ID X83964; SV 1; linear; genomic RNA; STD; VRL; 4114 BP. XX AC X83964; XX DT 24-OCT-1995 (Rel. 45, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Oat chlorotic stunt virus RNA for RNA-dependent RNA polymerase (putative) DE and coat protein XX KW coat protein; RNA-dependent RNA polymerase. XX OS Oat chlorotic stunt virus OC Viruses; Riboviria; Tombusviridae; Avenavirus. XX RN [1] RX PUBMED; 7636483. RA Boonham N., Henry C.M., Wood K.R.; RT "The nucleotide sequence and proposed genome organisation of oat chlorotic RT stunt, a new soil-borne virus of cereals."; RL J. Gen. Virol. 76:2025-2034(1995). XX RN [2] RP 1-4114 RA Boonham N.; RT ; RL Submitted (17-JAN-1995) to the INSDC. RL N. Boonham, The University of Birmingham, The School of Biological RL Sciences, Edgbaston, Birmingham, B15 2TT, UK XX DR MD5; ff2a96a7a02896232ca21cade9ba9e66. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC1421387; 16524473. XX FH Key Location/Qualifiers FH FT source 1..4114 FT /organism="Oat chlorotic stunt virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:146762" FT CDS 48..686 FT /gene="orf p23" FT /db_xref="GOA:Q83927" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:Q83927" FT /protein_id="CAA58796.1" FT /translation="MSWPSLSGVPNGSSSVSTWLSVTHPRRSLPKELLTAFDTCNVAPE FT ALLVLRSTSLMILEETCVVVGAAEMPTAEDNSGRELFIGSNGDPMERKTRTAHHAIKKT FT VRIKKGHRTTFAMTVANGAYVKFGARPLTEANVLVVRKWIVKLIADEYKDLRVCDQALV FT IDRATFLSFIPTMAWNNYKFIFHGKNAVTDRVAGENLFSRIAQWANPGK" FT CDS 48..2306 FT /transl_except=(pos:684..686,aa:OTHER) FT /product="putative RNA-dependent RNA polymerase (p84)" FT /note="amber" FT /db_xref="GOA:Q83927" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:Q83927" FT /protein_id="CAA58797.1" FT /translation="MSWPSLSGVPNGSSSVSTWLSVTHPRRSLPKELLTAFDTCNVAPE FT ALLVLRSTSLMILEETCVVVGAAEMPTAEDNSGRELFIGSNGDPMERKTRTAHHAIKKT FT VRIKKGHRTTFAMTVANGAYVKFGARPLTEANVLVVRKWIVKLIADEYKDLRVCDQALV FT IDRATFLSFIPTMAWNNYKFIFHGKNAVTDRVAGENLFSRIAQWANPGKXGCPVVVTGQ FT GCVISRAPDCAQLRVKRLLGVTKNRTCMRVSGVSPNIQIIPFNNDITTLERAIKERVFF FT VKNLDKGSPTKFVSPPRPAPGVFAQRLSNTLGLLVPFLPSTAPMSHQQFVDSTPSRKRK FT VYQQALEDISCHGLNLETDSKVKVFVKYEKTDHTSKADPVPRVISPRDPKYNLALGRYL FT RPMEERIFKALGKLFGHRTVMKGMDTDVTARVIQEKWNMFNKPVAIGLDASRFDQHVSL FT EALEFEHSVYLKCVRRMVDKRKLGNILRHQLLNKCYGNTPDGAVSYTIEGTRMSGDMNT FT SLGNCVLMCMMIHAYGLHKSVNIQLANNGDDCVVFLEQSDLATFSEGLFEWFLEMGFNM FT AIEEPSYELEHIEFCQCRPVFDGVKYTMCRNPRTAIAKDSVYLKHVDQFVTYSSWLNAV FT GTGGLALAGGLPIFDAFYTCYKRNSNSHWFSGRKGRLKTLSSVDDSLPWFMRELGLKGK FT RSSAEPLPASRASFYLAWGVTPCEQLELEKYYKSFKLDTSTLLEEHLWQPRGVFPDED" FT CDS 2483..3847 FT /product="coat protein (p48)" FT /db_xref="GOA:Q83928" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:Q83928" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAA58798.1" FT /translation="MTLNLRKVPAYLPGKVDGALTNLVHAAVDHVVPGLGKAEKAAAVY