ID X64886; SV 1; linear; unassigned RNA; STD; VRL; 6033 BP. XX AC X64886; S46268; XX DT 24-MAR-1992 (Rel. 31, Created) DT 28-NOV-2005 (Rel. 85, Last updated, Version 6) XX DE Red Clover Mottle Virus genomic RNA sequence for bottom component RNA XX KW viral protease; viral replication. XX OS Red clover mottle virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-6033 RA Lomonossoff G.P.; RT ; RL Submitted (10-MAR-1992) to the INSDC. RL Lomonossoff G.P., Dept of Virus Research, John Innes Institute, John Innes RL Centre, Colney Lane, Norwich NR4 7UH, UK XX RN [2] RX PUBMED; 1402822. RA Shanks M., Lomonossoff G.P.; RT "The nucleotide sequence of red clover mottle virus bottom component RNA"; RL J. Gen. Virol. 73:2473-2477(1992). XX DR MD5; 170f805fe104a7b5a39002628b933b5d. DR EuropePMC; PMC2861173; 20229114. XX FH Key Location/Qualifiers FH FT source 1..6033 FT /organism="Red clover mottle virus" FT /strain="S" FT /mol_type="unassigned RNA" FT /cell_line="RNA isolated from virions" FT /db_xref="taxon:12262" FT CDS 270..5864 FT /note="long ORF encoding polyprotein bottom component RNA" FT /db_xref="GOA:P35930" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/Swiss-Prot:P35930" FT /protein_id="CAA46104.1" FT /translation="MYMLTFEPGLCVAGIIRQVRSNPFMHVVQAYARTTETYREDIEMT FT KSMLKLKADEPLLVMSIVAAAMDFQTMVMAPIEMEASEFLYGFYAERMSYIVTNRGMSE FT LHEYIQLQCQRHLLVKVEIDGQYLVQEHEYEAQGFNIKRVKELITDVATWVPKKVKGMI FT GWSVDAVLDSFQEYFYKVITERIPMAMKVCSWVATVWDQIKTWIEDAMTAMSSFLQGCN FT ELLTWGLATLAACCALNVLERILIFMEFLDESIDIAGIFLRTGVVAAACYHFSSTAKGF FT TEMMSVLSVATTAVAAVVCANYFGGSKTKKVNAQGNPVDLLERIAAGLSSISQDSLVSL FT GKSCSAINSIATSYGHLRNFAGRVLTMLRDFAWKILGLETRFLADAALVFGEDVDGWLQ FT RISALREAYVSKAYSSQDEVFEMNVLLERGYKMRHLMATGSRVSPAIGNMLMQGLADLE FT RLHRNAAVQGVKGVRKIPFTVFAHGNSRCGKSLLIGKLISDFQEHKGLGEDTVYSRNTT FT ETHWSGYRRQPIVVIDDFAAVESDISAEAQLINLVSSTPYSVVMAAIEEKGMTFDSQFI FT FASTNFLEVSPNGKIRCDDAFRNRRHVLIDVKLKPEVEYQSDDFTANQSYNILEHSHGR FT YNVVATFDNYEELLAYCLTKHEQHEAEQEANLAKLRRTNKFESHFKKFEQVLQLSTYFS FT SSIERIKREALATTDGADDYHLLYVVPRNGSYLHVAANKDFQIQQWYGPVEEVAEEDIL FT RASERMLLGAYEFLLLSTELNVVVKNHLPELICTDNYDHNLEFCGVVGDPVYHQQLLKN FT IRALKPWHRAVLFGIGTLMGAKNPTPWYKRMWEGIKDVLYKAYSTEISQWPVPLKITCG FT IVLVGIVGAGFWKTVSVLTNAGNGAGLVGAAVNSFSVVSTAEAQSRKPNRFEVQQYRYK FT NVPLTRRSWGNAQMSLDQSTVSILNKCHAKFIIASQHAQIVLVPGRRFIGYSHFFCNLK FT HPLMVQIETADRTYFHRYQPENMEYIEDSELCVYHSSCLEDISHSCWDLFCWDPDKELP FT KKFSADFVSCKYNTWTKSVEPTWANVDAEVIKEDFTICDGEYRNTVSTSIRYEAPTVMS FT DCGSMIITNVGGKTKIVGIHVAGRDNKIGMASLLPPLLPCAQAQGAEKYFNFYPIEYDA FT AEGIARVGELKPKLYIPLPKKTSLVKTPEEWHLGTPCDKVPSILVKGDPRLADTVHADY FT DPCLSGLTKYSTPMSPLDSVLLGETCQEILDEWFDCLPEGFELGEVTINEALNGVDGVD