ID X85989; SV 1; linear; genomic RNA; STD; VRL; 3699 BP. XX AC X85989; XX DT 17-MAY-1996 (Rel. 47, Created) DT 28-AUG-1996 (Rel. 49, Last updated, Version 6) XX DE Olive latent virus 1 complete genome XX KW capsid protein; RNA dependent RNA polymerase gene. XX OS Olive latent virus 1 OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Alphanecrovirus. XX RN [1] RX DOI; 10.1007/BF01718158. RX PUBMED; 8678829. RA Grieco F., Savino V., Martellli G.P.; RT "Nucleotide sequence of the genome of a citrus isolate of olive latent RT virus 1"; RL Arch. Virol. 141(5):825-838(1996). XX RN [2] RP 1-3699 RA Grieco F.; RT ; RL Submitted (30-MAR-1995) to the INSDC. RL F. Grieco, CNR, Centro Studio Virus e Virosi, Univ. of Bari, Via Amendola RL 165/A, I- 70126 Bari, ITALY XX DR MD5; faf25c7e710a589939e7131702cdf29b. DR EuropePMC; PMC112128; 10864632. XX FH Key Location/Qualifiers FH FT source 1..3699 FT /organism="Olive latent virus 1" FT /strain="citrus" FT /mol_type="genomic RNA" FT /db_xref="taxon:47669" FT CDS 61..2232 FT /transl_except=(pos:664..666,aa:OTHER) FT /product="RNA dependent RNA polymerase" FT /note="ORF2" FT /db_xref="GOA:Q83938" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q83938" FT /protein_id="CAA59977.1" FT /translation="MELPNQHKQTAAEGFVSFLNWLCNPWRRQRTVNAAVAFQNSILAI FT EDVEHFEDINECFEESSGGQSQRTKVVAEGAYSPVKSERTRRVRKQKAKFVKYLVNEAR FT AEFGLPKATEANRLMVQHFLLRRCKDWGVVTSQCHNNVALALTLVFVPTGDDLLARVVM FT NTYKTRSAVRGMDNLQGEGWWNNRLGIGGQAGLAFRAKXGCLERRPGFSTSVSRGNHPD FT LVVKPSGHPEKQRQLLRYSGIGGHLLIGIHNNSLSNLRRGLMERVFYVEGPNGLQDPPK FT PVRGAFNSLNKFRDLYTKNSWRHSPVTNEQFLMNYSGRKLTIYKEAVDSLSHQPLSLRD FT SRLKTLLKAEKLNLSKKPHPAPRVIQPRSPRYNVCLGRYLRHYEHHAFKTIAKCFGEIT FT VFKGFTLEQQGEIMFSKWKKYVKPVAVGLDASRFDQHVSWEALQYEHEFYIRDYPNDKQ FT LKWLLKQQLSNIGTAFASDGIIKYKKEGCRMSGDMNTSLGNCILMCAMVYGLKEHLGIN FT LSLANNGDDCVIVCEKADLKKLTSSIEPYFRQFGFKMEVEKPVDIFERIEFCQTQPVFD FT GSQYIMVRKPSVVTSKDVTSLIPCQNEAQYAEWLQAVGECGMSINGGIPVMQNFYQMLQ FT TGVKRTKFTKTGEFQTNGLGYHSRYMHRVAQTISPETRLSLYLAFGITPDLQEALEVFY FT DTHTLELDDVVPVDTYQVSGEHLINGLPN" FT CDS 61..666 FT /note="ORF1, unknown function" FT /db_xref="GOA:Q83939" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q83939" FT /protein_id="CAA59978.1" FT /translation="MELPNQHKQTAAEGFVSFLNWLCNPWRRQRTVNAAVAFQNSILAI FT EDVEHFEDINECFEESSGGQSQRTKVVAEGAYSPVKSERTRRVRKQKAKFVKYLVNEAR FT AEFGLPKATEANRLMVQHFLLRRCKDWGVVTSQCHNNVALALTLVFVPTGDDLLARVVM FT NTYKTRSAVRGMDNLQGEGWWNNRLGIGGQAGLAFRAK" FT CDS 2216..2440 FT /note="ORF3, unknown function" FT /db_xref="UniProtKB/TrEMBL:Q83940" FT /protein_id="CAA59979.1" FT /translation="MDYQTEVSEDNVSVRGRARRGTEDKKHNGSGLTGVKRHAVSETSQ FT KSQSRYWSNGTMTNIAEEQTITVTYNFNF" FT CDS 2443..2613 FT /note="ORF4, unknown function" FT /db_xref="GOA:Q83941" FT /db_xref="UniProtKB/TrEMBL:Q83941" FT /protein_id="CAA59980.1" FT /translation="MAVCRCCDTSPGITLFPYFAILILILAILVVGTPNQQYHHSPSTY FT EYKTQHISIAK" FT CDS 2635..3447 FT /product="capsid protein" FT /note="ORF5" FT /db_xref="GOA:Q83942" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q83942" FT /protein_id="CAA59981.1" FT /translation="MVNFYWDSRIQRWFYESGPQRVRTYIKRISPHQMASLPARKTKRS FT PPNRGNLQVLPVIAPVAGGVISTEGHVPRITTTNEQTVVRNTEIISAINSAALGAIFGN FT YVTVIPSNLSWLAGLSDLYSKYRWRKLRFIYLPVCPTSTQGNVSMSLSFDRIDTQPTSI FT TQMQQGYRAITFPPYAGYDGAMALASFGNIPGMVVVDVDCARMDKLWYPNVTLATFLAM FT APTSRTDTCGVTLFTASDQGPAAATNFGQVFCQYEIEFIEPVNPTVNL" XX SQ Sequence 3699 BP; 1006 A; 873 C; 904 G; 916 T; 0 other; tagtatacat accaagtata cggatatcgg tgcgagccct gcacagctaa agtgtataaa 60 atggagttac ccaaccaaca taagcaaact gctgctgaag gtttcgtttc tttccttaac 120 tggctttgta acccctggag acgccaacgt acagtcaacg ctgctgtcgc cttccagaat 180 agcattcttg ctattgagga cgtagaacac ttcgaagata tcaacgagtg ttttgaggaa 240 tcgtctggag gccaatcgca gcgcactaag gttgtcgccg aaggggctta ctctcccgta 300 aaatccgaac gcacccgccg agtccgcaag caaaaggcca aattcgtcaa atatttggtc 360 aatgaggctc gtgccgagtt tggtctcccc aaagctacag aggccaatcg actcatggtg 420 caacacttcc tgctccgaag gtgtaaggat tggggggttg tcacatccca gtgccacaac 480 aatgttgcac tcgccttgac tctcgtgttt gtcccaacag gggatgattt gctggcgcga 540 gtagtgatga acacgtacaa gacgaggtct gcggtccgtg ggatggacaa cctccaaggg 600 gaggggtggt ggaacaacag gcttggcata ggtggccagg ccggcttggc ctttcgggcc 660 aaataggggt gcctagagag gaggccgggg ttttccacgt ccgtttcgcg tgggaatcac 720 cccgatctgg tggtcaaacc atcaggacac cccgagaaac agcgtcagtt gttacgctat 780 agtggaattg gcggccattt attaatcggc atccacaaca actctctctc caatttgcgt 840 aggggcttaa tggagagagt tttctacgtc gagggaccca atgggctcca agacccccct 900 aaacccgttc ggggagcttt caactccctg aataagtttc gagacctata taccaaaaat 960 agttggcgtc attcccctgt aaccaatgaa caattcttga tgaattactc gggcaggaaa 1020 ctaactattt acaaagaagc ggttgatagt ttgtcgcatc aaccacttag cttacgggac 1080 tcgaggctga agactttact taaggccgaa aaactcaatc tgagcaaaaa gccacatcca 1140 gcaccccggg ttatccaacc caggtcaccc cggtacaacg tttgtttggg tcgttatcta 1200 cgtcactatg aacaccacgc gttcaaaacc attgctaaat gctttgggga gatcacggtc 1260 tttaaagggt ttactctaga gcaacaaggc gaaatcatgt tctcgaagtg gaagaaatat 1320 gttaagcccg tcgccgtcgg actcgatgca agtcggttcg accaacacgt gtcatgggaa 1380 gcacttcaat acgagcatga attttacatt agagattacc cgaatgataa acagctaaaa 1440 tggttgttga agcaacaact gagcaatatt ggcacagcgt ttgctagtga tggcatcata 1500 aagtataaga aggagggttg