ID X82130; SV 1; linear; genomic RNA; STD; VRL; 6618 BP. XX AC X82130; XX DT 13-OCT-1994 (Rel. 41, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 6) XX DE Odontoglossum ringspot virus RNA for replicase, movement protein and coat DE protein genes XX KW coat protein; movement protein; replicase protein. XX OS Odontoglossum ringspot virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RX DOI; 10.1007/BF01322531. RX PUBMED; 7487489. RA Ryu K.H., Park W.M.; RT "The complete nucleotide sequence and genome organization of odontoglossum RT ringspot tobamovirus RNA"; RL Arch. Virol. 140(9):1577-1587(1995). XX RN [2] RP 1-6618 RA Ryu K.H.; RT ; RL Submitted (07-OCT-1994) to the INSDC. RL K.H. Ryu, Dept. of Agricultural Biology, Korea University, Dept. of RL Agricultural Biology, College of Natural Resources, Seoul 136-701, KOREA XX DR MD5; eb8f7d166c2925fe16ed04306973e280. DR EuropePMC; PMC5282660; 28137291. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01083; UPD-PK2. XX FH Key Location/Qualifiers FH FT source 1..6618 FT /organism="Odontoglossum ringspot virus" FT /strain="18KDa coat protein" FT /isolate="18KDa coat protein" FT /mol_type="genomic RNA" FT /db_xref="taxon:12238" FT CDS 70..3408 FT /product="126KDa replicase" FT /db_xref="GOA:Q84124" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q84124" FT /protein_id="CAA57641.1" FT /translation="MAHFQQTMNTKVTEAGIGRNSLINDLAQRRVYDKPVEELNHRSRR FT PKVNFSKVISQEQIIQATNAYAEFEITFYNTQLAVHSMAGGLRALELEYRRMQIPFGSI FT TYDIAGNFSAHIYKGRDYVHSCMRNLDIRDVARHINQQDTVSSYVARLERSKRGLPVFQ FT QSAFNKYMSDPDAVCSDKRFQECSYSVDLPGKTYAVGLHSIYDIPADEFGAALLRKDVH FT ICYAAFHISENLLLETTSAPLDEIGATKYKSGDRLSFFIQNESTLNYEHSYKNVIKYVC FT KTFIPASNRFVYHKEFMCTRVNTWFCKFTKVDTYFLFRGVYTRGEDSEQFYTAMDEAWE FT YKKTLAMLNSERTIFRDRAAVNFRFPKVKDMVIVPLFDGSVTSGKMKRREVMVNKDFVY FT TVLNHIRTYQDKALTYKNVLSFVESIRSRVIMNGVTARSEWEVDKSVLQPLSMTFLLQT FT KLAEAKDQVVLKKFQKIDDTVTNLFWKQISDAVGDLFPSIKERLISGGFVKVAEQSLQI FT KTPDEYITFADKLVMEYKATEELQHLDISKPLERAEKYYNALSELSVLKESDEFDITQF FT KNLCEEKDIAPDVLAKVIVPIMKNELTLPFNNPTPEALSDALSPLPKDLDMRFSLLKLS FT TCAPFPSVKTLDSGLLPKQSYGDERQFESQSVVSVSDFHLKSVESVKIKSMSSAVYTGP FT LKVQQMKNYMDYLSASISATVSNLCKVLKDVYGVDPESAEKSGVYDVVKGKWIIKPKDK FT CHAWGVADLNNGEKVIVLLEWADGFPICGDWRRVAVSSDSLIYSDMGKLQTLLRCLKDG FT EPVLRMPKVTLVDGVLGCGKTKEILETVNFDEELILVPGKEACKMIIKRANKSGHVRAT FT KDNVRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFI FT NRVANFPYPKHFGHTCLHRREVRRLSLRCPADVTHFMNSKYDGKFLCTNDVIRSVDAEV FT VRGKGVFNPKSKPLKGKIITFTQSDKAELNERGYEEVSTFGEINTVHEIQGETFEDVSV FT VRLTPTALELISKSSPHVLVALTRHTKSFKYYCVVLDPLVKVCSDLSKVSDFILDMYKV FT DAGIL" FT CDS 70..4860 FT /transl_except=(pos:3406..3408,aa:OTHER) FT /product="181 KDa readthrough protein" FT /db_xref="GOA:Q84125" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q84125" FT /protein_id="CAA57642.1" FT /translation="MAHFQQTMNTKVTEAGIGRNSLINDLAQRRVYDKPVEELNHRSRR FT PKVNFSKVISQEQIIQATNAYAEFEITFYNTQLAVHSMAGGLRALELEYRRMQIPFGSI FT TYDIAGNFSAHIYKGRDYVHSCMRNLDIRDVARHINQQDTVSSYVARLERSKRGLPVFQ FT QSAFNKYMSDPDAVCSDKRFQECSYSVDLPGKTYAVGLHSIYDIPADEFGAALLRKDVH FT ICYAAFHISENLLLETTSAPLDEIGATKYKSGDRLSFFIQNESTLNYEHSYKNVIKYVC FT KTFIPASNRFVYHKEFMCTRVNTWFCKFTKVDTYFLFRGVYTRGEDSEQFYTAMDEAWE FT YKKTLAMLNSERTIFRDRAAVNFRFPKVKDMVIVPLFDGSVTSGKMKRREVMVNKDFVY FT TVLNHIRTYQDKALTYKNVLSFVESIRSRVIMNGVTARSEWEVDKSVLQPLSMTFLLQT FT KLAEAKDQVVLKKFQKIDDTVTNLFWKQISDAVGDLFPSIKERLISGGFVKVAEQSLQI FT KTPDEYITFADKLVMEYKATEELQHLDISKPLERAEKYYNALSELSVLKESDEFDITQF FT KNLCEEKDIAPDVLAKVIVPIMKNELTLPFNNPTPEALSDALSPLPKDLDMRFSLLKLS FT TCAPFPSVKTLDSGLLPKQSYGDERQFESQSVVSVSDFHLKSVESVKIKSMSSAVYTGP FT LKVQQMKNYMDYLSASISATVSNLCKVLKDVYGVDPESAEKSGVYDVVKGKWIIKPKDK FT CHAWGVADLNNGEKVIVLLEWADGFPICGDWRRVAVSSDSLIYSDMGKLQTLLRCLKDG FT EPVLRMPKVTLVDGVLGCGKTKEILETVNFDEELILVPGKEACKMIIKRANKSGHVRAT FT KDNVRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFI FT NRVANFPYPKHFGHTCLHRREVRRLSLRCPADVTHFMNSKYDGKFLCTNDVIRSVDAEV FT VRGKGVFNPKSKPLKGKIITFTQSDKAELNERGYEEVSTFGEINTVHEIQGETFEDVSV FT VRLTPTALELISKSSPHVLVALTRHTKSFKYYCVVLDPLVKVCSDLSKVSDFILDMYKV FT DAGILXQLQVGSIFKGENLFVPCPKSGYISDMQFYYDTLLPGNSTILNEYDAVTMNLRE FT NNLNVKDCTIDFSKSVSVPRQQEEFFTPVIRTAAERPRSAGLLENLVAMIKRNFNSPDL FT TGILDIEDTAELVVNKFWDAYIIDELSGGNVTPMTSDAFHRWMAKQEKSTIRQLADFDF FT VDLPAIDQYKHMIKAQPKQKLDLSPQDEYAALQTIVYHSKQINAIFGPLFAELTRQLLE FT RIDSSKFLFYTRKTPEQIEEFLSDLDSTVPMEALVLDISKYDKSQNEFHCAVEYFIWEK FT LGLNGFLEEVWKQGHRKTSLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIAACLASMIP FT MDKVIKAAFCGDDSILDIPKGLDLPDIQSEANLMWNFEAKLYRKRYGYFCARYIIHHDR FT GAIVYYDPLKLISKLGCKHIKSLDHLEEFRMSLCDVSSSLNNCALFGQLNDAIAEVHKT FT AVNGSFAFCSIVKYLSD" FT CDS 3484..4860 FT /product="52KDa unknown in function protein" FT /db_xref="GOA:Q84126" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q84126" FT /protein_id="CAA57643.1" FT /translation="MQFYYDTLLPGNSTILNEYDAVTMNLRENNLNVKDCTIDFSKSVS FT VPRQQEEFFTPVIRTAAERPRSAGLLENLVAMIKRNFNSPDLTGILDIEDTAELVVNKF FT WDAYIIDELSGGNVTPMTSDAFHRWMAKQEKSTIRQLADFDFVDLPAIDQYKHMIKAQP FT KQKLDLSPQDEYAALQTIVYHSKQINAIFGPLFAELTRQLLERIDSSKFLFYTRKTPEQ FT IEEFLSDLDSTVPMEALVLDISKYDKSQNEFHCAVEYFIWEKLGLNGFLEEVWKQGHRK FT TSLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIAACLASMIPMDKVIKAAFCGDDSILD FT IPKGLDLPDIQSEANLMWNFEAKLYRKRYGYFCARYIIHHDRGAIVYYDPLKLISKLGC FT KHIKSLDHLEEFRMSLCDVSSSLNNCALFGQLNDAIAEVHKTAVNGSFAFCSIVKYLSD FT " FT CDS 4814..5725 FT /product="34KDa movement protein" FT /db_xref="GOA:Q84123" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/Swiss-Prot:Q84123" FT /protein_id="CAA57644.1" FT /translation="MGRLRFVVLLSIFPIKTFSEPCYTMALVLRDSIKISEFINLSAFE FT KLLPSALTAVKSVRIPKVDKIISYENDTLSDIDLLKGVKLVENGYVCLAGLVVTGEWNL FT PDNCKGGVSICLVDKRMKRANEATLGSYHTSACKKRFTFKIIPNYSVTTADALKGIWQV FT MTNIRGVEMEKGFCPLSLEFVSICVVYLNNIKLGLREKILNVTEGGPTELTEAVVDRFV FT EKVPMAARLKSFRSVNKKKPSNSSKFVNGKSRLNSRNKLNYENGDSDVGTSVVDDIVVG FT NGVSDIRIDDDCESFDAQSESY" FT CDS 5728..6204 FT /product="18KDa coat protein" FT /db_xref="GOA:Q84128" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q84128" FT /protein_id="CAA57645.1" FT /translation="MSYTITDPSKLAYLSSAWADPNSLINLCTNSLGNQFQTQQARTTV FT QQQFADVWQPVPTLTSRFPAGAGHFRVYRYELILEPLITFLMGTFDTRNRIIEVRNPQN FT PTTTETLDATRRVDDATVAIRSAINNLLNELVRGNGMYNQVSFETMSGLTWTSS" XX SQ Sequence 6618 BP; 1990 A; 1174 C; 1441 G; 2013 T; 0 other; gtatttttct attactacaa ttacaacaaa caattacaac aaaattcaca attacaacaa 60 caaacaaaca tggcacactt ccaacaaaca atgaacacca aagttactga ggctggtatc 120 ggcagaaaca gcctcattaa cgatttggct cagagacgtg tgtacgataa acctgtcgaa 180 gagctaaacc accgttctag acgcccaaag gttaactttt ccaaggtcat ttctcaggaa 240 cagattattc aagctactaa tgcgtacgct gagtttgaaa tcacctttta caacactcaa 300 ctcgctgtcc actcgatggc gggaggtctt cgagcactcg agctcgagta tcgtaggatg 360 caaatcccat ttggttctat tacgtatgac atcgcgggaa acttttcagc gcacatatat 420 aaaggacgag attacgtcca tagctgtatg cgtaatcttg acattcgcga tgtggctcgt 480 cacatcaatc aacaagatac tgtttctagt tatgtggcta ggctcgagag aagcaagagg 540 ggtcttccgg tttttcagca atcagctttt aataaatata tgagtgaccc ggatgctgtg 600 tgcagcgata aaaggtttca agagtgttct tactccgttg atcttccggg aaaaacatac 660 gctgtgggcc ttcatagtat ctatgatatt ccagcggatg agttcggagc