ID X85215; SV 3; linear; genomic RNA; STD; VRL; 4763 BP. XX AC X85215; XX DT 28-MAR-1995 (Rel. 43, Created) DT 21-MAY-2010 (Rel. 104, Last updated, Version 10) XX DE Carnation Italian ringspot virus genomic sequence for ORF1-5 XX KW capsid protein; movement protein. XX OS Carnation Italian ringspot virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Tombusvirus. XX RN [1] RX DOI; 10.1007/BF01322690. RX PUBMED; 7503699. RA Rubino L., Burgyan J., Russo M.; RT "Molecular cloning and complete nucleotide sequence of carnation Italian RT ringspot tombusvirus genomic and defective interfering RNAs"; RL Arch. Virol. 140(11):2027-2039(1995). XX RN [2] RC revised by [3] RA Russo M.; RT ; RL Submitted (10-MAR-1995) to the INSDC. RL M. Russo, Centro Virus Virosi CNR Bari Italy, Via Amendola 165/A, I-70126 RL Bari, ITALY XX RN [3] RC revised by [4] RA Russo M.; RT ; RL Submitted (08-MAY-2008) to the INSDC. RL M. Russo, Centro Virus Virosi CNR Bari Italy, Via Amendola 165/A, I-70126 RL Bari, ITALY XX RN [4] RP 1-4763 RA Russo M.; RT ; RL Submitted (19-MAY-2010) to the INSDC. RL M. Russo, Istituto di Virologia Vegetale del CNR, Unita Organizzativa di RL Bari,Via Amendola 165/A, I-70126 Bari, ITALY XX DR MD5; 2ff064c471479c018370a1694f37aae6. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC136569; 12239325. DR EuropePMC; PMC136688; 12438600. DR EuropePMC; PMC1370487; 13130137. DR EuropePMC; PMC2698906; 19473520. DR EuropePMC; PMC2706985; 19056337. DR EuropePMC; PMC516415; 15367615. DR RFAM; RF00171; Tombus_5. DR RFAM; RF00176; Tombus_3_IV. DR RFAM; RF00215; Tombus_3_III. DR RFAM; RF00510; Tombus_IRE. XX CC Sequence overlapping with that submitted by M.Russo (Adv.Virus CC Res. vol.144: 381-428, 1994) XX FH Key Location/Qualifiers FH FT source 1..4763 FT /organism="Carnation Italian ringspot virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:39443" FT CDS 78..1070 FT /gene="orf1" FT /function="unknown" FT /db_xref="GOA:Q66100" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q66100" FT /protein_id="CAA59477.2" FT /translation="MEGLKAESTTTVGINCNFQQTVMTETGNKLMFGSLPSSLERPVAK FT RNYYRTLSDWILTYTKTGKIEDTHDNAWSYVEDLVKTDFNAKYDWLAKRGVARDYRTAV FT GLAIIPGIPAIVANTRIVTGTCEVAGVAVKLPKALNMLSRFTHASVKVPYFYPRVDMSA FT RGMLIGLAAAAALVPICAGIAYATLPREKLSVFRLKSEVRVHMEDEKEATDLLLVEPAR FT ELKGKDGEDLLTGSRLTKVNARAGRPRRRPYAAKIAQVARAKVGYLKNSPENRLIYQRV FT LIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVEESAALWGSQESLGVK" FT CDS 78..2636 FT /transl_except=(pos:1068..1070,aa:OTHER) FT /gene="orf2" FT /product="replicase" FT /note="readthrough of stop codon" FT /db_xref="GOA:Q66101" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q66101" FT /protein_id="CAA59478.2" FT /translation="MEGLKAESTTTVGINCNFQQTVMTETGNKLMFGSLPSSLERPVAK FT RNYYRTLSDWILTYTKTGKIEDTHDNAWSYVEDLVKTDFNAKYDWLAKRGVARDYRTAV FT GLAIIPGIPAIVANTRIVTGTCEVAGVAVKLPKALNMLSRFTHASVKVPYFYPRVDMSA FT RGMLIGLAAAAALVPICAGIAYATLPREKLSVFRLKSEVRVHMEDEKEATDLLLVEPAR FT ELKGKDGEDLLTGSRLTKVNARAGRPRRRPYAAKIAQVARAKVGYLKNSPENRLIYQRV FT LIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVEESAALWGSQESLGVKXGGLVRLPGV FT VTQINRDIPSDVLLPQEVLEVRTGPPNAKDRNIFMVAGCPSQARFLVHNHCLKNLKRGL FT VERVFCVERNGKLTRTPQPTKGAFGRLSPFRKAVCEKVGVAHRLGYDGFLSYYNGAKLR FT TYTRAVESLHITPVSERDSHLTTFVKAEKISTSKGDPAPRVIQPRNPRYNVELGRYLRH FT MESKLMKAVDGVFGETTCIKGYTADEVGAIFREKWDRFHKPVAIGLDASRFDQHCSVEA FT LQYEHSFYRAMYPGNKLLGKLLDWQLHNKGKGYVPDGTITYRKEGCRMSGDINTSLGNY FT LLMCAMVHGYMRHLGINEFSLANCGDDCVLILERRNLKQVQKTLPEYFLNLGYTMKVEP FT PVFQLEEVEFCQAHPVQFQGGWKMVRNVRTAMSKDVHCVNNIRDLATRRAWSNAQHHGG FT LALSAGIPVVERFYSRFALYDVPRKHQRIDTVTNVHKWRGSGGSYVVTPESRASFWAAF FT GLTGDEQLALEDRLDRWEMDLFGEEGVDAHEPSILDSAVA" FT CDS 2648..3808 FT /gene="orf3" FT /product="capsid protein" FT /db_xref="GOA:Q66102" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q66102" FT /protein_id="CAA59479.2" FT /translation="MTMVLRNSGTMVPQGGNKMSKMAKNASQQGLQAGAAYLMSNPKGA FT LKKGKDAWNYMTAGGVPSGIVHSGGMKGAIMAPVAVTRQLRGSKPKFSGRTSGSVTVSH FT RELITQVNNSTQFVVNGGVTGNLRQVNPLNGTLFSWLPSIAANFDQYTFNSVTLHYVPL FT CATTETGRVAMYFDKDSEDLEPADRVELANYATLKETAPWAEAMLRIPTDRIKRYNDDS FT SVNDRKLIDLGQIGIATYGGSGTNPVGDVFISYSVTLHFPQPTAAGVQTRRLDLTSVLD FT TNVGPSYTITSSTATVYTVAFRTVGTFMLFGAVRSTGSPVIGLSSANIAINSNTTLNTA FT GTAFSYMTNVTVSALPASITFTVVGVITSSTSHAVRASRTNNADMI" FT CDS 3843..4412 FT /gene="orf4" FT /product="movement protein" FT /db_xref="GOA:Q66103" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/TrEMBL:Q66103" FT /protein_id="CAA59480.1" FT /translation="MDTEYEQVNKPWNELYKETTLGNKLTVNVGMEDQEVSLLPSNFLT FT KVRVGLSGGYITMRRIRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTESLDLGREI FT RLTMQHLDFSVPTRSDVPIVFGFEELVSPFLEGRELFSISVRWQFGLSKNCYSLPQSKW FT KVMYQEDALKVLKPSRKKASKTDSSV" FT CDS 3875..4393 FT /gene="orf5" FT /function="unknown" FT /db_xref="GOA:Q66104" FT /db_xref="InterPro:IPR004905" FT /db_xref="InterPro:IPR036131" FT /db_xref="PDB:1RPU" FT /db_xref="PDB:6BJG" FT /db_xref="PDB:6BJH" FT /db_xref="PDB:6BJV" FT /db_xref="UniProtKB/Swiss-Prot:Q66104" FT /protein_id="CAA59481.1" FT /translation="MERAIQGNDTREQANGERWDGGSGGITSPFKLPDESPSWTEWRLY FT NDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFLG FT ANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEVESNVSRGCPEG FT IETFKKESE" XX SQ Sequence 4763 BP; 1256 A; 992 C; 1303 G; 1212 T; 0 other; agaaatatct caggatttga ccgtccggtg agttgcgctt atcacttgcg taaggtattt 60 ctctcttcat tgttcatatg gagggtttga aggctgagtc taccacaact gtggggataa 120 attgtaactt tcagcaaaca gtgatgactg agaccggtaa