tcgtatgagt ggagatatga acaccagttt gggcaattgc 1560 attctcatgt gtgcgatggt atacgggttg aaggaacacc tgggcataaa tttatccctt 1620 gccaataatg gggatgactg cgtcattgtc tgtgagaaag cggatttgaa gaaattgaca 1680 agcagcatcg aaccatattt caggcaattt ggattcaaaa tggaggtgga aaaacccgtg 1740 gacatatttg aacgcattga gttttgccaa acccaacctg tgtttgatgg gtcccaatac 1800 atcatggttc gaaaaccctc ggtagtcaca tcgaaggatg tcactagctt aatcccatgc 1860 caaaatgagg ctcaatatgc agaatggctg caagctgtag gtgagtgtgg aatgagtatt 1920 aatggtggaa ttcctgttat gcagaatttt taccaaatgc tccaaactgg agttaaacgc 1980 accaaattca ccaagaccgg cgagtttcag acgaacgggt tggggtatca ctctagatat 2040 atgcatagag tggcccagac catttcgccc gaaacccgtt tatccttgta tttagcgttc 2100 ggtatcacac cagaccttca ggaagcactg gaggtcttct atgataccca cacgcttgag 2160 ttggatgatg ttgtcccagt tgatacctac caagtatcag gagagcattt gatcaatgga 2220 ttaccaaact gaggttagtg aggataacgt gagcgtacgc ggtcgggcta ggagggggac 2280 tgaggataag aagcacaacg gatcgggctt aactggcgtt aagcgtcatg cggtgagtga 2340 aacatctcag aaatcacagt caaggtactg gtcaaacggc acaatgacca acatagctga 2400 agagcagacc attaccgtga catacaactt taacttttag ttatggctgt gtgtcgctgt 2460 tgtgatactt caccaggtat tacattattc ccttacttcg ctattcttat tctcatcctt 2520 gcaatattag ttgttggtac tccaaatcag caatatcatc attctcctag tacttacgag 2580 tataagactc aacacatttc gatcgcaaaa tagacatttc gcaactctct caacatggtt 2640 aatttttact gggatagtcg aattcagagg tggttctacg aaagtggacc acagcgtgtc 2700 cgcacttata taaagcggat ttcaccccac caaatggcaa gtctgcctgc tcgcaagact 2760 aaaaggtcac ccccaaatag gggcaaccta caagttcttc cggttatagc acccgttgct 2820 ggtggagtga tttctacaga agggcacgtt cctcgaatta ctactactaa tgagcagact 2880 gtcgtgagaa acacagaaat cataagtgcc atcaactctg ccgctctagg tgccattttc 2940 ggcaactacg tcacggtaat cccgtccaat ctatcatggt tggcaggttt gtccgatttg 3000 tacagcaagt accgatggcg caaactccgg ttcatttatc taccggtttg cccaaccagc 3060 acacaaggca atgtttctat gtcactatca ttcgacagaa tcgatacgca gccaacaagc 3120 atcactcaaa tgcaacaggg ttaccgtgcc attacttttc cgccttacgc ggggtatgat 3180 ggtgctatgg ccttagcgtc attcggcaac attcctggaa tggttgtcgt ggacgtggac 3240 tgcgctcgaa tggacaagtt gtggtaccct aatgttaccc tggccacctt tctggccatg 3300 gcaccaacat ccagaacgga tacctgcgga gttaccctgt ttactgcaag tgatcaaggg 3360 ccagccgctg ccaccaactt tggccaggtg ttctgccagt atgaaatcga atttatagaa 3420 ccagtgaacc caactgtcaa tttgtaacca cacaacgatg ggtgagttac gtaactgtgc 3480 taatccctaa aagttttagt agagcggtaa gcaatccgga tcctggtaga caggtttaac 3540 gggctggggg tggtgccccg gccgtcgcat cacttgctga tacaatctac aagactcatg 3600 ggagggtctg cacaggtatc cacgccgagg acgggacgaa agtctcggac ggggggtagt 3660 ggacccaaca ccagattgag gggcttttgc cccacccca 3699 //