ID X52774; SV 1; linear; genomic RNA; STD; VRL; 3164 BP. XX AC X52774; XX DT 10-MAY-1993 (Rel. 35, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 2) XX DE Barley stripe mosaic virus (BSMV) third genomic component RNA 3 XX KW RNA 4; RNA3 component. XX OS Barley stripe mosaic virus OC Viruses; Riboviria; Virgaviridae; Hordeivirus. XX RN [1] RP 1-3164 RX AGRICOLA; IND90042704. RA Kozlov Yu.V., Afanas'ev B.N., Rupasov V.V., Golova Yu.B., Kulaeva O.I., RA Dolya V.V., Atabekov I.G., Baev A.A.; RT "Primary structure of barley stripe mosaic virus RNA 3 and its RT variability"; RL Mol. Biol. 23:854-863(1990). XX DR MD5; 458c5598dd86e89c3e03777874953694. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01075; TLS-PK1. XX FH Key Location/Qualifiers FH FT source 1..3164 FT /organism="Barley stripe mosaic virus" FT /variety="RNA3 (II)" FT /mol_type="genomic RNA" FT /db_xref="taxon:12327" FT repeat_region 85..447 FT /note="missing in variation RNA3 (III) and RNA4" FT CDS 94..2406 FT /note="ORF 1" FT /db_xref="GOA:Q80873" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:Q80873" FT /protein_id="CAA36983.1" FT /translation="MDVVKKFAVMSVTVVAGPVLTLSSPVVVTFGTSLIAVSLVKRLLQ FT EQPRVIAHDHEHYPGGSESSSSSCATAPILRNLSRDQCDSENIGCSSSACSPSEIVKVT FT RQVVEVERGLYRDIQFGMDVVKKFAVMSVTVVAGPVLTLSSPVVVTFGTSLIAVSLVKR FT LLQEQPRVIAHDHEHYPGGSESSSSSCATAPILRNLSRDQCDSENIGCSSSACSPSEIV FT KVTRQVVEVERGLYRDIFQDNEIPSVMEEKLQKLLYSEGEKIRRRCQFEASTMHSRKVK FT VPEVGTIPDIQTWFDATFLGNSVRFSDFDGYTVATKDINMDVQDCRLKFGKTFRPYEFK FT ESLKPVLRTAMPEKRRGSLIDSVLAFRKRNLAAPRLQGALNEWHTIENVLKKALKVFFF FT EDLIDRTDHCTYESALRWWDKQSVTARAQLVADQRRLCDVDFTTYNFMIKNDVKPKLDL FT TPQVEYAALQTVVYPDKIVNAFFGPIIKVINERIIRALRPHVVFNSRMTADELNETVAF FT LTPHKYRALEIDFSKFDKSKTGLHIKAVIGLYKLFGLDGLLKVLWEKSQYQTYVKDRNF FT GLEAYLLYQQKSGNCDTYGSNTWSAALALLDCLPLEDAHFCVFGGDDSLILFDQGYIIS FT DPCRQLAGTWNLECKVFDFKYPAFCGKFLLCIDGKYQFVPDAAKFITKLGRTDVRDVEV FT LSEIYISINDNYKSYKDFKVLDALDKALVNRYRSPYSAISALVSLCYHMFDFNKFKLLF FT NCEGKFVDKKLRKDFEW" FT repeat_region 448..810 FT /note="missing in variation RNA3 (III) and RNA4" FT misc_feature 2044..2229 FT /note="deletion in variation RNA4" FT CDS 2449..2910 FT /note="ORF 2" FT /db_xref="GOA:Q80874" FT /db_xref="InterPro:IPR007609" FT /db_xref="UniProtKB/Swiss-Prot:Q80874" FT /protein_id="CAA36984.1" FT /translation="MMATFSCVCCGTSTTSTYCGKRCERKHVYSETRNKRLELYKKYLL FT EPQKCALNEIVGHSCGMLCSIAEEACDQLPIVSRFCGQKHADLYDSLLKRSEQELLLEF FT LQKKMQELKLSHIVKMAKLESEVNAIRKSVASSFEDSVGCDDSSSVSKL" XX SQ Sequence 3164 BP; 892 A; 585 C; 743 G; 941 T; 3 other; gnnngttata gcttgagcat taccgtcgtg taattgcaac acttggcttg ccaaataacg 60 ctaaagcgtt cacgaaacaa acaacaattc ggcatggatg ttgtgaagaa attcgccgtc 120 atgtcagtga ctgtagtagc aggtcccgtc cttacgcttt catcacctgt ggtggtgacg 180 tttggaacaa gcttaattgc cgtatctttg gtgaaacggt tgctacagga acaaccccga 240 gtaattgctc acgatcacga acattaccca ggtggttctg agagcagttc tagctcttgt 300 gctaccgcgc ctattttacg taatctttcg cgagatcagt gcgattcaga gaatattgga 360 tgcagttcta gcgcctgttc tccgtctgaa attgtgaaag ttacaaggca ggtagtggaa 420 gttgaacgtg gtctttaccg ggacattcaa ttcggcatgg atgttgtgaa gaaattcgcc 480 gtcatgtcag tgactgtagt agcaggtccc gtccttacgc tttcatcacc