Dbfetch
ID X52938; SV 1; linear; genomic DNA; STD; VRL; 7489 BP. XX AC X52938; XX DT 05-OCT-1990 (Rel. 25, Created) DT 12-SEP-1993 (Rel. 36, Last updated, Version 5) XX DE Commelina yellow mottle virus complete circular genome XX KW complete genome; protease; reverse transcriptase; ribonuclease H. XX OS Commelina yellow mottle virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RC (revised by [4]) RA Olszewski N.E.; RT ; RL Submitted (02-MAY-1990) to the INSDC. RL Olszewski N.E., University of Minnesota, Dept of Plant Biology, 220 RL Biological Sciences Center, 1445 Gortner Ave., St. Paul, MN 55108, USA. XX RN [2] RP 1-7489 RX DOI; 10.1093/nar/18.18.5505. RX PUBMED; 1699203. RA Medberry S.L., Lockhart Olszewski N.E.; RT "Properties of Commelina yellow mottle virus's complete DNA sequence, RT genomic discontinuities and transcript suggest that it is a RT pararetrovirus"; RL Nucleic Acids Res. 18(18):5505-5513(1990). XX RN [3] RP 1-7489 RA Olszewski N.E.; RT ; RL Submitted (29-NOV-1990) to the INSDC. RL Olszewski N.E., University of Minnesota, Dept of Plant Biology, 220 RL Biological Sciences Center, 1445 Gortner Ave., St. Paul, MN 55108, USA. XX RN [4] RP 1-7489 RA Olszewski N.; RT ; RL Submitted (07-DEC-1990) to the INSDC. XX DR MD5; 1f43095745cc2dbe860cf15f832e8003. XX CC [3] The extra c at position 2672 permits readthrough to result in CC one CC ORF (216 kD protein) rather than two (47 kD ORF and 163 kD ORF). XX FH Key Location/Qualifiers FH FT source 1..7489 FT /organism="Commelina yellow mottle virus" FT /mol_type="genomic DNA" FT /clone="pCoYMV89 (and pCoYMV89)" FT /db_xref="taxon:10653" FT tRNA 1..23 FT /note="put. tRNA-Met (put. primer for minus strand FT synthesis )" FT old_sequence 300..302 FT /note="gac was cga" FT /citation=[1] FT CDS 496..1098 FT /note="ORF 1" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/Swiss-Prot:P19200" FT /protein_id="CAA37108.1" FT /translation="MNVWLLKSHTPLGLLPYYSLLDPFCFMNQVDQVKQKLIDWLSSAK FT KLSEEVIVFTPEVKINLRDLAHNIHIIAHRVALGFKVIYLYLVDIIFPLLKNIQKSQKE FT SSENLQSVLKIVKEQRRSLKQIEDQLSKVQSELAKLREDYLSRRPLSKQDVEELVVRIS FT EQPKFIEKQTEALTEELKLKVEEVAKLIHSFKGMVLN" FT variation 541 FT /note="t in clone pCoYMV100" FT variation 873 FT /note="t in clone pCoYMV100" FT CDS 1098..1505 FT /note="ORF 2" FT /db_xref="UniProtKB/Swiss-Prot:P19201" FT /protein_id="CAA37109.1" FT /translation="MSNITESKGYKEALSVTNNYLAPAIGIGGATDVGLTGVTKQLNTT