ID X76931; SV 1; linear; genomic RNA; STD; VRL; 5669 BP. XX AC X76931; XX DT 13-JAN-1994 (Rel. 38, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 8) XX DE Cucurbit aphid-borne yellows virus genomic RNA XX KW coat protein; genomic RNA; ORF1; ORF2; ORF3; ORF4; ORF5; ORF6; protein P1; KW protein P2; protein P5; ribosomal slippage; viral genome. XX OS Cucurbit aphid-borne yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RX DOI; 10.1006/viro.1994.1429. RX PUBMED; 8030201. RA Guilley H., Wipf-Scheibel C., Richards K., Lecoq H., Jonard G.; RT "Nucleotide sequence of cucurbit aphid-borne yellows luteovirus"; RL Virology 202(2):1012-1017(1994). XX RN [2] RP 1-5669 RA Richards K.; RT ; RL Submitted (24-DEC-1993) to the INSDC. RL K. Richards, Inst. de Biol. Moleculaire des Plantes, 12 rue du General RL Zimmer, 67084 Strasburg, FRANCE XX DR MD5; ce5c310604bf08d1174344b6e6006ebe. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC2583970; 18937850. DR EuropePMC; PMC3728342; 23936244. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC4742674; 26847905. DR RFAM; RF01074; RF_site1. XX FH Key Location/Qualifiers FH FT source 1..5669 FT /organism="Cucurbit aphid-borne yellows virus" FT /isolate="N" FT /mol_type="genomic RNA" FT /db_xref="taxon:91753" FT CDS 21..737 FT /product="hypothetical protein P1" FT /note="ORF1" FT /db_xref="GOA:Q65967" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:Q65967" FT /protein_id="CAA54249.1" FT /translation="MQIESVKQQLIFRPTRRTSINDRKLNVANFLINHSFFLAINGTNL FT LRLFLARLPLLISEQLSGDYVYTPGASKRIILARFHRHCGAPLPSSSAVDLRLPASKDV FT ARFFLARHYSRALGERIQRNQTSLFRGYAEFAKFINVWCSSISHRLGEFTPRNFTNGSI FT FVDLSNLGHSLCDLVLAQQVHDRDAYTRLALHIHRIYGEDGGLDFWRLANFPSKSWPFN FT GERCLEGSVVQKELQR" FT CDS 142..2034 FT /product="hypothetical protein P2" FT /note="ORF2" FT /db_xref="GOA:Q65968" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q65968" FT /protein_id="CAA54250.1" FT /translation="MAPTYFAFFLLVCLCSSVSSYQGTMFIPLEPANASYWLDSTDIAV FT PPSHPQVQLIYDCPPQKMLRDFSSRDITLELWERGYNETRQAFSEAMQNLQNLLMSGVR FT QFHTGLESLLHVILQTAAYLWTSLIWATACATWYLLSKYTIEMLTLASLYISTVYMVKM FT AAWIFGDLPISLLKAGLSMVRGVSRALWYKRSYNAEKSVEGYLSFKIPQNPPKNSVLQV FT QYKDGSHAGYATCVTLYNGTNGLLTAYHVAVPGSKVVSTRNGNKVPLSEFRSIMESEKR FT DLVLLAGPPNWEGTLACKAVQFQSAQNLCKSKASFYAYDGEGWISSNAEIVGIAEGKTH FT ASVLSNTDAGHSGTPYFNGRTVLGVHVGGAKDENFNYMAPIPPVYGLTSPSYEFETTAP FT QGRLFTQEEIEELIEEFSFSEITSIMGHRRFHQMHDSQRHQADYEYESGNGQAAATAET FT TAPDATPAVGRTSGDAQSPAAPSSPRVNTYTPPNKRENRTASAVSPTTSASTDTLSEIK FT