FT YMDRIPLATSEGFPHVMSREQGEKGKQRFVQGDGHIVSLIPGTSVHEAYETLSRTIATE FT VPTLVGIECPKDEKLPFRKVFTKPKTRNFTILPMEYNILVRQYFLNFVRFIMKKRDVLP FT CQVGINPYSMEWSIVASRLKSQGNDILCCDYSSFDGLLSKQIMEMMADMINRFCGGGTL FT ICAKRKNLLMACCSRLAISRDSVWRIECGIPSGFPLTVICNSIFNEILVRYHYKLLLQE FT HNAPNMYVQSFKNLISMVTYGDDNLISVNAVVKPYFDGTKLKQAMARNGIIITDGKDKT FT SATLEFRRLEDCDFLKRGFLKRSSVLWDAPEEKASLWAQLHYVNVNNCEMQVAYMTNLV FT NVLRELYMHDPTEMVEFRRLALKSIPWLNTTDLPTLYQVKEFYAEQRLRNIPDHNDSLD FT MLTSVDLLGPAILGEGVPQEALVLSELLEVRDLRYHTVPDNDNGKEVWILFNTMYPQKL FT LPSNCHSFTWNCGQGRGGLPTQHWLATNVTRTDSKLNKLIRTAVAANKKIVLATKDNIL FT PINVIAVLLAARNKVMPSLATNALLTYVIGAAKKLNFLTSECQFAFFNV" XX SQ Sequence 6033 BP; 1779 A; 1098 C; 1396 G; 1760 T; 0 other; tattaaaatt tttatgcaaa attttgataa ccgcaaacgt ggagaaatcc aaaactcact 60 tacaaactct cttttctgct tgagacaatt ttaattgcaa ttttctcatt cttgaataca 120 aacaaatttg tatttgcttg aagtctggaa catcgagcga tccttggtac caatactacc 180 ttggggagtg tttcacactt ttcttttctt ctcctaattt ctctcaattt caatattgtg 240 ttagtgcgca tttacagcat cattaaatca tgtatatgtt aacttttgag ccgggtcttt 300 gtgtggcagg tatcatacgc caagtgcgta gtaatccgtt catgcatgtt gtgcaagcct 360 atgcacgcac aacagaaact taccgtgaag atattgaaat gacaaaatcc atgttgaagc 420 ttaaagctga tgagccttta ctggttatgt caattgttgc agcagctatg gattttcaga 480 caatggttat ggcaccaata gaaatggaag cttctgaatt tctttatggc ttctatgcag 540 aaagaatgtc atacattgtg acaaatagag gtatgtcaga gctccatgag tatattcagt 600 tgcaatgcca aagacatcta cttgtcaagg tggagattga tggacagtac ttagtccagg 660 agcatgagta tgaggcacaa ggatttaaca tcaagagggt taaagaatta atcacagatg 720 ttgcaacttg ggtcccaaag aaagtcaagg gaatgatagg ttggtctgta gacgcagttc 780 tagactcttt tcaggaatac ttttataaag ttattactga aagaattcca atggccatga 840 aggtgtgttc atgggtggcc acagtttggg accaaatcaa gacatggata gaagatgcta 900 tgactgccat gtctagtttt ctccagggtt gtaacgaatt actaacatgg ggtttagcta 960 ctctggcagc atgctgtgct ctaaatgttt tggagcgaat tctaatattc atggaatttt 1020 tagatgagag tattgacata gcaggcattt tccttcggac tggagtggtt gcagcagctt 1080 gttaccattt tagttccacg gcaaaaggat tcacagagat gatgtctgtc ctttcagtcg 1140 caacaacagc cgtagctgct gtagtctgtg caaattactt tggaggtagt aaaaccaaaa 1200 aggtaaatgc gcaaggtaat ccagtagatt tattggaaag aatagcagct ggtctgtcta 1260 gtatatccca agattcattg gtatccctgg gtaagtcctg tagtgctata aactctatag 1320 ctacaagcta tggacatctg cgtaacttcg caggtagagt tttaactatg cttagggatt 1380 ttgcctggaa aattttgggg cttgaaactc gtttccttgc agatgctgct ttagtgttcg 1440 gagaagacgt tgatggttgg ttgcagagaa ttagtgcttt gagagaggcc tatgtttcca 1500 aagcatattc ctcacaggat gaggtatttg agatgaatgt cctgttggaa agaggctata 1560 aaatgagaca tctaatggca acaggctcta gagtttcccc tgcaattggt aacatgctca 1620 tgcagggttt