tgcgttatta 720 cggaaggatg ttcacatatg ttatgctgct tttcatatta gtgagaatct gcttcttgag 780 actacgtctg ctccgctgga tgagattgga gcgacgaaat acaagtcagg ggataggtta 840 tccttcttca ttcaaaatga gagcacattg aattatgaac actcttataa aaacgtaatt 900 aaatatgttt gcaagacttt tattccagct tcaaataggt ttgtctacca taaggaattt 960 atgtgcacca gagttaacac atggttttgt aagttcacca aggtagatac ttatttcctt 1020 ttccggggag tgtatactag gggagaagat tctgaacaat tttacactgc tatggatgaa 1080 gcatgggagt ataagaaaac tttggcaatg cttaatagcg aaaggacgat ctttcgcgat 1140 cgcgctgcgg ttaactttag gtttcctaaa gttaaggata tggttattgt gccgcttttt 1200 gatggttccg tcacttcagg aaagatgaaa agaagagaag tcatggttaa caaggatttt 1260 gtttacacgg ttttaaatca catccgtacc tatcaagaca aagccttgac gtataaaaac 1320 gttctttcct ttgtcgagtc aataaggtct cgtgtgatta tgaatggtgt gactgcaaga 1380 tctgagtggg aagtagacaa gtctgtgtta cagccgttat ctatgacttt tcttttacag 1440 acgaagttgg ctgaagcaaa agatcaagtc gtacttaaaa aatttcaaaa aattgacgat 1500 acagttacta atcttttctg gaaacagatt agtgatgctg taggcgatct cttcccgtcg 1560 attaaggaaa ggctcattag cggtgggttt gtaaaagttg ctgagcaatc tttacaaatt 1620 aaaacgcctg atgagtatat cacctttgca gataaactgg ttatggaata taaagcaact 1680 gaagagcttc aacatctaga cattagtaag cctcttgaga gagccgagaa atattataat 1740 gctttatcgg aactatcggt tctcaaggaa tctgacgagt ttgatataac gcaattcaag 1800 aatttatgtg aagaaaagga cattgctcca gacgtcctgg cgaaagtgat cgtacccatc 1860 atgaagaacg aactcacact gccttttaac aatccaacgc ctgaagcatt atcggatgct 1920 ctttcaccgt tacccaaaga cttggatatg agatttagtc tgcttaaatt aagtacgtgt 1980 gcaccctttc caagcgttaa aactttagat agtggtttat taccaaagca aagctacggt 2040 gacgaaagac aatttgagag tcaatctgtc gtgtctgtat ctgattttca tcttaagagc 2100 gtcgagtcag taaaaatcaa aagtatgtcg tcagcggtct acacaggtcc cctcaaagtt 2160 caacagatga agaactatat ggattacctg tccgcatcga tttcggctac tgtttcaaat 2220 ttatgcaagg tgctaaagga tgtctatggt gtcgacccag agtctgcaga aaagtctgga 2280 gtctacgatg tagtcaaagg caaatggata ataaaaccaa aggataaatg tcacgcttgg 2340 ggtgttgccg accttaacaa tggcgagaaa gtcatcgtat tactcgaatg ggctgatgga 2400 ttccctattt gtggtgattg gcgacgagtg gccgtgtctt cagattccct tatttattca 2460 gatatgggaa aacttcagac gttgttaagg tgcttaaagg acggtgagcc tgtacttcgg 2520 atgccgaaag tcacgttagt agatggcgtt cttggttgtg gaaaaacaaa ggaaattctt 2580 gaaactgtga attttgatga ggagttaata cttgttcctg gtaaagaagc ttgtaaaatg 2640 attatcaaga gagctaataa gtctggacat gtaagagcaa