QVIMDKIDVHSIEKQVVQALADKAMKKPRSRRRGKRSSKNSQPTSQVSSMPSTPGNKAG FT KKPQDSTKSDPSPSFTTLNKRKARIGETKSANSTQKWVISQRASGGPSSAQKLN" FT CDS join(142..1485,1485..3305) FT /note="ORF3" FT /note="ribsomal slippage" FT /db_xref="GOA:Q65969" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q65969" FT /protein_id="CAA54251.2" FT /translation="MAPTYFAFFLLVCLCSSVSSYQGTMFIPLEPANASYWLDSTDIAV FT PPSHPQVQLIYDCPPQKMLRDFSSRDITLELWERGYNETRQAFSEAMQNLQNLLMSGVR FT QFHTGLESLLHVILQTAAYLWTSLIWATACATWYLLSKYTIEMLTLASLYISTVYMVKM FT AAWIFGDLPISLLKAGLSMVRGVSRALWYKRSYNAEKSVEGYLSFKIPQNPPKNSVLQV FT QYKDGSHAGYATCVTLYNGTNGLLTAYHVAVPGSKVVSTRNGNKVPLSEFRSIMESEKR FT DLVLLAGPPNWEGTLACKAVQFQSAQNLCKSKASFYAYDGEGWISSNAEIVGIAEGKTH FT ASVLSNTDAGHSGTPYFNGRTVLGVHVGGAKDENFNYMAPIPPVYGLTSPSYEFETTAP FT QGRLFTQEEIEELIEEFSFSEITSIMGHRRFHQMHDSQRHQADYEYESGKRAGGGDRRN FT NRTRCHPRGWAHKWRRTVSCCSLFPEGQHVHTSEQTGKPHCFCSIPHHQCFYRHFVGNQ FT TGNNGQNRCPFNREASGPSLGGQSHEETEVAQTRQEKFEELATDFSSFFDAQYTWEQGG FT EEAPGFDKVGSLPQFYHAKQKKSSNWGDKICKQHPEMGDLTKGFGWPQFGAKAELKSLR FT LQAARWLERAQSVKIPSSEEREHVIERCCRAYQAAKTNGPMATRGDRLSWDNFLQDFKQ FT AVLSLEMDAGIGVPYIAYGKPTHRGWVEDKKLLPILARLTFNRLQKMLEVRYVDLSPAE FT LVRRGLCDPIRVFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQNQNKREIALWR FT VVPSKPGFGLSTDEQVAEFMQILSAQVGLTPSDLITEWRAHMIATDCSGFDWSVSDWLL FT EDDMEVRNRLTLDLNETTRRLRSWLYCISNSVLCLSDGTLLAQRVPGVQKSGSYNTSSS FT NSRIRVMAAYHCGAEWAMAMGDDALESACSNLERYKSLGFKVEESSKLEFCSHIFEKED FT LAIPVNKAKMLYKLIHGYEPECGNVEVLINYLAACFSILNELRSDPSLVETLHQWLVAP FT VQPQKI" FT CDS 3505..4104 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:Q65970" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:Q65970" FT /protein_id="CAA54252.1" FT /translation="MNTVAARNQNAGRRRRRNQRPARRDRVVVVNPIGGPPRGRRQRRN FT RRRPNRGGRARRGSPGETFVFSKDNLTGSSTGSITFGPSLSESPAFSSGILKAYHEYKI FT IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKSGLRRWTAKQINGMEW FT HDATEDQFKILYKGNGSSSVAGSFRITIKCQVQNPK" FT CDS 3505..5508 FT /transl_except=(pos:4102..4104,aa:Tyr) FT /product="hypothetical protein" FT /note="ORF6" FT /db_xref="GOA:Q65972" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q65972" FT /protein_id="CAA54254.2" FT /translation="MNTVAARNQNAGRRRRRNQRPARRDRVVVVNPIGGPPRGRRQRRN FT RRRPNRGGRARRGSPGETFVFSKDNLTGSSTGSITFGPSLSESPAFSSGILKAYHEYKI FT IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKSGLRRWTAKQINGMEW FT HDATEDQFKILYKGNGSSSVAGSFRITIKCQVQNPKYVDGSSPPPPSPSPTPPPPPPPQ FT PQPQPCAQRFWGYEGNPQNKILTAENSRNIDSRPLNFVQMYKWEDEKWDKVNLQAGYSR FT NDRRCMETYLTIPADKGKFHVYLEADGEFVVKHIGDELDGSWLGNIAYDVSQRGWNVGN FT