ggcagatctt gagagattgc acaggaatgc tgcagtacag ggcgtgaaag 1680 gtgttaggaa aatacctttt acagtctttg ctcatggtaa ctccagatgt ggaaagtctc 1740 tacttattgg caaactcata agcgatttcc aagaacataa gggccttggt gaggacacgg 1800 tgtactctcg gaacaccact gaaacgcact ggagcggtta tagaagacaa cctatagtgg 1860 tgattgatga ctttgcagca gttgaatctg atatttctgc tgaggcgcaa ctgataaatc 1920 ttgtttctag cacaccctat tcagttgtta tggctgccat agaggagaag ggaatgactt 1980 ttgactctca gttcatattt gcatctacca attttctgga agttagccct aatggaaaga 2040 taagatgtga tgatgctttc agaaatagga gacatgtgct aattgatgtg aagcttaaac 2100 ctgaagtaga gtaccagagt gatgatttca cagcaaatca gagctacaac attttagagc 2160 acagtcatgg aagatacaat gttgtggcaa cttttgataa ctatgaggag ctgttggcat 2220 actgtttgac caaacatgaa caacatgaag ccgagcagga agccaatctt gcaaagctgc 2280 gtaggactaa taaatttgag tcccatttca aaaaatttga acaagtgcta caattgtcca 2340 catatttcag ctcttccata gagagaatca agagggaagc tctggcgacc acagatgggg 2400 cggatgatta tcatttactg tatgtggtac ccagaaatgg ttcctatttg cacgttgcag 2460 ctaataagga ttttcagatc caacagtggt acggacctgt ggaagaagtc gcagaggagg 2520 atattttgag ggcatcagaa aggatgctgc ttggagccta tgagttttta ctactttcca 2580 cagaactcaa tgtggtggtc aaaaatcatc taccagagtt gatatgtact gataattatg 2640 atcacaacct ggaattttgt ggtgttgttg gagaccctgt atatcaccaa caactactca 2700 agaacattag agccctcaaa ccatggcata gagccgtgct ctttggtatt ggcactctta 2760 tgggagccaa aaatccaaca ccatggtata aaaggatgtg ggaaggaatc aaggatgttc 2820 tgtacaaagc ctactctact gaaatatccc aatggcctgt acccttgaaa atcacatgtg 2880 gaattgtgtt ggttggcatt gtcggggcag gattttggaa aacagtttca gttctgacaa 2940 atgcgggcaa tggggcagga ctggtaggag cagcagtgaa ttctttctca gttgtttcta 3000 cagctgaagc acagagcagg aagccaaaca gatttgaagt gcaacagtat aggtacaaga 3060 acgtgcctct tactagaagg tcatggggta atgcccagat gtcactcgac caaagcactg 3120 tgtcaatatt aaacaaatgt catgccaagt ttatcatagc ttcacaacat gctcagatag 3180 tgctagtgcc aggcagaagg tttattggtt actctcactt tttctgcaat cttaaacatc 3240 ctttgatggt acagatagag actgctgata gaacttactt tcacaggtac caacccgaaa 3300 acatggagta tattgaagat tctgagctct gtgtttatca tagttcgtgc ctagaggaca 3360 tctctcatag ctgctgggat cttttctgct gggatcctga caaggaactg ccaaagaaat 3420 tttcagcaga ctttgtttcc tgcaagtaca atacctggac caaaagtgtt gaaccaacat 3480 gggcaaacgt ggatgctgag gtgattaaag aagattttac catttgtgat ggtgaatatc 3540 gcaacacagt gagtacgagc atcaggtacg aagcgccaac ggttatgtca gattgtggtt 3600 ccatgatcat caccaatgtg ggtggaaaaa ccaaaatagt aggcattcat gttgcgggaa 3660 gggacaataa gataggcatg gccagtttgc tgcctccact attgccctgt gcacaggctc 3720 aaggtgcaga aaagtatttt aatttttatc caatagagta tgatgcagct gaaggtatag 3780 ctagggtagg agagttaaaa cccaaacttt acattccctt gccaaagaaa acctcattgg 