caaaggataa tgtaagaact 2700 gtggattcgt tcttaatgca tttgaagcct aagacttata acaaactgtt tatcgatgag 2760 ggtttgatgt tacatactgg ttgtgtcaac tttctgatag cattgtccca ttgtcgtgaa 2820 gcaatggttt ttggtgatac tgaacaaatt ccctttataa acagagtggc aaatttccct 2880 tatccgaaac attttggcca cacttgttta catcgtaggg aggttaggag gttatcactt 2940 agatgcccgg cagatgttac gcattttatg aactccaaat atgacgggaa gtttttatgt 3000 acgaatgatg tgattcgctc agttgatgct gaagttgtta gagggaaagg ggtttttaac 3060 ccgaaaagca aaccgcttaa agggaaaatt atcaccttca ctcaaagtga caaagctgaa 3120 ctgaatgagc gtggttatga agaagtttca acttttggtg aaattaacac cgtacacgaa 3180 atccaaggtg agacctttga agacgtatcg gttgttcgtt tgacaccaac tgcattggag 3240 cttatatcaa agagttcacc gcacgttctt gttgcattga caagacatac taaaagcttc 3300 aaatattact gtgtggtgct cgatcctctc gtcaaagttt gctctgattt aagcaaggtg 3360 tcagacttta tactggatat gtataaggtc gatgccggga tcttatagca attacaggta 3420 gggagtatct tcaaaggcga aaatctattc gtaccatgtc ctaaatctgg ttatatttct 3480 gatatgcaat tttattatga cactttgtta cctggaaaca gcactatttt aaacgagtat 3540 gatgcagtga ctatgaatct tcgtgaaaat aatcttaatg tcaaggattg cacgatagat 3600 ttttctaaat ctgttagtgt cccgagacaa caagaagagt ttttcacacc agtcattcga 3660 actgctgctg aacgtccacg tagtgctggt ctccttgaaa accttgtggc aatgataaaa 3720 agaaatttta actctccaga tttaacgggt atattagata ttgaagatac tgccgaactt 3780 gtagttaata agttttggga tgcttacatt attgacgaac tttctggtgg aaatgttaca 3840 ccgatgactt cagatgcctt tcacaggtgg atggctaagc aggagaaaag tactatccgt 3900 caattagctg attttgactt tgttgattta cccgctattg atcaatacaa acatatgatt 3960 aaggcgcaac ctaaacagaa gcttgatctc agtcctcaag atgagtatgc tgcacttcag 4020 actattgttt atcactcaaa gcagataaat gcaattttcg gtcctctttt tgccgaatta 4080 actagacagc ttttagagag gatagacagt agcaaatttt tgttttacac ccggaaaacg 4140 cccgaacaga ttgaagagtt tctctcagat ttggactcga cggtgccaat ggaagctcta 4200 gtgttagaca tttcaaagta tgacaaatcc cagaacgaat tccattgtgc tgttgagtac 4260 ttcatttggg agaaacttgg tcttaatggc tttctcgaag aagtttggaa acagggacat 4320 aggaagacat ccttgaagga ttacaccgca ggaataaaga cttgtttatg gtatcaaagg 4380 aaaagcggag atgtaactac atttattggc aatacagtta ttatagctgc ttgtcttgcg 4440 tcgatgatac ctatggataa ggtaattaaa gctgcgtttt gtggagatga tagtattcta 4500 gacattccaa agggacttga tcttcctgat atccaatctg aagcgaattt gatgtggaac 4560 ttcgaggcaa aattatatcg taagcgttac ggatattttt gcgcgaggta tattattcat 4620 catgacagag gtgccattgt gtattacgac