ID X57924; SV 1; linear; genomic DNA; STD; VRL; 8002 BP. XX AC X57924; XX DT 04-JUN-1991 (Rel. 28, Created) DT 04-JUN-1991 (Rel. 28, Last updated, Version 1) XX DE Rice tungro bacilliform virus (infectious clone) ORF's P24, P12, P194 & P46 XX KW pararetrovirus. XX OS Rice tungro bacilliform virus OC Viruses; Ortervirales; Caulimoviridae; Tungrovirus. XX RN [1] RP 1-8002 RA Hull R.; RT ; RL Submitted (20-FEB-1991) to the INSDC. RL R. Hull, John Innes Institute, Colney Lane, Norwich, NR4 7UH, UK XX RN [2] RP 1-8002 RX DOI; 10.1093/nar/19.10.2615. RX PUBMED; 2041739. RA Hay J.M., Jones M.C., Blakebrough M., Dasgupta I., Davies J.W., Hull R.; RT "An analysis of the sequence of an infectious clone of rice tungro RT bacilliform virus, a plant pararetrovirus"; RL Nucleic Acids Res. 19(10):2615-2621(1991). XX DR MD5; 87cfaac631a48d7b145e4ba6cefb2add. DR EuropePMC; PMC4188196; 25674613. DR EuropePMC; PMC4974523; 27399761. DR EuropePMC; PMC5537673; 28696406. XX FH Key Location/Qualifiers FH FT source 1..8002 FT /organism="Rice tungro bacilliform virus" FT /isolate="Philippines" FT /mol_type="genomic DNA" FT /clone="pJIIS2, pJIIB4" FT /db_xref="taxon:10654" FT misc_feature 1..16 FT /note="minus-strand DNA primer" FT CDS 69..668 FT /gene="ORF P24" FT /note="no ATG" FT /db_xref="UniProtKB/Swiss-Prot:P27500" FT /protein_id="CAA40995.1" FT /translation="VPKRDLISQNIESRYEKLEFLDLAVWGKEKKQKYLLSTDNISFYC FT YFDTSKTSESERKHTFHSDNKQLNSIVDLIIKHSEKTKNIKEELEKYSQFLDKILDLKP FT TKKQVEKLLENQNLISKNFDYIKEQNTQLEKSLRKTVKLEDSINTLLVEIQQARPKEVE FT LRTLKIAEQNSKAIEKFEQEIKDLREILEFLKHQAT" FT CDS 665..997 FT /gene="ORF P12" FT /db_xref="InterPro:IPR009417" FT /db_xref="UniProtKB/Swiss-Prot:P27499" FT /protein_id="CAA40996.1" FT /translation="MSADYPTFKEALEKFKNLESDTAGKDKFNWVFTLENIKSAADVNL FT ASKGLVQLYALQEIDKKINNLTTQVSKLPTTSGSSSAGAIVPAGSNTQGQYKAPPKKGI FT KRKYPA" FT CDS 994..6021 FT /gene="ORF P194" FT /db_xref="GOA:P27502" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR028919" FT /db_xref="InterPro:IPR034728" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/Swiss-Prot:P27502" FT /protein_id="CAA40997.1" FT /translation="MSLRPFTGTSRTITQDSTSESNIKKGKNSTKRELIEEVDVNQEVE FT NFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEEAISVTHNAYTTTLFPQEVIKN FT VKNQGKLYYHIGMMAIGVKGLHRRKIGTKVMIMFYDDSFGKAREASIGSIEMDMNAGCG FT VFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSVAIKTIGRLTTNIQSKYKINVKD FT IVEQISSQGIIMVAPMEIDSSHLDGNEWDLSKFLNHENTSRVPTKALIYQNLQGGESLR FT FSNYKQTRMHDPTENNSDEDEDLKILGEQLNIKMARFYTMQTPEEELREVIQQLEREKQ FT AMIAKLEAKMKESSKMAIVEDNFNPNNEYLEDTYSEYEDLEFEKLGLTGWEDLDQDSIE FT TEEITEWENPNQVLHREIRAYKSVSEQIEDIFGELLKEHGNYDMALKNLEEKYDLDKIE FT KAKSIEEIAKSSTSSEIRPTKRPKEEQTAYEDDMRDDWKRKELTVNPIEASKDRNFERI FT GSSYKKNFYPSRSEILNLDNVPPQFYYDQLVTWEGIVKNEWEARKKDGMDMWSWMDGRI FT TGLVLYLVQDWISKNQAAYNDIKSRGDRPENFVKMVKDRFLIEDPTDERRTALQRLAQR FT