FT IYLVAKITQQIEDLQSTIKRLEERVQSLEKAKTPVVTQDPNPEIISKLSDIQISLARQR FT AVNPAISGVSNYTAPTIKKVDRILRVFKKFN" FT variation 1338..1340 FT /note="3bp deletion in pCoYMV100" FT CDS 1506..7166 FT /note="ORF 3, 216 kD protein" FT /db_xref="GOA:P19199" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR001995" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041577" FT /db_xref="UniProtKB/Swiss-Prot:P19199" FT /protein_id="CAA37110.1" FT /translation="MATRRLPAVTQTDGSRTATESGVPEYEDQIRSYRNDQRRRHIWAG FT RGRRLLSIMPGVSSSERTLEMQMNPEVQLQRSMNHRAEAVPAEVLYRTFHGSVNHRVYS FT HRSEERMMVVNGSQVDRSFIQESSFEVLSRTGIEFIHIGVMLVRIQILHRKFAGTMALI FT VFRDTRWSDDRAVLAAMEIDLSEGNQIVYVLPDIMMTIKSFYRHIQICVMTKGYDGWQG FT EDNLLITRGLTGRLSNTSNVGFAYDVKAMVEHLQSNGVKAIKGEKWDAKRFHNGQWNIE FT PSKVVVPMQPTEMKAVSNYDGTTSLRFSNYAAASTSKPPQYNEKDEEINEDEQEINHSL FT NLILNDEESTDEDEEYYQYQRYAWSQVGDSTFYYDTDGVWEEIDRCNDLPEYVPSETST FT PTIDESEAIIDEFLEHAYEQRCDSDESLQSGDPRKYEYPTPQSSPEHLDNESRSRSSSA FT SSTSMQDDVEEIVRLMKEMRMKKQKKKKAQQALSSQAQEEPIIEENIEENKQAQEEPTQ FT EEIPTHKENQPEEIQNEEIHVFEEEPAFKHLAAQLSELVNMAESSGQSGVGFQPPVNAQ FT PDVNMEGPAGYAPATSQATWSNGVNIPVKSANFRWKGPVGNFQLPSAQGKDGAMLVFGM FT NYSPEVFDRWASITRNYISSFNFNDGGDKIAWMEDLLGETERKIFVSWRMRFKDEYQNL FT AKIANQDGGTQAILSQIRRIFLGEDPVLGQNTVQNIAFRKLKQLVCPNYQSIRRYLMDY FT LTLAAETGLMWSETEGPAISEELFTKMPAAIGERVAQAYKIMDPTSAVNLPSRVYFTIN FT YLTEQCKEASYMRSLKALDFCRDFPIEGYYGRSGEKKKYTARKATKYTGKAHDNHIRVT FT KAKYQRKCKCYICGQEGHYANQCRNKHKDQQRVAILQSLDLKENEEVVSADDKEEEDDE FT IFSVLGEEDYQEETIMVLEEDDIQQIIKEFSKFGDLSRRNVGPNFPGPAEVQMGVLKPK FT SSWRRPIQATLEEINCHHNWTAISTGQLACRSCKQFLAGVQCHHCHAVYCFMCAEAYHD FT VQAEKILSKDYSFSARGKKGKAVIIEEDEIEGEFLISQLQQENQRLQKQVERLQEELMK FT LHREKDEALKHSEKASRVFSTIQESDEAELNLIKEELRQFKEETRMAIAQLKEAIIVQE FT EDTIEERCAMILEEKHTENIYSATAKAEYNGLYNVKVGIKPDNMEPYYINAIVDTGATA FT CLIQISAIPENYYEDAKVTVNFRSVLGIGTSTQMIKAGRILIGEQYFRMPVTYVMNMGL FT SPGIQMIIGCSFIRSLEGGLRIEKDIITFYKLVTSIETSRTTQVANSIEELELSEDEYL FT NIAASVETPSFLDQEFARKNKDLLKEMKEMKYIGENPMEFWKNNKIKCKLNIINPDIKI FT MGRPIKHVTPGDEEAMTRQINLLLQMKVIRPSESKHRSTAFIVRSGTEIDPITGKEKKG FT KERMVFNYKLLNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEESVPW FT TAFLAGNKLYEWLVMPFGLKNAPAIFQRKMDNVFKGTEKFIAVYIDDILVFSETAEQHS FT QHLYTMLQLCKENGLILSPTKMKIGTPEIDFLGASLGCTKIKLQPHIISKICDFSDEKL FT ATPEGMRSWLGILSYARNYIQDIGKLVQPLRQKMAPTGDKRMNPETWKMVRQIKEKVKN FT LPDLQLPPKDSFIIIETDGCMTGWGAVCKWKMSKHDPRSTERICAYASGSFNPIKSTID FT AEIQAAIHGLDKFKIYYLDKKELIIRSDCEAIIKFYNKTNENKPSRVRWLTFSDFLTGL FT