3840 ttaaaacacc tgaagaatgg cacctaggaa caccctgtga taaagtgcct tcaattctgg 3900 tgaaagggga tcccaggcta gcggacactg tgcatgcaga ttatgaccca tgtctctcgg 3960 gtctcactaa gtattccaca ccaatgtctc cgttagattc agtgctgctt ggggaaactt 4020 gccaagaaat actggatgag tggtttgatt gtttgccaga aggatttgag cttggggagg 4080 tgactattaa tgaggcactt aatggagttg acggtgtgga ttacatggat cgcatacctt 4140 tggctacttc agaaggcttc cctcatgtca tgtcacgaga acaaggtgag aaagggaaac 4200 aaagatttgt gcaaggagat ggacatattg tctctttaat tccaggtact agtgttcatg 4260 aagcatatga aacattgtct cggacaatag caacagaagt gcctaccctt gttggaatag 4320 agtgtcctaa agatgagaag ttgcctttca gaaaggtgtt cacaaagcca aaaactagga 4380 atttcactat tcttcccatg gaatacaaca tcttggttag gcaatatttt cttaattttg 4440 tgcgtttcat catgaagaag agagatgttt tgccttgcca ggtaggtatc aatccttata 4500 gcatggaatg gtccatagtt gcatcgagat tgaagagtca aggcaacgat attctgtgtt 4560 gcgactactc ttcatttgat ggtttgctct ctaaacagat tatggaaatg atggctgata 4620 tgatcaatag attctgtggg ggcggcactc tcatctgtgc aaagagaaag aacttactga 4680 tggcttgttg ttctcgccta gccatctcca gggacagtgt atggaggatt gagtgtggaa 4740 taccatcagg tttccctttg acagtcatct gcaatagcat cttcaatgaa attctggtca 4800 ggtatcacta caaactactg ctgcaagagc ataatgctcc caacatgtat gttcaaagct 4860 ttaaaaacct gattagcatg gtgacctatg gtgatgataa tctgatttct gtgaatgctg 4920 tggtgaagcc ttactttgat ggaacaaagc tcaagcaagc aatggctagg aatggcataa 4980 tcataacaga tggtaaggac aaaacaagtg ccacacttga atttcgacgc ttggaagatt 5040 gtgattttct caaaagaggt tttcttaaga gatcttcagt actctgggac gcacctgagg 5100 agaaagccag tttatgggca caattgcatt atgtaaatgt caacaattgt gaaatgcaag 5160 tggcctatat gacaaattta gtgaatgtgc tgagggaatt gtacatgcat gatcctactg 5220 aaatggtgga gtttcgtaga ttggcattga agtccattcc ttggttgaac accacagatc 5280 taccaacact ataccaggtt aaagagtttt atgcagagca aagattgagg aatatccctg 5340 accacaatga cagtcttgac atgctgacta gtgttgatct actaggacca gcaatcctgg 5400 gggagggggt tccacaagaa gccctagtgc taagtgaact gctagaggtt agagatctga 5460 gatatcacac tgttccagat aatgataatg gcaaggaagt gtggattcta ttcaacacca 5520 tgtatcctca gaagctcttg ccatcaaatt gccacagttt cacttggaat tgcggacagg 5580 gtagaggagg tttaccaaca caacactggt tggctacgaa tgtgacaaga acagattcca 5640 agctcaacaa gttaatcaga acagctgttg cagccaataa gaagattgtg ttagcaacca 5700 aggacaacat attgcctatc aatgtcattg cagttctgct agcagccaga aacaaggtga 5760 tgccttcttt ggctacaaat gcattgttaa cttacgtcat aggtgcagcc aagaaactta 5820 attttttgac ctctgagtgt caattcgctt tctttaatgt ctgatgtaat ttggaaattc 5880 gtgttttctg tgtgtcgtga gttttcgttt gttatttctt ttgggtgttt tcttccaata 5940 gaataaatgg aatttattcc attagtataa tatctttctt tatcttattt taatatagta 6000 ctgttgtggt atgtgataaa gtttgtgttt att 6033 //