cctcttaaat taatttctaa gttaggttgt 4680 aaacacatca aatctttgga tcatttggaa gaatttagaa tgtcgctgtg tgacgtaagc 4740 tcttctttaa ataattgtgc gttatttggt caattgaatg atgcaattgc tgaggtccac 4800 aagaccgcag taaatgggtc gtttgcgttt tgtagtattg ttaagtatct ttccgattaa 4860 aaccttttca gaaccttgtt atacaatggc tctagtactt agggatagca ttaaaatctc 4920 tgaatttatt aatttatcag cctttgaaaa actactaccg tcagctttaa cggctgtcaa 4980 gtcggtacgt attccaaagg ttgataaaat tataagttac gagaatgata ctttgtctga 5040 tattgatttg cttaaaggtg tgaagttagt agagaatggg tatgtgtgcc ttgccggcct 5100 cgtcgtcact ggtgaatgga atttgccgga caattgcaaa ggtggtgtga gtatctgtct 5160 tgtagacaaa cgcatgaaaa gagctaatga agcaacactt ggctcttatc atacatctgc 5220 ttgcaagaag agattcacct ttaaaattat cccgaactac agtgtcacca ctgccgacgc 5280 tcttaaagga atatggcaag ttatgacaaa tattagaggt gtggaaatgg aaaagggttt 5340 ttgcccatta tctttggagt ttgtttctat ttgcgtggtg tatttaaata atataaaact 5400 cggactgaga gagaagattt tgaacgtaac agaaggaggg cccaccgaac ttactgaagc 5460 agttgttgat agattcgtgg agaaagttcc tatggctgct aggctcaagt cttttcgctc 5520 tgtcaacaaa aagaaaccta gtaacagttc taagtttgtt aatggaaaat ctagacttaa 5580 tagtcgtaat aaattaaatt atgaaaatgg tgatagtgat gttggtacta gtgttgtaga 5640 tgatattgtg gttggtaatg gtgttagtga tattcgtatt gatgatgatt gtgagtcatt 5700 tgacgcacaa tctgaatcgt attgaatatg tcttacacta ttacagaccc gtctaagctg 5760 gcttatttaa gctcggcttg ggctgacccc aattcactaa tcaacctttg taccaattct 5820 ctgggtaatc agttccaaac acaacaagct cgaacaactg ttcaacagca gtttgctgat 5880 gtttggcagc cggttcctac tttgaccagt aggttccctg caggcgctgg tcacttcaga 5940 gtttatcgct atgaacttat actagaacct ttaataactt tcttaatggg tacttttgat 6000 actcgtaata gaataatcga ggtaagaaat ccgcagaatc cgacaactac ggaaacatta 6060 gatgcaactc gtagagttga tgatgcaact gtagcaataa gatctgcaat aaataatcta 6120 ttaaatgagt tagttagggg aaatggtatg tacaatcaag tctcatttga gacgatgtct 6180 ggacttactt ggacctcttc ctaatcatat ttaggaaaat aacgttgata gtgttgaact 6240 agggctggtg catacgataa tgcatagtgg ctatccctcc acttaaatcg aagggtcttt 6300 cactgcggat atgtaggttt cctacggtga atataaaact tatatcccgt tgtgtacacg 6360 atagtacata gtgtttatcc ctccacttaa atcgaagggt tttgtgtcag acgcgtgtaa 6420 ggagtggtca accttacgac acattttaaa taatgcgtcc gtggtgcata cgataatgca 6480 tagtgtttgt ccctccactt aaatcgaagg gttgtgtata tgggtcatgc ggataaagtt 6540 atactggtgc agtataaccc gttatacaca ttaaattatg agggattcga attccccctt 6600 acctcgggta gaggccca 6618 //