YKGCKITNYQSNTVFVAGHPDATMNGKSFDTARAVEVDWFASFELECDDEEGSWAIYPP FT PIQKDSSYNYTVSYGNYTEKYCEWGAISVSIDEDNNGNEPRRIPRRGVMAWSTPEPSFS FT GDDSQRQDFNTPSLEERGSDALESEEKKEEDNLLDLEEENIPDVDDDDLWKGISRASEA FT GTAEDDRASTSSRLRGNLKPKGLPKPQPTRTITEFNPGPDLIEVWRPDLAPGYSKADVA FT AATVLAGGSVHEGRDMLERREAKVMDSRKKWGILSSTSSLTSGALKKLSAQSEKLATLT FT TGERVQYQRLKNSMGSTVAAEYLEKVLADKTS" FT CDS 3533..4108 FT /product="hypothetical protein P5" FT /note="ORF5" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q65971" FT /protein_id="CAA54253.1" FT /translation="MQGGEGEEISALRGATAWLWSTPLGDHRAEDDNEETADALIEEAE FT LEEEAQAKHLYFQRTISRAVPQEVSPSGRLFQRAQHSALEYSRPTMNIRSSWSSWSSSP FT RPLPPPRVPSLMSWTPTASLAPSNPRLINLESPRVDCDVGPLSRSTGWNGMMQPKTSSR FT SSIKGMDLPRLRAASESPSSARSRTRNR" XX SQ Sequence 5669 BP; 1547 A; 1430 C; 1412 G; 1280 T; 0 other; acaaaagata cgagcgggtg atgcaaattg agtctgtcaa gcaacaatta attttcagac 60 ctacccgacg cacgagcata aacgatcgca agttaaacgt agctaacttt ctgatcaatc 120 actctttctt tttagcgatc aatggcacca acctacttcg cctttttctt gctcgtctgc 180 ctctgctcat cagtgagcag ttatcagggg actatgttta tacccctgga gccagcaaac 240 gcatcatact ggctcgattc caccgacatt gcggtgcccc cctcccatcc tcaagtgcag 300 ttgatctacg actgcccgcc tcaaaagatg ttgcgcgatt tttcctcgcg cgacattact 360 ctagagctct gggagagagg atacaacgaa accagacaag ccttttcaga ggctatgcag 420 aatttgcaaa atttattaat gtctggtgtt cgtcaatttc acacaggctt ggagagttta 480 ctccacgtaa ttttacaaac ggcagcatat ttgtggacct ctctaatttg ggccacagcc 540 tgtgcgactt ggtacttgct cagcaagtac acgatcgaga tgcttacact cgcctcgctt 600 tacatatcca ccgtatatat ggtgaagatg gcggcttgga tttttggcga cttgccaatt 660 tcccttctaa aagctggcct ttcaatggtg agaggtgtct cgagggctct gtggtacaaa 720 aggagctaca acgctgagaa atccgtagag ggttatcttt cattcaaaat tccacagaac 780 ccccccaaaa actcggtctt gcaggtccaa tataaggacg gatcgcatgc cgggtatgct 840 acttgtgtga cgctgtacaa tggaacgaat gggcttctca cggcctatca tgtcgctgtc 900 ccaggtagca aagtcgtctc caccaggaac ggaaacaagg ttcctctctc tgaattcaga 960 tccattatgg aatctgaaaa gagggatctt gtgctgctgg cgggtccccc aaactgggaa 1020 ggcaccctag cctgcaaagc agttcagttc caatctgccc agaacctttg caaatcaaag 1080 gcctccttct atgcttacga cggagaggga tggatctcat ccaatgctga aattgttggc 1140 attgcggagg gcaaaaccca tgcatctgtg ttgagcaata cggatgctgg tcacagtggc 1200 accccatatt tcaatggcag aacagttttg ggtgttcacg ttggtggagc caaagacgaa 1260 aacttcaatt acatggcccc cataccgccc gtttatggtc tcacaagccc cagctacgaa 1320 tttgagacca cggcccccca aggacgcctg tttacacagg aggagataga agaactcatt 1380 gaagaatttt ctttcagtga gatcacgtcc ataatggggc atcgccgatt tcatcaaatg 1440 cacgactcgc agcgacatca