taagttgatg ttcggaagtt 180 taccttcaag tttggaacga cccgttgcaa agaggaacta ttatcgtaca ttatcggact 240 ggattttaac gtacactaag acagggaaaa tcgaggatac acatgataat gcttggagtt 300 atgtcgagga tcttgtcaag actgacttca atgctaaata tgattggttg gctaaacggg 360 gtgtggctcg tgattaccgc actgccgtgg ggttggccat catacctggt atcccggcga 420 ttgtggcaaa cacacgcatt gttactggta catgtgaggt ggcaggggtt gctgtaaagc 480 tgcccaaggc gctgaacatg ctttctagat tcacacatgc gagtgtcaaa gtaccgtact 540 tttatccacg tgtggacatg agtgcgcgtg gcatgctcat tggcctggcg gcggctgcag 600 cacttgttcc tatttgtgct ggcattgcgt acgctaccct ccccagggaa aaactgtctg 660 tgtttaggtt gaaatcagag gttcgtgttc atatggagga tgagaaagaa gcaacggact 720 tgttgttggt tgagcctgct cgggagctca agggtaagga tggtgaggat ctcctcactg 780 gtagtagatt aactaaggtg aacgcgcgcg cggggcgccc tcgtagaagg ccttatgcag 840 ctaaaattgc acaggtcgcg agagccaagg tgggttacct taagaatagt cctgaaaata 900 gactaatcta ccagcgagtg ctgattgaaa tcatggacaa ggactgcgtc aggtatgttg 960 acagggatgt catattgcct ttggctattg gatgctgttt tgtctatcct gatggagtgg 1020 aggagtcggc ggcactttgg ggttcccagg aatccctcgg tgtcaaatag ggaggcctag 1080 tgcgtctacc tggggtcgta acacagatca atcgagatat cccatctgat gtgttgctcc 1140 cccaggaagt gctagaggtt cgtacaggac ctcccaatgc taaggaccgt aatatattta 1200 tggttgcagg ttgcccatca caggcacggt tcttagtaca taatcactgc ctgaaaaacc 1260 tcaaaagggg tcttgtggag agagttttct gcgtagagag aaacgggaag ctcactcgca 1320 ctccacaacc taccaaagga gcttttggac gtctttcccc gttcaggaaa gcagtttgtg 1380 agaaggttgg ggtcgcccac cgacttgggt atgatggatt tctgtcatac tacaacggtg 1440 cgaaactccg tacttacaca cgggctgtgg agagtctgca tatcactcct gtctcggaga 1500 gggatagtca tctgactacc ttcgtcaagg cagagaagat atcgacgtct aaaggtgacc 1560 cagcacctag ggtgattcag cctcgaaacc ctaggtacaa tgtcgaactt ggaagatatc 1620 tacggcatat ggaatccaag ctgatgaaag ctgttgatgg cgtattcgga gagacgacgt 1680 gcattaaggg atacacagcc gatgaggtgg gtgcaatttt tcgggagaag tgggataggt 1740 ttcataagcc tgtcgccatt ggtctcgatg catccaggtt tgatcaacac tgttccgttg 1800 aggctttgca gtatgagcat agcttctaca gggccatgta ccctggcaac aagctcttgg 1860 gcaagttgtt ggactggcaa ctccacaata aagggaaagg ttatgttcct gatggaacta 1920 taacctaccg caaggagggg tgccgtatga gtggggatat aaacacttcg ttgggaaatt 1980 atctattgat gtgcgctatg gtacacgggt acatgcgtca tttggggatt aatgagttta 2040 gtctggcaaa ctgtggggat gactgtgttc ttatactaga acgcagaaat cttaagcagg 2100 tgcagaagac cctaccggag tatttcctta atttgggata cactatgaag gtggagccgc 2160 ctgtatttca attggaagag gttgaatttt gccaggcaca ccccgtacag tttcaaggtg 2220 gttggaagat ggtccgaaat gtccgcactg cgatgagcaa ggatgtgcat tgtgtcaata 2280 atatacgcga tctggcgacg aggagagcat ggagtaatgc tcaacaccac ggtggattag 2340 cactcagtgc tggtatacct gtggttgaga ggttctactc caggttcgca ctatatgatg 2400 tgcctcgtaa gcatcaacgc attgacactg tcactaatgt tcacaagtgg cgtggatctg 2460 gtggaagtta