tgtggtggtg 540 acgtttggaa caagcttaat tgccgtatct ttggtgaaac ggttgctaca ggaacaaccc 600 cgagtaattg ctcacgatca cgaacattac ccaggtggtt ctgagagcag ttctagctct 660 tgtgctaccg cgcctatttt acgtaatctt tcgcgagatc agtgcgattc agagaatatt 720 ggatgcagtt ctagcgcctg ttctccgtct gaaattgtga aagttacaag gcaggtagtg 780 gaagttgaac gtggtcttta ccgggacatt tttcaggaca acgaaatccc atcagtcatg 840 gaagagaaac tgcagaaact cctttactct gagggtgaga agattcgaag acgttgccaa 900 tttgaagcat caacgatgca ctcacgcaaa gtaaaggttc cggaggtagg tactatccca 960 gatatccaaa cttggttcga tgctacgttt cttggtaact ccgttaggtt ttctgatttc 1020 gacggttata ctgttgctac gaaggacatt aacatggatg ttcaggattg tagacttaag 1080 ttcgggaaga cttttcgacc ttatgaattt aaggaatcac taaaaccagt actgaggaca 1140 gcaatgccag aaaagcgacg gggtagtttg attgatagtg tgctggcctt tcgtaaaaga 1200 aatttggctg cgcccagatt acaaggggct ttgaatgaat ggcacacaat tgagaatgtg 1260 ctgaagaagg cgttaaaggt attcttcttt gaagatttaa ttgatcgaac ggatcattgc 1320 acttacgagt cagcgctcag atggtgggat aaacaatcag tgacggctcg agcgcagctc 1380 gtggcggacc aacggaggtt atgtgatgtt gacttcacga cttataactt catgataaaa 1440 aatgatgtaa aaccgaagtt agatctaaca cctcaagttg aatatgcagc tttgcagact 1500 gttgtgtatc ctgataagat agtcaatgct ttctttggtc cgatcataaa ggtgattaat 1560 gaacggatca tcagagcgct tagacctcat gtggtcttta attctcgtat gactgctgat 1620 gaactgaatg aaacagttgc ctttttgaca cctcacaagt acagagcctt agagattgac 1680 ttttcaaaat ttgataaatc aaagactggg cttcatatca aagctgtcat tggactctat 1740 aagctctttg gtctagatgg cctgttaaaa gtactctggg aaaaatcgca atatcagact 1800 tacgtgaaag atagaaactt cggtctcgag gcatatctat tatatcagca aaagtcagga 1860 aattgtgaca cttacggttc gaacacctgg tctgccgcct tggcgttgtt agattgtctt 1920 cctttggaag atgcacattt ctgtgtattt ggtggtgatg attcattgat attgtttgat 1980 cagggataca taatttccga cccatgccgg caacttgccg gtacttggaa tcttgaatgt 2040 aaagtgttcg acttcaagta ccccgcattt tgtggtaaat ttctgctgtg catagatgga 2100 aaatatcagt ttgttccaga tgcggcaaaa tttatcacaa aattaggtag aactgatgtg 2160 agagatgtag aagttttgag tgagatttat atctctatca atgacaatta caaatcttac 2220 aaagacttta aggtgcttga tgctttggat aaggctttag tgaacagata tcgatcccct 2280 tatagtgcta tttctgcttt ggtttcttta tgttatcata tgtttgactt taataagttt 2340 aagttgctgt ttaattgtga agggaaattt gtggataaga agctgagaaa ggacttcgag 2400 tggtgaactc tgggtcctga tgtttaaatc tactgtattt accttcgcat gatggctact 2460 ttctcttgtg tgtgttgtgg tacctcaact acaagtactt actgtggtaa gagatgtgag 2520 cgaaagcatg tatattctga aacaagaaat aagagattgg aactttacaa gaagtatcta 2580 ttggaaccgc aaaaatgcgc cctgaatgaa atcgttggac acagttgtgg aatgctatgc 2640 tccattgcgg aagaggcttg tgatcaactg ccaatcgtga gtaggttctg tggccaaaag 2700 catgcggatc tgtatgattc acttctgaaa cgttctgaac aggagttact tcttgaattt 2760 ctccagaaga agatgcagga gctgaaactt tctcatatcg taaaaatggc taagcttgaa 2820 agtgaggtta acgcgatacg taagtccgta gcttcttctt tcgaagattc tgttggatgt 2880 gatgattctt cttccgtttc taagttgtaa aaaaaaaaaa aaaaaaaatg tttgatcaga 2940 tcattcaaat ctgatggtgc ccatcaacca tatgatggga gtgtttgcaa gtccactata 3000 atcgaacttg aaaacgatgc ctgaattgga aaccatgaat cttaacggat tctggagaga 3060 aaatttagga ttggtatgaa gctacaactt ccggtagctg cgtcacactt taagagtgtg 3120 catactgatc cgaagctcag cttcggtccc ccaagggaag acca 3164 //