ELEALNCEDPTKIQPFMAEYLKKASEAKKGFDVVYVERLFDRLPEAVGKVVKADFVKDG FT NSYEAGIGIAVSYISTWMRAKCIKETEAKTQKKASLAFCRSIYTIGDYKKRKILKRVTN FT YNKNRRKNYVRRPSIKKKCRCYICQDENHLANRCPRRYTNQARASLIDGLDEDIVSIAS FT DDEDIENFLEIIELDEFIAHSSQEHEHTWEIGGKKDKVCEICSYFTDYNKTVSCKTCET FT QYCKTCSDQLALEVTEVKKPTKEETMIDDLKLNVKNLEFRVTILEHKVEMQNLQDKFET FT MQIRNKSEITEIPTTSLAMRANESNYIKTSINKTAGCYVETKISFNNENRIITALIDSG FT STHNIICPTLIPASWINNTHREIIMFAVDNSKYNLNQELIDDIKLQFQEVDETFGIKYK FT LGQTYVAPKPTKTFIIGHRFLTNENGSVTIHKDYITIQKTTGIYPTARHELKSEFARKH FT GGRPPLFSNIPETYNKIPHLHSYQPQPILGYKNEIGNQSLITMVKELEALGFIGDDITK FT NRTTWVCDFKIINPDINITCATIPYTPADKEVFEKQIKELLDNKLIKKADPTCRHRTAA FT FIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGF FT HHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDLKFALLYIDDI FT LIASNNEKEHIEHLKIFFNRVKEVGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIV FT DKIKKFDKNKLNTLKGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKNGQRIFNKEDWN FT IIFKIEREVSKIKPLERPKETDYIIIETDASEEGWGAVLVCKPDKYSGKDTEKIAGYAS FT GNFGEKKTWTSLDYEIEAINEALNKFQIYLDKDFTIRTDCEAIVKGIKTEDYKKRSKTR FT WIKLRDNLLKDGYKPTFEHIKGNKNFLPNFLSREGDFILKCLQNPDSTESYSIDSSESI FT PLYIDSKESHSIESDDSIPLYRDKLLPLVERLKEKSA" FT misc_feature 5685..5698 FT /note="plus-strand DNA primer" FT CDS 6042..7211 FT /gene="ORF P46" FT /db_xref="InterPro:IPR009347" FT /db_xref="UniProtKB/Swiss-Prot:P27501" FT /protein_id="CAA40998.1" FT /translation="MNIEYPYSIHIIDKNKVPIYDQGNLFHTEKSSRLSHVSRGLLDHL FT FTFSSDNTERVRKLHILADYLYLLESERESYKNEWISLKDQVSLLQKQNSELRARIATN FT KEIIEGLREPVKKPIYTTQDKERLRVFFCEERSMEYIYYHIKRLAQQSYYSHLNNLQKD FT CEPFRGVYMSFLTNVKFLVLCEAGYWTVPDIETNTTESILSLSQKKGEDLLQKGVVIFN FT ELEGGYQLSPRFIGDLYAHGFIKQINFTTKVPEGLPPIIAEKLQDYKFPGSNTVLIERE FT IPRWNFNEMKRETQMRTNLYIFKNYRCFYGYSPLRPYEPITPEEFGFDYYSWENMVDED FT EGEVVYISKYTKIIKVTKEHAWAWPEHDGDTMSCTTSIEDEWIHRMDNA" FT regulatory 7373..7379 FT /regulatory_class="TATA_box" FT regulatory 7610..7616 FT /regulatory_class="polyA_signal_sequence" XX SQ Sequence 8002 BP; 3262 A; 1245 C; 1452 G; 2043 T; 0 other; tggtatcaga gcgatgttcg aactttaagg gaaaaataga atacaatcta gtcaaactaa 60 ttacataagt tccaaagagg gatcttattt ctcaaaatat tgagtcacgt tacgaaaaac 120 ttgaattctt agacttagca gtctggggaa aagagaaaaa acaaaaatat ttactatcta 180 ccgataatat tagcttttat tgttactttg atactagtaa aactagtgaa tcagaaagaa 240 agcatacctt tcattctgat aataagcaac tcaatagtat tgtagacctt attattaagc 300 attctgaaaa aaccaaaaat attaaggaag aattagaaaa atatagtcag ttcctagata 360 agatattaga tttaaaacct actaaaaaac aagttgaaaa actattagaa aatcaaaact 420 taattagcaa gaactttgat tatatcaaag aacaaaacac tcaactagaa aaatccctaa 480 gaaaaacagt taagttagaa gactccatta atactctatt agtagaaata caacaagcta 540 gacctaagga agtagaatta agaactctta aaatagcaga acagaactct aaggcaatag 600 aaaaatttga gcaagaaatt aaggacttaa gagaaatcct ggaattcctt aagcatcaag 660 ctacatgagc gctgattacc caactttcaa ggaagccctt gaaaagttta aaaacctaga 720 atcagataca gccggaaaag ataagtttaa ttgggtattt