agctgattat gaatacgagt cgggaaacgg gcaggcggcg 1500 gcgaccgccg aaacaaccgc acccgatgcc acccccgcgg ttgggcgcac aagtggagac 1560 gcacagtctc ctgctgctcc ctcttccccg agggtcaaca cgtacacacc tccgaacaaa 1620 cgggaaaacc gcactgcttc tgcagtatcc cccaccacca gtgcttctac cgacactttg 1680 tcggaaatca aacaggtaat aatggacaaa atcgatgtcc attcaataga gaagcaagtg 1740 gtccaagcct tggcggacaa agccatgaag aaaccgaggt cgcgcagacg cggcaagaga 1800 agttcgaaga actcgcaacc gacttctcaa gtttcttcga tgcccagtac acctgggaac 1860 aaggcgggga agaagcccca ggattcgaca aagtcggatc cctcccccag ttttaccacg 1920 ctaaacaaaa gaaaagctcg aattggggag acaaaatctg caaacagcac ccagaaatgg 1980 gtgatctcac aaagggcttc gggtggcccc agttcggcgc aaaagctgaa ctaaaatcgt 2040 tgcggctaca agccgcgcgt tggctggagc gtgcccagtc agttaaaatc ccctcatctg 2100 aggagcggga gcacgttata gagagatgct gtcgggcgta tcaagctgct aaaactaatg 2160 gcccgatggc gacgagagga gatcgacttt cctgggataa cttcctacag gatttcaaac 2220 aggcggtcct ctcgttggaa atggacgcag gcataggagt tccgtacata gcttacggca 2280 agccaaccca ccgtgggtgg gttgaagaca agaaactcct tccgatattg gctcgtctca 2340 ccttcaaccg gttacagaag atgttggagg taagatatgt tgacttatcg cctgcggagc 2400 ttgtgcgaag gggtctctgt gaccctattc gagtatttgt aaaaggtgaa ccgcacaagc 2460 aagcaaaatt agatgaaggc cgctaccgcc tcatcatgag cgtctctcta gttgaccaat 2520 tggtagcccg ggttttattc caaaatcaaa acaagcgcga gatagcgttg tggagagtgg 2580 ttccctccaa acccggtttt ggcttgtcta cggatgagca agtggcggag ttcatgcaga 2640 ttctctccgc ccaagtcggg ctaacgcctt cggatctgat caccgagtgg cgagcccata 2700 tgatagcaac tgactgctcc ggttttgact ggagcgtttc ggactggctc cttgaagatg 2760 atatggaggt ccgaaaccgc ctgacgctcg atttaaacga gaccacgcgc cgtttgcgca 2820 gctggttata ttgcatatcg aatagcgtcc tctgcctttc agatggaaca ttattagcgc 2880 agagagtccc gggcgtgcag aagagtggca gctacaatac gtcatcgagt aattcccgaa 2940 tccgggtgat ggctgcctac cactgcggcg cagaatgggc tatggcgatg ggcgacgatg 3000 ccctcgagtc agcttgctcg aacctcgagc gttacaaatc gctcggtttt aaagtcgagg 3060 agtcctcaaa actggaattc tgttctcaca tctttgagaa agaggacctc gccattccgg 3120 tcaacaaggc caaaatgctc tataagctta tacatggcta tgaaccggaa tgcggcaatg 3180 tggaagtcct gatcaattat ttggccgcct gcttttctat tcttaatgaa ttgcggtctg 3240 atccttccct tgtcgaaact ctccatcagt ggctggttgc tccagtacag ccacaaaaga 3300 tataagggga gtataaagaa cactagccaa gcacacacga gttgcaagca ttggaagtct 3360 gagtctcgtt accaagagtc cacacaatag attataagtt tctcgcagga ttttcaagcg 3420 gtctattgtc tgcaataccc atcacggtaa tcggactcta ttttgtctac ctaaagattt 3480 cagcacacgt gcgttcaatt gttaatgaat acggtcgcgg ctagaaatca aaatgcaggg 3540 aggcgaaggc gaagaaatca gcgccctgcg