ID X69552; SV 1; linear; genomic DNA; STD; PLN; 4885 BP. XX AC X69552; XX DT 30-MAR-1993 (Rel. 35, Created) DT 12-JUN-2006 (Rel. 88, Last updated, Version 6) XX DE V.carteri copia-like retrotransposon sequence Osser XX KW copia-like retrotransposon; reverse transcriptase. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-4885 RA Lindauer A.; RT ; RL Submitted (03-DEC-1992) to the INSDC. RL A. Lindauer, Universitaet Regensburg, Lehrstuhl fuer Genetik, RL Universitaetsstr. 31, 8400 Regensburg, FRG XX RN [3] RP 1-4885 RX DOI; 10.1016/0014-5793(93)80559-D. RX PUBMED; 7681411. RA Lindauer A., Fraser D., Bruderlein M., Schmitt R.; RT "Reverse transcriptase families and a copia-like retrotransposon, Osser, in RT the green alga Volvox carteri"; RL FEBS Lett. 319(3):261-266(1993). XX DR MD5; cc0a0572e673eaad1d1c69b426c50aaf. DR EuropePMC; PMC2666490; 19153256. XX FH Key Location/Qualifiers FH FT source 1..4885 FT /organism="Volvox carteri" FT /strain="HK10" FT /mol_type="genomic DNA" FT /db_xref="taxon:3067" FT misc_feature 1..5 FT /note="target site duplication" FT repeat_region 6..202 FT /rpt_type=LONG_TERMINAL_REPEAT FT /note="5'LTR" FT regulatory 104..110 FT /regulatory_class="TATA_box" FT primer_bind 203..214 FT CDS join(242..3397,3399..4631) FT /gene="Osser (retrotransposon):gag,pol (prot,endo, FT RT,RNaseH)" FT /product="gag,protease,endonuclease, reverse FT transcriptase,RNaseH" FT /note="1bp insertion at position 3398" FT /db_xref="GOA:Q06035" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR013103" FT /db_xref="InterPro:IPR025724" FT /db_xref="InterPro:IPR036397" FT /db_xref="InterPro:IPR039537" FT /db_xref="UniProtKB/TrEMBL:Q06035" FT /protein_id="CAA49283.1" FT /translation="MSERMTYTERLNVANRTTWLIRTKAEIIKLKAGSALVNALDESNS FT TSVERHQTACAVICGLLDDKDLPLLEKHKDARDLLNALDERYKGLMEHHVTRLWRDFNA FT FKMQPNQSLRDYIKRIKDIVEELTACKQPVADANAVLIALKGLPSRYDPYVAPYYSTTL FT MPKTLDELENNLLGVETVIDERASTSVLPNTLFAGKGDQDRGNERGGGNSRGGGYRRGN FT KYGGGNGIRCFQLQGNRSLRQGMPKPKKECAKCHLLGHTAEECRNRRRRGGDGGAGNDG FT GYAAAVVERPLFMLELGDSPSRTVAAEMLELESTPAFTVSPSAASGSTETSGPQLRELD FT ATWYLDSGAIYHVTPDARSLRDYKPCDPIPLKCGGGEVHYAVGYGDLLVEVVKEQTDCY FT SFHIGNNYYHKQKGPVVIKIRNVYYVPGFKFRLLSLKQLTNNGAQFSGSGTSMDVWNSR FT ERWSLYAHCKYSVYSVKVKEKLPRMQSGGPVASVHLVADRARLWHSRFGHLSYGNLARL FT ADEEMVAGLDVTPKKFREVGAAVCEGCVMGKHSRKPFPESHSSVGRALERVHMDLAGPM FT