ID X61153; SV 1; circular; genomic DNA; STD; VRL; 2773 BP. XX AC X61153; XX DT 20-DEC-1991 (Rel. 30, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 7) XX DE Tomato yellow leaf curl Sardinia virus, complete genome XX KW monopartite genome; single-stranded DNA genome; viral genome. XX OS Tomato yellow leaf curl Sardinia virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2773 RX DOI; 10.1093/nar/19.24.6763. RX PUBMED; 1840676. RA Kheyr-Pour A., Bendahmane M., Matzeit V., Accotto G.P., Crespi S., RA Gronenborn B.; RT "Tomato yellow leaf curl virus from Sardinia is a whitefly-transmitted RT monopartite geminivirus"; RL Nucleic Acids Res. 19(24):6763-6769(1991). XX RN [2] RP 1-9 RX DOI; 10.1073/pnas.92.9.3879. RX PUBMED; 7732000. RA Laufs J., Traut W., Heyraud F., Matzeit V., Rogers S.G., Schell J., RA Gronenborn B.; RT "In vitro cleavage and joining at the viral origin of replication by the RT replication initiator protein of tomato yellow leaf curl virus"; RL Proc. Natl. Acad. Sci. U.S.A. 92(9):3879-3883(1995). XX RN [3] RP 1538-2617 RX DOI; 10.1073/pnas.92.12.5640. RX PUBMED; 7777563. RA Desbiez C., David C., Mettouchi A., Laufs J., Gronenborn B.; RT "Rep protein of tomato yellow leaf curl geminivirus has an ATPase activity RT required for viral DNA replication"; RL Proc. Natl. Acad. Sci. U.S.A. 92(12):5640-5644(1995). XX RN [4] RX DOI; 10.1016/0014-5793(95)01355-5. RX PUBMED; 8543063. RA Laufs J., Schumacher S., Geisler N., Jupin I., Gronenborn B.; RT "Identification of the nicking tyrosine of geminivirus Rep protein"; RL FEBS Lett. 377(2):258-262(1995). XX RN [5] RP 1-2773 RX PUBMED; 9811744. RA Noris E., Vaira A.M., Caciagli P., Masenga V., Gronenborn B., Accotto G.P.; RT "Amino acids in the capsid protein of tomato yellow leaf curl virus that RT are crucial for systemic infection, particle formation, and insect RT transmission"; RL J. Virol. 72(12):10050-10057(1998). XX RN [6] RC Revised by [7] RA Kheyr-Pour A.; RT ; RL Submitted (08-AUG-1991) to the INSDC. RL A. Kheyr-Pour, Inst des Sciences Vegetales CNRS, 91198 Gif-sur Yvette, RL Cedex, FRANCE XX RN [7] RP 1-2773 RA Gronenborn B.; RT ; RL Submitted (02-DEC-1998) to the INSDC. RL B. Gronenborn, Inst des Sciences Vegetales CNRS, 91198 Gif-sur Yvette, RL Cedex, FRANCE XX DR MD5; 4770d6252cf3b4582ce4856e6712b7bd. DR EuropePMC; PMC110531; 9811744. DR EuropePMC; PMC156158; 12767999. DR EuropePMC; PMC1642161; 16943286. DR EuropePMC; PMC2092379; 18052529. DR EuropePMC; PMC2224568; 17977971. DR EuropePMC; PMC2681986; 19321611. DR EuropePMC; PMC6356960; 30634476. DR EuropePMC; PMC6362282; 30718735. XX FH Key Location/Qualifiers FH FT source 1..2773 FT /organism="Tomato yellow leaf curl Sardinia virus" FT /mol_type="genomic DNA" FT /db_xref="taxon:123735" FT regulatory 1..9 FT /standard_name="conserved nonanucleotide" FT /function="target of Rep protein" FT /note="part of replication origin" FT /citation=[2] FT /regulatory_class="other" FT stem_loop join(2761..2773,1..20) FT /standard_name="conserved hairpin loop" FT /function="circularization of ss-DNA during replication" FT /note="part of replication origin" FT /citation=[4] FT /citation=[2] FT rep_origin 8 FT /direction=RIGHT FT /note="first base of viral (+) strand" FT /citation=[2] FT misc_binding 8 FT /bound_moiety="Rep