFNSTVDATSTIAGMEVKQKSSTDDKGETTIMELLATESGGTIAILAATGTLTW FT WACRN" FT CDS 2603..3277 FT /product="hypothetical protein" FT /db_xref="GOA:Q9IR79" FT /db_xref="UniProtKB/TrEMBL:Q9IR79" FT /protein_id="CAB81771.1" FT /translation="MTQPFNVRLMPIYLGQSNLRTMGGLLFLRVKREQPIDTRVEPVLL FT LLKLSCQHLRLQLRWPPRCGLETLEQTLGRLENRSLSSIASLWAISPGRLVVGYWWSRG FT QSTPATYSASPGFLYLLPDMRSTACHHYLFDILQLAPQQRRARSSWHLIKMLQMLPLPP FT RATCITMMEQLESRPGIVPCCKYLAIMWIGLLMIPVVPTLSLLTLVRWLLPIMANLKGM FT WM" XX SQ Sequence 3911 BP; 975 A; 917 C; 1007 G; 1012 T; 0 other; gggaaaccgt ggcaagtttc cgaattctct atgctctcac atgctttctc aattgctttc 60 gaaactgctt ctctcggtgc ggcactatgt gtcgcacctt tcgccgcagc tgttgaaatt 120 atcacgcacc cccgtatcgc tccacgagat ccttgcatcg ctgaagagct ctgtatgcgc 180 gatgagcttg aggttgctga tcccactgat gaggaacctg aagcttgtct ggaaaatatt 240 tccggtactt caagcgataa gaaagtgtct aaaatcaaaa ggcgacacag gggtaagttt 300 gctctccatg cggcaatcgc agcaaagcta cattttgggg gcactccaac cccaacgcgc 360 tcgaatgagc ttgctgtgcg gcggtggctt gcaagttatt gcaaggaaag gaggttggtt 420 gatacacacg ctatacaagc gatcgctctg gccactcctc tggtacttac gccaggggcc 480 gctgaaatca ctgagcgagc gatcctcaat agcgctgttt tcggtatgcg gagggcggct 540 ctcgctgagg cctctaaacc gactagtctc acataccaaa tggtatttga gcctcatcgg 600 ccgaggactt ggctcagagc ctggcggaaa gtggtgggtc tccctgattt tcaggggtac 660 tcgcccgtga aataggggtg ccttagggaa atagctggtg tggacaccaa aattgtccgt 720 ggagagcacc agtctatggc cgtattccct agggaaggaa tctccaaacc ccggcgcatc 780 ttccaagtct gtggaatggg taatgggacc actttcggag ttcacaacaa ttccttaact 840 aatttaagga gaggtcttgt tgagagagtg ttctacgtgg aagatgcctg caaaaattta 900 gtcccgaccc ctcagcccct acctgggaag ttccaggagc tgaagtatct ggctcgacgt 960 gtcgcgcgca ttgctggtca tcatacccct atccccaggg aacactaccc tgggttgtat 1020 aagggcagga ggtaccaaat ttacgccgat gcggtcaaca gtttggcatc taatccggtt 1080 caccggagag attcctttct gaagactttc gtgaaagctg agaagattaa cttttcagcg 1140 aaaccagacc cggctcctag agttatccag cctagggatc cgagatataa tgtagaggta 1200 ggtagatatc ttaagcccta cgaacaccat ctatatagag ctctagatgt tgtttggaaa 1260 gggcctaccg tgcttaaggg atatactgtc agcgagattg gaagtattat gcactcgcat 1320 tggtcacaat tccagaaacc atgtgctgtg ggttttgaca tgaaacgatt tgatcagcac 1380 gtttctgtgg atgcgttgcg attcgagcat tctgtgtatg gaaggagttt ttgctctaag 1440 gagcttgaca gattgctcga gtggcaactc ctcaattccg gggttggaca cgccaatgac 1500 gggtacatta ggtacaaggt tgatggatgt aggatgagtg gggacgtgaa cactgctatg 1560 ggtaactgtc tactcgcttg tctcatcacc aaacacttat taaaaggcat cagatgtaga 1620 ctcatcaaca atggagacga ctgtgtcctc ttcttcaaca ctcctgatct agctgcggtc 1680 actgaaaggt tggctcactg gcttgatttt gggttccagt gtgttgtcga ggaaccagtc 1740 