SVESYGGNSYVATFLDEYTGLSVVSFLKLKSEAIAVVKSVLTLLENQCGQKVKEVRTDR FT GREYLNAELREFYGERGIVHQTSAPYTPQQNGIAERLNRTLMEKVRCMLIESGLPSRGW FT ALAMHTANYLRNRSPVHGLKGTPFERFYGQKPDVSDLRVFGCVAYIRVPDHQRRKIDPV FT SMKGVFVGYEPESKAYRVLMPDGRQLVSREVKFDERAFGLMSVKGLQYRVEVVRDEDEE FT SETGWMQEGEEESEDSSDVQSSISFDVFEGSATVGANDSSGAEPASTSGGPVTVGANDS FT SGAEPASASGGVGTVGANDSSGAGSASASGGVGSVGGNNSSSTLSAEGGNEQPRNPPQL FT RTSTRSNKGVPPVKLNLSAVNGVPLTYEEAMKSPEAPMWKQAMDEELASIRANEVWRLE FT IPPKSVRPLPVKWVFSLKKDEHGEIVRYKARLVAKGFAQVEGRDYEEVWAPVSKHTTLR FT ALLSVAARDLELHQLDVKTAFLNGELEETVYIQQPPGYVEGEPYLACKLEKALYGLKQA FT PRAWYARLRSELEAMNFTVSQADPGLFYRDVLGERVYLLVYVDDLLIAAKDINIVRQLK FT DKLKSILMCVTWVRPVCFLGFEIERNRAERTMKVSQKRYAKGLVEKYGLEDANGRAVPL FT SHGTTLHSAGQPLDVRQFRFGELIGSLLYLSVGTRPDIAYSVGALARHMSKPTVEHWQA FT AKGVVRYIAGTAGLGIVFSPKSSNPSLHGYCDSDYAACVDTRRSTTGYVFLNAGGAVSW FT SSRLQPTVATSTAEAEYMASGAATKEALWYRHLARDLQMRVSSVPILCDSQAAIKIINN FT PISSARSKHIDVLHHFVRERVARGEIVFSYCKSADMVADCLTKPLPLPQFKKCIQAMGL FT R" FT misc_feature 3398 FT /note="1bp insertion (ribosomal frameshifting:?)" FT misc_feature 4679..4683 FT /note="PPT" FT repeat_region 4684..4880 FT /rpt_type=LONG_TERMINAL_REPEAT FT /note="3'LTR" FT misc_feature 4881..4885 FT /note="target site duplication" XX SQ Sequence 4885 BP; 1110 A; 1085 C; 1492 G; 1198 T; 0 other; atatctgttg tagaactaag tttgtggcgg tcagctctct ggacgaactg gtttccgtat 60 catgccgtgc agatcgcacg ggcatctcta gggcaccttg ccctatatta gcttccgctt 120 atctgtctaa cttgtaacac aacgacgtgc taaggttgta tgcaatacgt gctaagcaac 180 ggcatagtta ccattcacaa caggttatga gccccgcata aggcgggaag caacgataca 240 aatgtctgag cgaatgacct acacggaaag gctaaacgtg gcaaatagga ccacttggct 300 catacgaact aaagcagaga tcatcaagct gaaagctgga agtgcgctcg taaatgcgct 360 tgacgaaagc aattctacct cggttgaacg acatcagacg gcgtgcgccg tcatctgcgg 420 gctactggac gataaagatc tcccgctact tgagaagcat aaggacgcgc gggacttgct 480 caacgcgcta gacgaaaggt acaaggggct aatggagcat cacgtgaccc ggctgtggag 540 ggactttaac gcgttcaaaa tgcagcctaa tcaaagccta agggactaca tcaagcggat 600 taaggacatc gtcgaggagc tgactgcatg caagcagccg gtagccgatg cgaacgcggt 660 cttgattgcc cttaaggggc tcccctccag atatgaccca tacgttgcac cgtattatag 720 cacaacgttg atgccgaaga cgctggatga gctcgagaac aacctgttgg gcgtcgagac 780 cgttatcgac gaacgagcat caacgagcgt actgcccaac accctcttcg ccggtaaggg 840 cgatcaagat aggggcaacg agcgcggcgg tggtaacagc cgcggtggag gctacaggcg 900 tggaaacaag tacggcggcg gtaacggcat