tgttgtgact cctgaatcta gggctagctt ttgggctgcc ttcgggttga 2520 cgggggatga gcaactagct ttggaggacc gtctggatag atgggagatg gatctgtttg 2580 gagaggaggg tgttgacgct catgagccca gcatcctcga ctccgccgta gcttgaccaa 2640 gcgagacatg acaatggtac taagaaattc aggcacaatg gtgcctcaag gcggcaataa 2700 aatgagtaag atggcgaaga atgcatccca acaaggacta caagcagggg ctgcttatct 2760 gatgagcaac cctaaggggg cattaaagaa agggaaagac gcatggaatt acatgacagc 2820 agggggtgtg ccaagtggta tagtacactc agggggaatg aaaggcgcga ttatggcgcc 2880 cgtggcagtt accagacagt taagggggag taaacctaaa ttctccggaa ggacatctgg 2940 ttccgtgaca gtgagtcata gagagctaat tacgcaagtg aacaactcaa cgcagtttgt 3000 ggttaatggt ggtgttactg gcaaccttag gcaagttaat cccttaaatg ggaccttgtt 3060 ctcatggcta cctagcattg ctgctaactt tgatcagtac acattcaata gtgttacgtt 3120 gcattacgta cctttatgtg ctacgaccga aactgggcga gttgcgatgt atttcgacaa 3180 agattccgag gacctcgagc ctgcggacag agtagagctt gctaattatg ctacattgaa 3240 agaaactgca ccatgggccg aggccatgtt acgtatacca accgatcgta tcaaacggta 3300 taacgatgac agcagcgtaa atgatcgcaa attgattgac ctgggacaga taggtattgc 3360 aacatatggt ggttcgggca caaaccctgt tggggatgtg ttcatatctt acagtgttac 3420 tttgcacttc ccacaaccca ctgcagccgg tgtgcagaca cggcgtctcg atctcacaag 3480 tgttttagac acaaatgtcg gacctagtta cactatcacg tccagtactg ctacggtgta 3540 cacagttgct ttccgcactg tgggcacctt tatgctgttt ggagccgtga ggtcaactgg 3600 gtcacccgtt atcggactgt ctagtgcgaa cattgctatt aatagcaaca ccacattgaa 3660 cacagccggt actgctttct cctacatgac gaacgttacg gtgtctgctt tgccagcatc 3720 cattacgttt actgtagttg gggtaattac ctcgtcaact tcacatgccg tgagagcatc 3780 acgcactaat aacgcagaca tgatatagta ccattgaggg gcctcttgaa caagaccagt 3840 tcatggatac tgaatacgaa caagtcaata aaccatggaa cgagctatac aaggaaacga 3900 cactagggaa caagctaacg gtgaacgttg ggatggagga tcaggaggta tcacttctcc 3960 cttcaaactt cctgacgaaa gtccgagttg gactgagtgg cggctatata acgatgagac 4020 gaattcgaat caagataatc cccttggttt caaggaaagc tggggtttcg ggaaagttgt 4080 atttaagaga tatctcagat acgacaggac ggaagcttca ctgcacagag tccttggatc 4140 ttggacggga gattcggtta actatgcagc atctcgattt ctcggtgcca accaggtcgg 4200 atgtacctat agtattcggt ttcgaggagt tagtgtcacc atttctggag ggtcgagaac 4260 tcttcagcat ctctgtgaga tggcaattcg gtctaagcaa gaactgttac agcttacccc 4320 agtcgaagtg gaaagtaatg tatcaagagg atgccctgaa ggtattgaaa ccttcaagaa 4380 agaaagcgag taagacagac tcttcagtct gagttcgctg aaacgagtgt aaatctggca 4440 tagcatacag gttactcttg ttgggttcta gatgttatga tgacgagtcg gttcgggctc 4500 cgcactaggt ttggtcacct aggggatgga gatatggaaa gggtctcgtg tgctgttaga 4560 cggtcgtaag acgcgcttgc aacatgggcc tatgaccgga taagtcatag caatactagc 4620 caacatgaat aggattcctg tttacgaaag ttagatgtca cttgtggaaa cggacccaga 4680 cacggttgat ctcaccttcg ggggggctat agagatcgct ggaagcacta ccggacaacc 4740 ggaacattgc agaaatgcag ccc 4763 //