protein" FT /note="during DNA replication covalently bound via a FT 5'phosphotyrosyl ester to tyrosine 103 of Rep protein" FT /citation=[4] FT regulatory 111..116 FT /regulatory_class="TATA_box" FT CDS 147..494 FT /gene="V2" FT /product="V2 protein" FT /note="V1 in citation=[1]" FT /db_xref="GOA:P61511" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/Swiss-Prot:P61511" FT /protein_id="CAA43462.1" FT /translation="MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDL FT ISVIRARDYAEANRRYTNFNARLEGSSKTELRQPVYQPCCCPHCPRHQASIMDLQAHVS FT KAADVQNVQKP" FT CDS 307..1080 FT /gene="V1" FT /product="capsid protein" FT /note="capsid gene; V2 in citation=[1]" FT /db_xref="GOA:P27257" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/Swiss-Prot:P27257" FT /citation=[1] FT /citation=[5] FT /protein_id="CAA43467.1" FT /translation="MPKRTGDILISTPVSKVRRRLNFDSPYTSRAAAPTVQGIKRRSWT FT YRPMYRKPRMYRMYRSPDVPPGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHR FT VGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDNE FT PSTATVKNDLRDRYQVMRKFHATVVGGPSGMKEQCLLKRFFKINTHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT regulatory complement(1052..1057) FT /note="of complementary sense transcription" FT /regulatory_class="polyA_signal_sequence" FT CDS complement(1077..1481) FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:P27266" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/Swiss-Prot:P27266" FT /protein_id="CAA43463.1" FT /translation="MDLRTGEYITAHQATSGVYTFGITNPLYFTITRHNQNPFNNKYNT FT LTFQIRFNHNLRKELGIHKCFLNFHIWTTLQSPTGHFLRVFKYQVCKYLNNLGVISLNN FT VVRAVDYVLFHVFERTIDVTENHEIKFNFY" FT regulatory 1079..1084 FT /note="of virion sense transcription" FT /regulatory_class="polyA_signal_sequence" FT CDS complement(1222..1629) FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:P27263" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/Swiss-Prot:P27263" FT /protein_id="CAA43464.1" FT /translation="MQSSSPSTSHCSQIPIKIQHHIAKKRQVRRRRVDLDCGCSYYIHL FT DCINHGFTHRGVHHCASSNEWRLYLRDNKSPIFHDNQTQSEPIQQQIQHTNIPNQIQPQ FT LEEGTGDSQMFSQLPHLDDLTVSDWSFFKSL" FT CDS complement(1538..2617) FT /gene="C1" FT /product="Rep protein" FT /function="sequence specific endonuclease; nucleotidyl FT transferase; ATPase; origin binding protein" FT /note="Replication initiator." FT /db_xref="GOA:P27260" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="PDB:1L2M" FT /db_xref="PDB:1L5I" FT /db_xref="UniProtKB/Swiss-Prot:P27260" FT /citation=[3] FT /citation=[4] FT /citation=[2] FT /protein_id="CAA43466.1" FT /translation="MPRSGRFSIKAKNYFLTYPKCDLTKENALSQITNLQTPTNKLFIK FT ICRELHENGEPHLHILIQFEGKYNCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDVLEWGTFQIDGRSARGGQQTANDAYAKAINAGSKSQALDVIKELAPRDYVLHFH FT NINSNLDKVFQVPPAPYVSPFLSSSFDQVPDELEHWVSENVMDAAARPWRPVSIVIEGD FT SRTGKTTWARSLGPHNYLCGHLDLSQKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPQSSFKEYLDEEKNQALKNWATKNAIFVTIHQPL FT FADTNQNTTSHRQEEASEA" FT CDS complement(2170..2466) FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/Swiss-Prot:P27272" FT /citation=[1] FT /protein_id="CAA43465.1" FT /translation="MKMGNLISIFSSNSKENTIVPINDSSTWYPQPGQHISIRTFRELN FT RAPTSSPISTRTEMFLNGVLSRSTDDLLGEDNRQPTTLTQRQLTQEVSRRLLM" FT regulatory complement(2683..2688) FT /regulatory_class="TATA_box" XX SQ Sequence 2773 BP; 764 A; 520 C; 