taggtgtttt caactgcaag gaaatcggtc 960 actgcgccaa ggaatgccca agcctaagaa ggagtgcgcg aagtgtcatc tgttgggtca 1020 tactgccgaa gagtgtagga acagacgtcg ccgtggtgga gatggaggtg ctggaaacga 1080 cggcggatat gccgccgccg tggttgagcg cccgctgttc atgctggagc tgggggattc 1140 gccatcgcgt acggtggcgg ctgaaatgct tgagctagaa tccactccgg cgtttactgt 1200 gtcaccgtcg gctgcgtcgg gcagtacgga gacgtcaggg ccacagctgc gggagctaga 1260 cgctacctgg tacctggact ctggcgctat ctaccatgtc acgccggacg cacggtcact 1320 aagggactac aaaccttgtg acccgattcc gctgaagtgt ggcggaggtg aggtgcacta 1380 cgcggttggt tatggggacc tgttggtaga agttgtgaag gaacaaactg actgttattc 1440 attccacatc gggaataact actaccataa gcagaagggc ccagtagtaa tcaagattag 1500 aaacgtgtac tacgtgcctg ggtttaagtt tcggctcttg tcgcttaaac agctgacgaa 1560 caatggtgcg cagttttcgg gctctgggac gagcatggat gtttggaatt cccgggaacg 1620 atggtcttta tatgcacatt gcaagtattc tgtttattcc gtcaaagtca aggagaagct 1680 gccgagaatg cagtctggtg gaccggttgc gtcagtacat cttgtagcag atcgcgcacg 1740 actgtggcat tcacgctttg gccacctgag ctacggtaac ttggcgcgac tggctgacga 1800 agagatggtc gctggccttg acgtgacacc gaagaagttc cgagaggttg gtgcggcggt 1860 gtgtgaaggg tgtgtaatgg gcaagcattc taggaaaccc tttccggagt cacactccag 1920 tgtgggccgg gctctagaac gagtccatat ggacctcgca gggccgatgt ctgtagagtc 1980 ctatggggga aatagctatg tcgccacttt tctggacgag tacaccgggc tttcggtagt 2040 gtcgttcttg aagctgaaga gtgaggcaat agctgtcgtt aagtccgtgc tgaccctgtt 2100 ggaaaaccag tgtggacaga aggtaaagga ggtacgtacg gatcgaggaa gggaatattt 2160 gaatgctgag ctgagggagt tctacggtga gcgggggatt gtgcatcaga cctctgctcc 2220 ttacaccccc cagcagaatg gtattgctga gcgcctgaat cgcacgctga tggagaaagt 2280 taggtgcatg ttaatcgaga gtggcctgcc ttcacgtggg tgggcattag cgatgcatac 2340 ggcaaattat ttgcgcaatc gttcccctgt ccatggtctc aaagggacgc cgtttgagcg 2400 tttctatggg caaaagcccg acgtgtcaga tctgcgtgtg tttggctgtg tggcttatat 2460 tcgagtacct gatcaccaac gcaggaagat cgacccggta tctatgaagg gtgtttttgt 2520 gggttacgag ccggagtcta aggcgtaccg tgtgcttatg ccggatggac gacagctagt 2580 cagccgtgag gttaagtttg atgagcgtgc cttcggtttg atgagtgtta agggcctgca 2640 gtaccgggta gaggtggtca gggatgaaga tgaagagtct gagacgggat ggatgcaaga 2700 gggtgaagag gagagtgaag atagttctga tgtgcagtcg tctatctcgt ttgatgtctt 2760 tgagggttcg gccaccgtgg gagcaaacga tagctccggt gccgagcctg cttctacgtc 2820 tgggggtccg gttaccgtgg gagcaaacga tagctccggt gccgagcctg cttctgcgtc 2880 tgggggcgtg ggtaccgtgg gagcaaacga