tatgaactgg aagaagttga gttttgccaa atgaagcccg tgtttgatgg tgaagagtgg 1800 gtgtgtgtgc gtaatgttca cgtgtcggta gcgaaggata cctactctat caacccttgg 1860 aataatgagt gtgacgctgg taggtggata cgggctattg gggaatgcgg tgaggcactc 1920 accgggggca tcccagtgct gaatgcatat tacaaggtgt tcaaaagagc gtacaaagca 1980 ccaggtaggg tgaaggagag ccttgcgttc gattccggta tgtaccggct ctcccaacga 2040 tgttctagaa gctttcatga accaacagaa gaagccaggg tgagtttctt caaagccttt 2100 ggggtggacc ctatggctca aatggccatt gaggagtttt atgactccat ggacattgag 2160 cttgagtttg ccccggaggg aaaacttgat gatatctctc tcttatggct tctccgcaat 2220 cgaatgatag cttcatagaa cttaatcctc acaatactgg tgatagtaag ggcgcaggta 2280 aagggaacag acaggcaaag aaagaagttg cacttcaagc agtgcacaaa gctaataagc 2340 acgatgaagc tgtttctggg ggttctttcg tttttgttgc tgataaagtt gaggttacca 2400 ttaacattaa cttttgacgt ggacttgaga accctccggg aaaattgctt tatcataacc 2460 acgcttagct tgtttgggtt ctttatcact gtcctgatta aggctgaatc agaacacttt 2520 cacttccaca cacacgacag tagtaagaca caaaatatag tagttaacac tggaaagtaa 2580 ccaaccacaa tgctgcagaa gaatgaccca gccgttcaac gtgcgtttaa tgcccattta 2640 ccttgggcaa tcaaacttaa gaacgatggg tgggctgctc tttctaaggg tcaaaagaga 2700 gcagccaata gatacgcggg tggaacccgt cctgttactt ctcaaattaa gctgtcaaca 2760 cttaaggtta cagctccggt ggccgcctcg atgcggactc gaaaccctgg agcaaacatt 2820 aggacggctg gaaaatcggt cactgtcgtc cattgcgagt ttgtgggcaa tatcgcccgg 2880 cagactggta gtgggctact ggtggtcgag aggacaatca accccagcaa cgtactcagc 2940 ttcccctggc tttctgtact tgctgccgga tatgagaagt accgcgtgtc atcactatct 3000 cttcgatatt ctccaacttg cgccacaaca acggagggca aggtcatctt ggcatttgat 3060 aaagatgctg cagatgcttc ccctacctcc aagagcgaca tgtataacca tgatggagca 3120 gttggagtct cgccctggga tagtgccatg ctgcaaatac cttgcgataa tgtggatagg 3180 tttattaatg attccagtag ttccgaccct aagcttgttg actttggtaa ggtggttgtt 3240 gccaattatg gccaatctga aggggatgtg gatgtgattg gagagctgtt cctgcaatac 3300 tccatcaccc tcaaaatccc ccaaggtatg gcgacaccta cacagtccgg ggtaggcatc 3360 tcatcggttg gcccctccct cttccgggtc caacttagag atgacacaca tgtgtttacc 3420 tgcaacggga ctggtcgctt cttgttcttc ttcaactcaa ccgttgatgc aacctccacc 3480 atcgctggga tggaggtgaa gcagaagagt tcaaccgacg acaaaggaga aacaacgata 3540 atggaactac tcgctactga atcaggtggt acgatagcaa tattggcggc cacaggcaca 3600 ctcacttggt gggcctgtag gaactaggtg tgtattgtat gggcctccgt gctgttaggg 3660 gcagtggaaa cgtcggtcta gccagccgtc ccctgggtag tgtgctccgt ctaagtacac 3720 cactactcgg tttccacaaa cgatcggact cccaaaatag tgtacattat gttgattgct 3780 tctttcctcc cttgtaatat ctcctctccc ctctcctcta cgcttggaat ccataaaatc 3840 cttcgggtgg gcttggattt cgggtacttg tttgaaatac cctcacaacc gccatagttg 3900 tgaggcagcc c 3911 //