GITVTFEHIDGKHNGLADALSRMINFIVEKNDESPYRFTSSVEDALKVCNDDHGRNLIS FT AVINDIITVLRR" FT variation 1970 FT /note="a in clone pCoYMV100" FT variation 2452 FT /note="t in clone pCoYMV100" FT old_sequence 2672..2674 FT /note="ccc was cc in [1]" FT /citation=[1] FT variation 2977 FT /note="c in clone pCoYMV100" FT variation 4611 FT /note="a in clone pCoYMV100" FT variation 4794 FT /note="t in clone pCoYMV100" FT variation 6302 FT /note="t in clone pCoYMV100" FT variation 6434 FT /note="c in clone pCoYMV100" FT variation 7378 FT /note="c in clone pCoYMV100" FT variation 7462 FT /note="additional t in pCoYMV100" FT variation 7478 FT /note="c in clone pCoYMV100" FT variation 7482 FT /note="g in clone pCoYMV100" XX SQ Sequence 7489 BP; 2662 A; 1389 C; 1577 G; 1861 T; 0 other; tggtatcaga gcttggtttg gttatcagaa tgatgagtga gtagtctctc actaggggga 60 gatgtagacg cctacatctc taaggtatgg aaaaactttt gtgtggttat ctttcaataa 120 gtcgaattac tcaggtttta gtcaggattt atggagctat tattattcat attaagtagc 180 agaactgtga agtaggaaag ttctctgaac tgtacagatg ctaataaaaa tgttttgtta 240 gtataaagcc cttaaactgc aaaagtacgt aagccataag acgccaagag agcgcagagg 300 actaagttga gcagaaagat gggtataaaa gctgacaaac ataataaaag gcagaagtct 360 gttttgagta agggaatact tcatggttaa ggctatattt atgaatatat gtataactct 420 gtattatcag gattaaaaga gtagtaagta agacgtacca tggataacca gttactgaaa 480 gcaatttcat actaaatgaa tgtatggttg ttgaagtctc atacccccct aggtctttta 540 ccatattatt cactcctaga tcctttctgt tttatgaacc aagtagatca agtaaaacaa 600 aaattaatag attggttatc ttctgctaag aaattatcag aagaagttat tgtatttacc 660 ccagaagtta agatcaacct tcgtgactta gctcacaata tccatattat agcacatagg 720 gtagccttag gatttaaggt tatctattta tatcttgttg atattatttt tcctttattg 780 aaaaatatcc aaaaatccca aaaagaatca tcagaaaatt tacagtctgt tctcaagatt 840 gtaaaggaac aaagaaggtc cttgaagcag atcgaggatc agctatccaa agtccaatct 900 gagctcgcaa agcttagaga agactattta tccagaagac ctctgtctaa gcaagacgtg 960 gaggagcttg ttgttcggat ctctgaacaa cccaagttca ttgaaaaaca gacagaagct 1020 ttgacagaag agttgaagct aaaggtcgaa gaagttgcta aattaattca ttccttcaaa 1080 gggatggtat taaattaatg agcaacatca ctgaatcaaa aggttacaaa gaagctctct 1140 cagtaaccaa caattatctt gctccagcaa tcggtatagg aggcgctaca gacgttggcc 1200 tcactggtgt gaccaagcaa ttaaacacca caatctatct ggtagcaaag attacacagc 1260 agattgaaga cttacagtca acaatcaaaa ggcttgaaga aagagttcag agcctcgaaa 1320 aggctaaaac tccagtagta actcaggatc caaatcctga gattatctca aagttatctg 1380 acattcaaat cagcttagca