cggcgcgacc gcgtggttgt ggtcaacccc 3600 attgggggac caccgcgcgg aagacgacaa cgaagaaacc gccgacgccc taatcgagga 3660 ggcagagcta gaagaggaag cccaggcgaa acatttgtat tttcaaagga caatctcacg 3720 ggcagttcca caggaagtat caccttcggg ccgtctcttt cagagagccc agcattcagc 3780 tctggaatac tcaaggccta ccatgaatat aagatcatca tggtccagct ggagttcatc 3840 tccgaggcct cttccacctc ctcgggttcc atctcttatg agttggaccc ccactgcaag 3900 cttagctccc tccaatccac gattaataaa tttggaatca ccaagagtgg attgcgacgt 3960 tggaccgcta agcagatcaa cgggatggaa tggcatgatg caaccgaaga ccagttcaag 4020 atcctctata aagggaatgg atcttcctcg gttgcgggca gcttcagaat caccatcaag 4080 tgccaggtcc agaacccgaa ataggtagac ggcagttccc cccccccccc aagtcctagt 4140 ccaaccccac cacctccacc accccctcag cctcaacccc agccttgcgc ccagcgtttt 4200 tggggttatg aaggcaaccc acaaaataaa atactcacgg ctgaaaattc aaggaatatt 4260 gattcccggc cgttgaattt cgtgcaaatg tacaagtggg aagatgagaa gtgggacaag 4320 gtcaacttgc aagccggata ttctcgcaat gaccgacgtt gtatggagac gtacctcaca 4380 attccagcag ataaaggaaa atttcatgtt tatcttgaag ctgatggtga gttcgtcgtc 4440 aagcacatcg gtgacgagct tgacggtagt tggctcggaa atatcgctta tgatgtttcc 4500 caaagaggtt ggaacgtagg gaattacaaa ggctgtaaaa tcacaaatta ccaatctaat 4560 acagtttttg tggcaggaca tcccgacgca acaatgaatg gtaaaagttt tgacactgcg 4620 cgggccgttg aagtcgattg gttcgcttcc ttcgaattag aatgtgatga tgaggaagga 4680 agctgggcta tatacccccc tcccatacag aaggattctt cgtataatta caccgtctca 4740 tacgggaatt acacggagaa atattgcgag tggggggcaa tttcggtatc aatcgacgaa 4800 gataataatg ggaacgagcc aagaagaata ccacgcaggg gggtaatggc gtggtccacc 4860 cctgaaccat ctttttcagg ggatgatagt caaagacaag actttaacac tccttcgctt 4920 gaagagcgag gttccgatgc cctggaatcg gaagagaaga aggaagagga caaccttctt 4980 gatcttgagg aagagaatat acccgacgtt gatgatgacg atttatggaa gggtatttcc 5040 cgtgcctccg aagccgggac tgccgaggat gatcgagcgt ctacaagctc tcgtcttcgc 5100 ggcaacctca agccaaaggg gctaccaaaa ccacagccta ctcgaaccat taccgagttc 5160 aatcctggac ctgatttgat agaggtgtgg aggcccgatc tagcacctgg atactccaaa 5220 gcggacgtcg ccgcagcgac agtgctcgca ggaggaagtg tccacgaggg aagagatatg 5280 ctcgagcgta gagaagcaaa agtaatggat agtaggaaga aatggggaat cctctcctca 5340 acttcctctc ttactagcgg agcattgaag aagctcagcg cacaatcgga aaagctcgcc 5400 acattgacaa ctggcgagcg agtgcaatat caacgactta aaaactcaat gggttcgact 5460 gttgcagctg agtatctcga aaaggtgctt gctgataaaa cctcctaaag agttcctact 5520 actctgaagt agcgcggcac cggaatacgc ggcgaagctc aatccggaaa ctcaagaacg 5580 agagtataaa cgttaacgac tccgaaagga taggcaacga acgttcccac gtagtggaaa 5640 cagggggatt ccccctggcg tttcggtgt 5669 //