actctagaaa atataaagtc 780 agccgcggac gtaaatttag catctaaggg tttagtacaa ctttacgctt tacaagaaat 840 tgataaaaag attaataatc ttacaaccca agttagtaag ttacctacaa ctagtggaag 900 tagttcagca ggagctatag tacctgcagg tagtaacacc caaggtcagt acaaagcacc 960 acctaagaaa ggaattaaaa gaaaatatcc agcatgagcc ttagaccatt tactggtact 1020 tctagaacta taacccaaga ttcaacctct gaatctaata taaaaaaggg aaaaaactca 1080 acaaaaagag aattaataga agaagtagat gttaatcaag aagtagaaaa ctttgattgg 1140 aaaaaactat caggaattaa acctaataaa ctatatgaga aaaattggca agaaaaagtt 1200 aagttaaaac aacaatctat agtttcagca tataaagaag aagctattag tgtaactcat 1260 aatgcatata ctactacttt atttccacaa gaagtaatta aaaatgttaa gaatcaggga 1320 aaactttatt atcatatagg catgatggcc ataggagtta aaggacttca tagaagaaaa 1380 ataggaacta aagtcatgat aatgttttat gatgatagtt tcggcaaagc tagagaagct 1440 agcattggat caatagaaat ggatatgaac gccggttgtg gagtattcta ctcctgcccc 1500 gactttgcaa aatatattaa agatttatca caccttaaga tagggataca aaccctagga 1560 tatgaaaatt atgaaggaaa aaatctttcg gtagcaatca aaactatagg aagattgacc 1620 accaatatac agtcaaaata taagataaat gtaaaagata ttgtagaaca gatatcatca 1680 caaggaatca ttatggtagc acccatggaa atagattcat cacacctaga tgggaatgaa 1740 tgggatctta gtaaattctt aaaccatgaa aacacaagta gagtcccaac caaagcctta 1800 atatatcaaa atctacaagg aggagaatcc ttaagatttt caaattataa gcaaactaga 1860 atgcatgatc caactgaaaa taattcagat gaagatgaag atttaaaaat cttaggagaa 1920 caactaaata ttaaaatggc aagattttac acaatgcaaa ccccagaaga agaattacga 1980 gaagtaattc aacaattaga aagagaaaaa caagccatga tagcaaaact agaagctaaa 2040 atgaaagagt catccaaaat ggcaatagta gaagataatt tcaatccaaa taacgaatat 2100 ctagaagata catattctga atatgaagat ctagaattcg agaaattagg attaactgga 2160 tgggaagact tagatcagga ttccatagaa accgaagaaa taactgaatg ggaaaatcct 2220 aatcaagtac ttcatagaga aattagagca tataaatcag tatccgaaca aatagaagat 2280 atattcggag aactactaaa ggaacacgga aactatgata tggccctcaa aaacctagaa 2340 gaaaaatacg acctagataa aatagaaaag gccaaatcta tagaagaaat agctaagtca 2400 tctacatcgt cagaaattag gccaactaaa cgacctaaag aagaacaaac agcctatgaa 2460 gatgatatga gagatgattg gaaaagaaaa gaattaacag taaatcccat agaagcctca 2520 aaagatagaa attttgaaag aataggaagt tcatataaga aaaactttta ccctagtaga 2580 agtgagatat taaacttaga taacgttccc ccacaatttt actatgacca gctagtaacc 2640 tgggaaggaa tagttaaaaa tgaatgggaa gcacgtaaga aagatgggat ggatatgtgg 2700 tcttggatgg atggtagaat aacaggatta gtgttatatt tagtccaaga ttggatatct 2760 aaaaatcagg cagcttacaa tgatataaaa tctagaggtg atagacctga aaacttcgta 2820 aaaatggtaa aagataggtt cttaatagaa gatcctacag atgaaagaag aacagcacta 2880 caaaggttag cacaaagaga attagaagcc ttaaactgcg aagatcctac taaaattcaa 2940 ccatttatgg ctgaatatct taagaaagcc tcagaagcca aaaaaggatt tgatgtagtt 3000 tatgtagaaa gactctttga tagactacca gaagcagtag gaaaggtagt aaaagcggac 3060 tttgttaaag acggtaattc ctatgaagca ggaataggaa tagcagtttc atatatatcc 3120 acatggatga gagcaaaatg cattaaggaa acagaagcta aaactcaaaa gaaagcatcc 3180 