agacaaaggg cagttaaccc tgctatatca ggagtcagta 1440 actacacagc gcctactatc aaaaaggtgg acagaatact tcgcgtattc aaaaagttca 1500 actaaatggc gacaagaaga ttgccagcag tcacacagac tgatggatca agaacggcaa 1560 cagaatctgg tgttccagaa tatgaagatc aaatccggtc ttatcggaat gatcaaagaa 1620 gacggcatat ctgggcgggt cgtggacgcc gcttactatc aattatgcca ggagtgagtt 1680 cttctgaaag aactctagag atgcagatga accctgaggt tcaattacaa cgaagcatga 1740 atcacagagc tgaagcagtg ccagctgagg tactgtaccg cacatttcat gggtcggtaa 1800 atcatagagt ctactctcac cgatctgaag aaaggatgat ggtcgtcaac ggttctcaag 1860 ttgatagatc atttattcaa gaatctagct tcgaagtcct gtccagaaca ggaattgaat 1920 ttattcatat tggagtcatg ttagtaagga ttcaaatcct tcacagaaag ttcgcaggaa 1980 caatggctct gattgtgttc agagacacaa ggtggtccga tgatcgggca gttctggccg 2040 ccatggaaat tgatttgtcc gaaggcaacc aaattgtgta tgtcctacct gacattatga 2100 tgacaattaa gtcattctac aggcatatac aaatctgcgt catgactaaa ggttatgatg 2160 gatggcaagg agaggacaat ctccttatca ctagaggctt aaccggaaga ctttcaaata 2220 cttccaatgt cggtttcgcc tatgatgtta aagcaatggt ggagcactta cagtctaatg 2280 gtgtaaaagc cattaaagga gaaaaatggg atgctaaaag attccacaat gggcagtgga 2340 atattgagcc atcaaaggtt gtagttccta tgcaacctac tgaaatgaaa gcagtatcaa 2400 actatgacgg aaccacttct ttaaggttct ccaattatgc tgctgcatcc acatcaaagc 2460 caccacagta caacgagaag gatgaagaga tcaatgaaga tgaacaagaa attaatcact 2520 ctctaaatct catcctcaat gatgaagaat ctactgacga agatgaagag tactaccaat 2580 accaaaggta tgcgtggtca caagtcgggg attcaacatt ttattatgat acagatggag 2640 tctgggaaga aatagataga tgtaatgatc tcccagaata tgtgccctca gaaacctcaa 2700 caccaacaat tgatgaatca gaggctataa ttgacgaatt ccttgagcat gcctatgaac 2760 agcggtgtga ctcagatgaa tcattacaat ctggagaccc aagaaaatac gagtatccta 2820 ctccacaaag ctctccagaa catctagata atgaatctag atcgagatca tcctcagcat 2880 catccacaag tatgcaagat gatgtggaag aaattgttag attaatgaaa gaaatgagga 2940 tgaagaagca aaagaaaaag aaagctcagc aagctttgag cagtcaggct caggaggagc 3000 caattattga agaaaatatt gaagaaaaca agcaggctca ggaggagcct acacaagaag 3060 aaatccctac acacaaagaa aatcagcctg aagaaattca gaatgaagaa attcatgtat 3120 tcgaagagga gccagcattc aagcatttgg cagcccagtt atctgaactg gttaatatgg 3180 cagaatcctc aggacaatca ggcgtaggat ttcaacctcc agttaacgct caacctgatg 3240 ttaacatgga aggacctgca ggatatgcac ctgcaacatc acaagcaaca tggtccaatg 3300 gggttaatat ccctgttaaa tcagcaaact tcagatggaa gggaccagtt ggcaactttc 3360 agttaccatc cgcacaaggc aaagacggtg caatgttggt atttgggatg aattacagtc 3420 ctgaagtctt