tagctccggt gccggatctg cttctgcatc 2940 tgggggcgtg ggttctgtgg gagggaataa tagttccagt accctgtccg ctgagggggg 3000 gaatgagcaa ccgagaaacc ctccacaact tcgtacctca acgcgttcta ataagggagt 3060 gccgcctgtt aagttgaatt tatctgcggt taatggagtg ccgttgacgt atgaggaagc 3120 aatgaaatcc ccagaagcac ctatgtggaa gcaagccatg gatgaagagc ttgcgtctat 3180 cagggcaaat gaagtatggc gcttagaaat tcccccgaag agtgtacgtc ccctacctgt 3240 taagtgggta ttttctttga agaaggatga gcatggtgaa attgtgcgtt ataaggcgcg 3300 tttggtcgcg aaggggtttg ctcaagtgga aggccgggat tatgaggagg tctgggcacc 3360 agttagcaag catactacgt tgcgtgcttt gctgtctggt tgcggctcgt gatcttgagt 3420 tgcaccagtt agatgtcaag actgcttttc tgaatggtga gctggaagaa acggtttata 3480 tccagcagcc acctggctat gttgagggcg aaccttattt ggcatgcaag ttggagaagg 3540 ctctgtatgg gctgaaacag gccccccgtg cttggtatgc gcgacttagg tcggagttag 3600 aagctatgaa tttcactgtg tcccaagctg atccgggatt gttttaccgg gatgttctag 3660 gagagcgcgt atatttgctg gtctatgtgg atgaccttct aattgctgcg aaggatatta 3720 atatcgtacg tcagttgaaa gataagttga aatccatctt gatgtgcgtg acttgggtga 3780 ggcccgtgtg ttttttgggt tttgagattg agcgtaatcg ggccgagcgt acaatgaagg 3840 tatcacagaa gaggtacgcc aaggggctag ttgagaagta cgggctggaa gatgccaacg 3900 ggcgtgctgt gcctttgtcg cacggcacta ccttgcattc agctggccaa ccacttgatg 3960 tacggcaatt ccggtttgga gagcttattg ggagtctgct atatttgtcg gtgggcacta 4020 ggcctgatat tgcatattcc gtgggagctc ttgcccgtca catgtccaag cccacggtgg 4080 agcattggca ggcggcgaaa ggggttgttc ggtacattgc tggtacggct ggtctgggta 4140 ttgtcttttc tccgaagtcg agtaatccat ctttgcatgg gtattgcgac tcggactatg 4200 cagcatgcgt agatacgcgt cgttcaacta ccggctacgt gtttttgaat gctggtggag 4260 ctgttagttg gtcaagtcgt ttgcagccta ccgtggctac gtcaaccgcg gaggcagagt 4320 atatggcgag tggagcggca actaaggagg ctttgtggta ccgtcacttg gcacgtgatt 4380 tacagatgcg ggtgtcttcg gtacctatct tgtgcgatag tcaggcggca atcaagatca 4440 tcaacaatcc gatttcgtcc gctaggtcaa agcacatcga cgtgcttcac catttcgttc 4500 gcgagcgtgt agcgcggggt gagatcgtgt tttcctactg caagtcggcg gacatggtcg 4560 ctgattgtct gacgaagcct ttgcctcttc ctcagttcaa gaagtgcatc caggcgatgg 4620 gtctgcgttg agaagttttg cctttggagt ttttcagttc ccagaggtct gcccgcgtgg 4680 gagtgttgta gaactaagtt tgtggcggtc agctctctgg acgaactggt ttccgtatca 4740 tgccgtgcag atcgcacggg catctctagg gcaccttgcc ctatattagc ttccgcttat 4800 ctgtctaact tgtaacacaa cgacgtgcta aggttgtatg caatacgtgc taagcaacgg 4860 catagttacc attcacaaca atatc 4885 //