FT NIKQVVKKLGTYTEQGVKKIAKKTLGELGYLNYTPSSHLGMAITGRGTKQINMSRSTNA FT GGFALGGTTAAPVSISRNINRRSKPSIKMMGDAVVISHSEMLGAINSGTPSSNVTAFRC FT TGYRANPGMSTIFPWLSATAVNYEKYKFRRLSFTLVPLVSTNYSGRIGVGFDYDSSDLV FT PGNRQEFYALSNHCENMPWQESTVEIKCDNAYRFTGTHVAADNKLIDLGQVVVMSDSVS FT NGGTISAALPLFDLIVNYTVELIEPQQALFSSQLYSGSTTFTSGIPLGTGADTTTVVGP FT TVVNSTTVTNCVVTFKLPAGVFEVSYFIAWSTGTAAVVPTVPTTGAGSKLSNTSTGSNS FT YGVCFINSPVECDLLLTATVLLIIPTLPSSTCVFHAPARRCTTPMCHRLLTSLAG" FT CDS 2889..3113 FT /gene="orf p8" FT /db_xref="UniProtKB/Swiss-Prot:Q83929" FT /protein_id="CAA58799.1" FT /translation="MRWLSRTVKCWVPLILAPLHRMSPLSVALATELILGCQLSSLGCL FT QLPLITRSTNFVGSASLLSRWFLPIIAEE" XX SQ Sequence 4114 BP; 996 A; 1001 C; 1076 G; 1041 T; 0 other; ttaaatcgtc ccgatttagc aagccatggc tctttatccg tctcaagatg tcttggccct 60 cactcagtgg ggtgccaaat ggctcaagtt cggtttcaac atggttgtcg gtaacacacc 120 cgaggcgcag tttgcccaag gaactcctca cggcgtttga tacatgtaat gtggctcccg 180 aagcactttt ggtgttgcgg tccacatcgt tgatgatact tgaggaaacc tgtgtggttg 240 tgggtgcggc agagatgccc accgctgagg ataactctgg tcgggagttg ttcattggct 300 ccaacggtga cccgatggaa aggaaaaccc gcacggcgca ccatgccatc aagaagaccg 360 tgcgcatcaa gaaagggcat cgcacaacct tcgccatgac tgtggcgaac ggggcgtatg 420 tcaagtttgg tgcccgtcca ttgacggagg caaatgtgct ggtcgtgcgt aaatggatcg 480 ttaagcttat tgctgacgag tacaaggatt tgcgggtgtg cgaccaggca ctggttatag 540 accgtgccac gttcctatca ttcattccta ccatggcgtg gaataactat aagtttatct 600 tccacggtaa gaatgccgtc acagatcgcg tggcgggaga gaacctgttt tcccggatcg 660 cccaatgggc gaatccaggg aaataggggt gcccagtagt cgtcacaggg cagggatgcg 720 tcattagccg cgctcccgat tgtgcccagt tgcgtgtgaa gaggctattg ggagtcacaa 780 agaaccggac atgtatgcgt gtgtctgggg tttcccctaa catccaaatc atcccgttca 840 ataacgacat cacgactctg gagagggcca taaaagagag ggtgttcttt gtcaaaaacc 900 tcgacaaggg atcgcccacc aaatttgtct cccctcccag acctgcgcct ggtgtgtttg 960 cccagagatt gtcaaatacg ttgggactgt tagtaccttt tcttccctcg accgctccga 1020 tgtcacatca gcaatttgtt gatagcacgc cgagccgcaa gaggaaggtg taccaacagg 1080 ctctcgagga tatcagttgt catgggctga acctcgagac agacagcaag gtgaaggtgt 1140 ttgtgaaata cgagaaaacc gaccatacat ccaaggcaga tccagtgccg cgggtgattt 1200 ctccccgtga tcctaagtac aacctggcgc tcggcaggta tcttaggccc atggaagaac 1260 gaatattcaa ggcgcttggc aaattattcg gccatcgcac cgtcatgaaa ggtatggata 1320 ccgatgtgac ggctagggtg atccaggaga aatggaacat gttcaacaag cctgtagcta 1380 taggcttgga tgcgtctaga tttgaccagc atgtttcact ggaagcgctt gaatttgagc 1440 attcagtgta cctcaagtgt gtgcgcagga tggtggacaa gcgtaagctt ggcaacatcc 1500 tgcgacatca acttctaaac aaatgttacg gcaacacgcc tgatggcgcg gtgtcgtaca 1560 ccattgaggg tacacgaatg agtggggaca tgaacacatc cctaggtaat tgcgttttga 1620 tgtgtatgat gatccacgct tatggtttgc ataagagtgt caacatacaa ctggcgaaca 1680 atggggatga ttgtgtcgtg tttctggagc aatccgattt ggccaccttc tcagaaggct 1740 tgtttgaatg gttcctagaa atgggattca