cgacagatgg gcatcaataa caagaaatta tatctcaagt ttcaacttca 3480 atgatggagg agacaaaata gcatggatgg aagatctcct tggcgaaact gaaagaaaaa 3540 tctttgtttc atggagaatg aggtttaaag atgaatatca aaacctcgca aagattgcaa 3600 atcaagacgg aggaacgcag gctattctca gccaaatcag aagaatcttc ctaggagaag 3660 atccagttct gggtcaaaat acagtccaga atattgcgtt cagaaaattg aagcaattgg 3720 tatgtccaaa ctatcaaagc ataagaaggt atcttatgga ctacctaacc ctagcggcag 3780 aaacagggtt aatgtggtcg gaaactgaag gaccggccat atctgaagaa ttattcacca 3840 aaatgcctgc agcaatcggt gaaagagttg cccaagcata taaaatcatg gatcctacga 3900 gtgcagtgaa tctgccctca agggtatact ttacaataaa ttatctgacg gaacaatgca 3960 aggaggcaag ttatatgagg tcactgaagg ccttagactt ctgcagagac tttcccatag 4020 aaggctacta tggaaggtca ggagaaaaga agaagtatac agcaagaaaa gccacaaaat 4080 acacgggaaa agctcatgat aatcacatcc gtgttacaaa ggccaaatac caaagaaaat 4140 gcaaatgtta catctgtggc caagaagggc attatgcaaa tcaatgccga aataagcaca 4200 aagatcaaca aagggttgca atcttgcagt ccttagattt gaaggaaaat gaagaagtcg 4260 tctcagcgga cgataaggaa gaagaagatg atgaaatctt ctcagttctt ggtgaagaag 4320 attaccaaga agaaacaatc atggtgctgg aagaagatga catccagcaa atcatcaaag 4380 aattctcaaa atttggcgat ctatctagaa gaaatgttgg ccctaacttt cctggaccag 4440 cagaagttca aatgggagtt cttaaaccaa aatcaagttg gagaaggcct attcaggcta 4500 cattagaaga aatcaattgt catcacaatt ggacagcaat ctccacagga caactagcct 4560 gcagatcttg caagcaattc ttagcaggtg tccaatgtca tcactgccat gcagtctact 4620 gctttatgtg cgccgaggca tatcatgatg tacaagctga gaaaatcctt tccaaggatt 4680 attctttttc cgcccggggt aagaagggga aggcagtaat aattgaagaa gatgagattg 4740 agggagaatt tttaatctct caattacaac aagaaaatca gcgacttcag aagcaagttg 4800 aaaggcttca agaagaactt atgaagttgc acagagaaaa agatgaggca ttaaaacatt 4860 cagaaaaagc ctcaagagtc ttctcaacaa ttcaagaatc agatgaagct gaattaaatc 4920 tgattaaaga agagctacgg caattcaaag aagaaaccag gatggcaata gctcagctga 4980 aagaagcaat tatagttcaa gaagaagaca caattgaaga aagatgtgct atgatactag 5040 aagaaaagca cactgaaaac atatactctg ctactgcaaa ggctgagtat aatggcttat 5100 ataatgtgaa ggttgggata aaacctgaca atatggagcc atactacatc aacgcaatcg 5160 tggatactgg tgccacggct tgtcttattc aaatttctgc aataccagaa aattactatg 5220 aagacgcaaa ggtgacagta aacttcagaa gtgtcctagg aattgggaca tcaactcaaa 5280 tgatcaaggc aggaagaatc cttattggtg agcaatactt ccgtatgcca gttacctatg 5340 tcatgaatat gggtctcagt ccagggatcc aaatgataat cggatgttca ttcataaggt 5400 ccttagaagg aggactcagg attgaaaagg atatcatcac tttctataag ttggtgacat 5460 