ttagcattct gtagatccat atatactata ggagattata agaaacgaaa aatcctaaaa 3240 agagttacaa actataacaa aaataggaga aaaaactatg tcagaagacc aagtattaag 3300 aaaaaatgta gatgttatat ctgtcaagat gaaaatcacc tggctaatag atgtcctaga 3360 agatatacta atcaggctag agcaagtcta atagatggat tagacgaaga tatagtatct 3420 atagcatcag atgacgagga tattgaaaat ttccttgaaa taatagaact tgatgaattt 3480 atagcacatt ctagtcaaga acatgaacat acatgggaaa tcggaggaaa gaaagataag 3540 gtatgtgaaa tttgcagtta ttttacggat tataataaaa ctgttagttg taaaacttgt 3600 gaaacccaat actgcaaaac atgttctgat caactagcac tagaagtgac agaagtcaaa 3660 aaacctacaa aagaagaaac aatgatagac gacctaaaat taaatgttaa aaatctagaa 3720 tttagagtca ccattctaga acataaggta gaaatgcaga atcttcaaga taaattcgaa 3780 actatgcaaa ttagaaataa atcagaaata acagaaatac caacaacctc attagctatg 3840 agagcaaatg aatcaaacta cataaaaaca tcaattaata aaactgcagg ttgttatgta 3900 gaaacaaaaa tctcattcaa caatgaaaat agaatcataa cagctctaat agattcgggt 3960 tcaacacata atataatatg tccaacattg ataccagcat catggattaa taatacacat 4020 agagaaatta taatgtttgc tgtagacaat agcaaatata atctgaatca agagctaata 4080 gatgatataa aattacaatt ccaagaagtt gacgaaactt ttggaataaa atataaatta 4140 ggacaaacct atgtagcacc taagccaaca aaaacattta taataggaca cagattcctt 4200 acaaatgaaa atggtagtgt tacaatccat aaagattata taactataca aaaaactacg 4260 ggaatatacc caacagccag acatgaactt aaatcagagt ttgcgcgaaa gcatggtgga 4320 cgcccgccat tattttcaaa cattcctgaa acctataaca aaattcctca tttgcattca 4380 tatcagcctc aaccaatatt aggatataag aatgaaatag gaaatcaaag tttaatcact 4440 atggtgaaag aattagaagc acttggattc ataggagatg acattactaa aaatagaaca 4500 acgtgggtat gtgacttcaa aatcataaac ccagatatta atataacttg tgcaacaatt 4560 ccatacacac cagcagataa agaagtattt gaaaaacaaa ttaaggagct actagataat 4620 aagttaatca agaaagctga tccaacatgc aggcatagaa cagcagcatt tatagtaaga 4680 aaccattctg aagaagtagc tcagaaacct cgaatagtct ataactataa acgtttaaat 4740 gataatatgc atacagatcc ttttaatatt cctcataaga tttcaatgat taatctaata 4800 cagaaagcta atatattttc taagtttgat ttaaaagcag gatttcatca tatgaaatta 4860 aaagatgatt tcaaagattg gactactttt acatgctcag aaggattata tacttggaac 4920 gtctgtccat ttggtatagc taacgctcct tgtgcatttc aaagatttat gcaggaatcc 4980 tttggagatt taaagtttgc attattatat atagatgata tacttattgc atctaataac 5040 gaaaaagagc atatagaaca tcttaagatt ttctttaata gagtaaaaga agtaggatgt 5100 gttcttagta agaaaaaatc aaaaatgttt cttaaagaag tagaatatct tggagtagaa 5160 attaaagaag gaaagattag tcttcagccg catatagttg ataagatcaa aaaatttgat 5220 aaaaataaac tcaacaccct aaagggacta caagcatatc tagggttact caattatgcc 5280 agaggataca tcaaagacct atcaaagcta gtaggaccac tttataaaaa gacaggaaaa 5340 aatgggcaaa gaatctttaa caaagaagat tggaatatca tctttaagat agaaagagag 5400 gtatcaaaga taaagccttt agaaagacct aaagaaaccg actacatcat tatagagaca 5460 gatgcgtcag aagaaggctg gggagcagtc ttagtctgta agccagataa atatagtggc 5520 aaggacactg agaaaatagc aggatatgca tcaggaaact ttggagagaa gaaaacctgg 5580 actagtttag