608 G; 881 T; 0 other; taatattacc ggatggccgc gctccccgat aaagaagtgg gtcctacgca gtagtttctg 60 tcgaccaatg aaattgcagc ctcaaagctt aaataactgt tcagctgtgt tataaacttg 120 ctccctaagt ttaaaaaata tacaaaatgt gggatccatt attaaatgaa tttcctgatt 180 cagtccatgg tctccgatgc atgctcgcaa ttaaatattt gcagctagtt gaagaaacct 240 acgaacctaa tacccttggt cacgacttaa ttagggatct catctccgtc attcgtgctc 300 gtgactatgc cgaagcgaac cggcgatata ctaatttcaa cgcccgtctc gaaggttcgt 360 cgaagactga acttcgacag cccgtatacc agccgtgctg ctgcccccac tgtccaaggc 420 atcaagcgtc gatcatggac ttacaggccc atgtatcgaa agccgcggat gtacagaatg 480 tacagaagcc ctgatgtacc tccgggttgt gaaggtccct gtaaagtgca gtcgtacgag 540 cagcgtgatg acgtcaagca taccggtgtt gtgcgttgtg ttagtgatgt aactaggggt 600 tctggtatta ctcatagagt tggtaaacgt ttttgtatca agtcaattta tatattagga 660 aagatttgga tggatgaaaa cataaaaaaa caaaatcata ctaaccaagt gatgtttttc 720 cttgttcgag accgaaggcc ttatggaact agtcctatgg attttggtca agtttttaac 780 atgtttgata atgaacccag tactgctacg gtgaagaacg acttacggga taggtatcaa 840 gtaatgagga agtttcatgc tacggttgtt ggaggtccgt cagggatgaa ggagcagtgt 900 ttgctgaaga gattttttaa aattaatacc catgtagttt ataatcacca agagcaggcg 960 aagtatgaaa atcatactga gaatgccttg ttattgtata tggcttgtac tcatgcttct 1020 aacccagtgt acgctacgtt gaaaatacgt atttattttt atgatgctgt aacaaattaa 1080 taaaaattaa attttatttc atgattttca gttacatcaa ttgttctttc aaatacatga 1140 aacaatacat aatcaactgc tctaacaaca ttatttaaag aaattacacc caaattattc 1200 aaatatttac agacttgata tttaaagact cttaaaaaat gaccagtcgg agactgtaag 1260 gtcgtccaga tgtggaagtt gagaaaacat ttgtgaatcc ccagttcctt cctcaagttg 1320 tggttgaatc tgatttggaa tgttagtgtg ttgtatttgt tgttgaatgg gttctgattg 1380 tgtctggtta tcgtgaaata taggggattt gttatcccga aggtataaac gccactcgtt 1440 gcttgatgcg cagtgatgta ctcccctgtg cgtaaatcca tgatttatgc agtctaagtg 1500 tatgtaataa gagcagccac agtccagatc tacccttcta cgcctcactt gcctcttctt 1560 ggcgatgtga tgttgtattt tgattggtat ctgcgaacaa tggctggtgg atggtgacga 1620 agattgcatt cttagtagcc cagtttttta atgcttgatt tttttcttcg tcgagatatt 1680 ctttaaatga tgattgtggg cctggattgc ataggaagat agtgggaatg cctcctttaa 1740 tttgaatggg cttgccatac tttgtgttgc tttgccaatc tctttgggcc cccataaatt 1800 ctttaaagtg ttttaaataa tgcgggtcga cgtcatcaat gacgttatac caagcattat 1860 tgctgtatac tttttgactg aggtcaagat ggccgcacaa ataattatgt gggcctaatg 1920 aacgggccca cgttgtcttt cctgtccggc tgtcaccctc aatcactata ctcaccggtc 1980 tccaaggccg cgcagcggca tccatgacgt tctcggaaac ccagtgttca agttcatcag 2040 gaacttgatc gaaagaagaa gataaaaaag gagaaacata aggtgccgga ggcacctgga 2100 aaaccttatc taaattacta tttatattat gaaaatgtag aacgtaatct ctaggcgcta 2160 attctttaat tacatcaaga gcctgcgact tacttcctgc gttaattgcc tttgcgtaag 2220 cgtcgttggc tgtctgttgt cctcccctag cagatcgtcc gtcgatctgg aaagtacccc 2280 attcaagaac atctccgtcc ttgtcgatat aggacttgac gtcggagctc gatttagctc 2340 cctgaatgtt cggatggaaa tgtgctgacc tggttgggga taccaggtcg aagaatcgtt 2400 gattggtaca attgtatttt ccttcgaatt ggatgagaat atggagatga ggttccccat 2460 tttcatgtag ttctctgcaa attttgatga ataatttgtt tgtgggtgtt tgtaggtttg 2520 ttatttggga aagtgcattt tcttttgtta aatcacattt gggatatgta aggaaataat 2580 ttttagcctt gatactaaaa cgacctgatc ttggcatttt tgctgtcgtt ctgaatcggg 2640 ggacactcaa agtatccagc aattggggga attggggggc aatatatatg atgcccccta 2700 aatggcatag atgtaattat tcaaagtaat aaatttattt tttaattttt ttttggtaaa 2760 gcggccatcc gta 2773 //