caatcgagac atccaggaca acacaagtgg ctaactccat tgaagaattg gagctttcag 5520 aagatgaata tctcaacata gccgcttcag tagaaacacc ttcatttctg gatcaagaat 5580 tcgcaagaaa gaacaaggat ctgcttaaag aaatgaaaga gatgaagtat ataggggaga 5640 atccaatgga attctggaag aacaacaaaa ttaagtgcaa gcttaatatc atcaatccag 5700 atatcaaaat catgggaaga ccaattaagc atgtcacacc tggtgacgaa gaagctatga 5760 caagacaaat caatttgctt ctacaaatga aggtcatccg cccctcagaa agcaaacaca 5820 ggtctacagc tttcattgtt agatctggta cagaaattga ccccatcaca gggaaggaga 5880 agaagggcaa agagcgcatg gtgtttaact acaagctctt aaatgagaat actgaatctg 5940 atcagtattc actcccaggg atcaatacaa taatcagcaa ggtgggtaga tccaaaatct 6000 actcaaaatt tgacttaaaa agtggcttct ggcaggtagc catggaagaa gaaagtgtcc 6060 catggacagc attcctagca ggcaacaaac tttatgaatg gcttgtaatg ccatttggtc 6120 tcaaaaatgc gcccgctata tttcaaagga agatggacaa cgtcttcaaa gggacagaaa 6180 agttcatagc tgtttacatt gatgatatac ttgttttctc agaaacagca gaacaacatt 6240 cgcagcacct ctatacaatg ctgcagcttt gcaaggaaaa tgggttaatc cttagcccta 6300 ccaaaatgaa gataggtact ccggagatcg atttcttagg ggcttctctc ggatgtacaa 6360 aaatcaagct tcagccccac atcatttcaa aaatatgtga cttctcagat gaaaaactag 6420 caacacctga aggtatgaga agctggttgg gtatcctctc atatgctaga aattatattc 6480 aggatatcgg caaattggtg caaccactca gacaaaagat ggcaccaaca ggagacaaga 6540 gaatgaatcc agaaacatgg aagatggtaa gacagataaa agaaaaggtg aaaaatctcc 6600 ctgatcttca gttaccacct aaagattcat tcatcataat agagacggat ggttgtatga 6660 ctggctgggg agccgtctgc aaatggaaaa tgtcaaagca tgatccaaga agcaccgaaa 6720 gaatttgtgc ctatgctagt ggatcattca atccaataaa atcaaccatc gatgcagaga 6780 ttcaggcggc aatccatggc ctggataaat tcaaaattta ttatcttgat aaaaaggagc 6840 tcataattcg ctcagactgt gaagcaatta tcaaatttta caacaagacg aacgaaaata 6900 agccgtctag agttagatgg ttaacatttt cagatttctt aacaggtctt ggaatcacag 6960 ttacattcga gcacatagat ggaaagcata atggcttagc agatgctcta tcaagaatga 7020 taaatttcat tgtggagaaa aatgatgaat ctccatacag gttcacttca tcagtagagg 7080 acgcactaaa ggtctgcaat gatgatcacg gaagaaattt gatatccgcc gtcatcaatg 7140 acatcatcac agtactgagg agatgaatac ttagccatga agtagcgtgc gaatattacc 7200 tatgccttta ttcgcagcgt tagtggcact gaaaggcata aagtttgttc gttcttatca 7260 aaaacgaatc ttatctttgt aacttggtta cccggtatgc cggttcccaa gctttatttc 7320 cttatttaag cacttgtgta gtagcttaga aaaccaacac aacaacacca agaatacttt 7380 gagtgtagta attggttcta gttttagtct gaaaaatctc ttcggagaaa gtaagacaag 7440 atccattata tgtaataaaa cttttccgca acctatttcc tgtcttaaa 7489 //