attatgaaat agaagctata aatgaagccc taaacaagtt ccagatatac 5640 ttagacaaag attttacaat tagaactgat tgtgaagcaa tagtgaaggg gataaaaaca 5700 gaagactata aaaagagatc aaagaccaga tggatcaagt taagagataa tctcttaaag 5760 gatggataca agcctacctt tgagcatatc aagggaaaca aaaacttttt accaaacttc 5820 ttatcccgtg agggagattt tattttaaaa tgtcttcaaa accccgattc tacggaatca 5880 tattctatag attcgtcaga atcaattcca ctatatatcg attcgaaaga atcacattct 5940 atagagtctg atgactcaat tccactatac agggacaagc ttcttcctct agtcgaaagg 6000 ctaaaggaaa agagtgccta actaagatcg gaggcatcac catgaatata gagtacccgt 6060 actcaatcca cataatagac aagaacaagg ttccgatcta cgatcaagga aatctcttcc 6120 acactgagaa gtcctcaaga ctttcacatg tgtccagagg tttgctggat catctcttta 6180 ctttttcgtc tgataatact gagcgagtta ggaagctcca catattagcc gattatcttt 6240 acctattaga aagtgagaga gagtcatata aaaatgagtg gattagcttg aaggatcaag 6300 ttagtcttct acaaaaacaa aatagtgagt tgagagctag gatagccacc aacaaagaaa 6360 taatagaggg actgagagag ccagttaaaa agccaatata cacaacccag gataaagaga 6420 ggctccgtgt tttcttttgc gaagaaagaa gcatggaata tatatattat catataaaaa 6480 ggctagctca gcagagctat tattcccacc taaataattt acagaaggat tgtgaaccct 6540 ttagaggggt ctacatgtct ttcttaacta atgttaaatt cctagtatta tgtgaagctg 6600 gatactggac tgtaccagat atagaaacta atactacaga gtctatatta agtctatccc 6660 agaagaaagg agaagatctt ctacaaaagg gagtagtaat atttaatgag cttgaaggag 6720 gatatcagct ttctccaagg tttattggag acctttatgc tcatggtttt attaaacaaa 6780 taaacttcac gaccaaggtt cctgaaggat tgccgccaat catagcggaa aaacttcaag 6840 actacaagtt ccctggatca aacaccgtct taatagaacg agaaattcct cgctggaact 6900 ttaatgaaat gaagagagag acacagatga ggaccaactt atatatcttc aagaattatc 6960 gctgtttcta tggttattca ccattaaggc catacgaacc tataactcct gaagaatttg 7020 ggtttgatta ctacagttgg gaaaatatgg ttgatgaaga cgaaggagaa gttgtataca 7080 tctccaagta tactaagatt atcaaagtca ctaaagagca tgcatgggct tggccagaac 7140 atgatggaga cacaatgtcc tgcaccacat caatagaaga tgaatggatc catcgtatgg 7200 acaatgctta aagaagcttt atcaaaagca actttaagta cgaatcaata aagaaggacc 7260 agaagatata aagcgggaac atcttcacat gctaccacat ggctagcatc tttactttag 7320 catctctatt attgtaagag tgtgtaatga ccagtgtgcc cctggactcc agtatataag 7380 gagcaccaga gtagtgtaat agatcatcga tcaagcaagc gagagctcaa acttctaaga 7440 gagcaagaga ggagcttatc ctctcaaccc ctcttcaaga agcaaaggcg atcaatggct 7500 caggtcagtg agtagtcgtc tttaaggttc ctctaggaac ctctgtgtaa tatgtttgta 7560 cttatgattg tatttctcaa aacctatccg ctgcatgaat aaagctctta tatttatcct 7620 acacccttgt gataaaacat gaagtcatac tcgttctaag attaagtgtt ctaaaaatac 7680 ttcgaagcat tgaaaagggg gctaaagggg gaaaaagtac cgtcaggccg tgttatggca 7740 agggaagaag taccatgaat accctataga tgttagaagg aagataagaa ctaagtatct 7800 tatgaacaat gggtagctga tttctgatta tcattaacaa gtatcgttat aatccataag 7860 ctttgaaaga tctgctagtg tggataccaa aaggctgtcg tggttcgccc agtcgacgga 7920 tgaggtcata aacgaagcac tagtaggtaa ctaagaggct tagggatgaa gcaacgagaa 7980 aagttagggg ggtgcctaga aa 8002 //