acatggccat cgaggagccc tcctacgaac 1800 tggagcatat cgagttttgt cagtgcaggc cggtgtttga tggtgttaaa tacaccatgt 1860 gccggaaccc ccgcactgcc attgctaaag atagcgtgta tctgaaacac gttgatcagt 1920 tcgtcacata ttctagctgg ctgaatgccg tggggacagg tgggttggcg ctggcgggtg 1980 gtttgcccat ctttgatgcg ttttacacct gttataagcg taacagcaac tcccactggt 2040 tcagtggccg gaaaggaagg ttgaaaaccc tgtcaagtgt tgatgattcg ctcccctggt 2100 tcatgcgcga gcttggactg aaagggaaaa ggtcgtcagc cgagccgtta ccagcgtctc 2160 gtgccagctt ttacctcgca tggggggtca ccccctgtga gcagttggag cttgagaaat 2220 attacaaatc gttcaaactg gacacgtcca cattgcttga ggagcatttg tggcagcctc 2280 gcggggtgtt tcccgatgag gattgagcac attgtggaag aaggtcacca cattaaatcc 2340 accctttacc atggggcttg tcgttaaatt gccaaaacca atttgatggg ctgatataga 2400 tgccaagaga ctgcacggca tactacgtcg acaagtgaac agtcccgttg tgttgcggga 2460 tcccatacta acaatcgttc ctatgactct gaacttacgt aaggtaccag catacctacc 2520 aggcaaagtt gacggagcgc tcactaattt ggtgcacgcc gccgttgacc acgtggttcc 2580 tggattaggc aaagcagaga aagctgcggc agtgtacaat atcaaacagg tcgttaagaa 2640 actcggtaca tacaccgagc aaggcgtcaa gaaaatcgca aagaaaacgt tgggtgagtt 2700 gggttatctc aattacaccc catcgtcaca tcttggcatg gctataaccg gtcgaggtac 2760 aaaacaaatc aatatgtctc gcagcacaaa tgctggcggt tttgccctcg gtggcaccac 2820 cgcagcgcca gtgtccatat cccgcaatat caaccgccgc tccaagccca gcattaagat 2880 gatgggtgat gcggtggtta tctcgcacag tgaaatgttg ggtgccatta attctggcac 2940 cccttcatcg aatgtcaccg ctttccgttg cactggctac cgagctaatc ctgggatgtc 3000 aactatcttc ccttggctgt ctgcaactgc cgttaattac gagaagtaca aatttcgtag 3060 gctcagcttc actcttgtcc cgttggtttc taccaattat agcggaagaa taggagttgg 3120 gtttgattac gattcgtctg acctcgtacc tggcaacaga caggaatttt atgctctctc 3180 aaaccattgt gagaatatgc cgtggcagga aagcactgtg gagattaaat gtgataatgc 3240 gtaccgattc actggcactc atgttgcagc ggacaataag ctgattgacc tcggccaagt 3300 cgtggtgatg tctgattctg tgtccaatgg tggcactatt tccgctgcgt tgccgctttt 3360 cgacctgata gtcaattata ctgtggagct gattgaacct caacaagcct tgttttcatc 3420 ccaactgtat agtggttcta ccacttttac ctctgggata ccacttggca caggtgctga 3480 taccacaact gtggtcggtc ccactgttgt aaactccaca actgtcacga actgtgtggt 3540 caccttcaag ctgcccgctg gggtgtttga ggtgtcatat ttcattgcct ggtccacagg 3600 aaccgctgct gttgtgccca ctgttcccac tactggggct gggtccaagt tgtcgaacac 3660 atccactggc tccaactctt atggggtctg tttcataaac agccccgttg agtgtgatct 3720 gttgcttacg gcaacggtac tgcttataat tccaacctta ccaagttcaa cgtgtgtgtt 3780 tcacgcacct gctcgcaggt gtacaacgcc tatgtgtcat aggttgctaa cgtctcttgc 3840 tggctgagac attaataaat ggatccagta ggtcgtcaaa gcaaaccaac aaggcttgcc 3900 ggggtggatg cgtagcgcag catgtctgtg ttggtacggc cacacccgga gggacctcac 3960 cttgtaggca ggagtacacg actgttttct ttattgttgc tcacaatgga aaatacaaaa 4020 ataggcttat caccatgatg gacacgccaa aatattccag ccctggcgag tcgcggtcgc 4080 aatccgcagt ttattaaaac ccttcggggt gggc 4114 //