ID X52400; SV 1; linear; genomic RNA; STD; VRL; 3417 BP. XX AC X52400; M36544; XX DT 18-JUN-1990 (Rel. 24, Created) DT 10-FEB-1999 (Rel. 58, Last updated, Version 11) XX DE Nigeria Lassa virus S (small) RNA for glycoprotein precursor (GPC) and DE nucleocapsid protein XX KW N protein; glycoprotein; envelope protein; nucleocapsid protein. XX OS Mammarenavirus lassaense OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Arenaviridae; Mammarenavirus. XX RN [1] RP 1-3417 RA Clegg J.C.S.; RT ; RL Submitted (02-APR-1990) to the INSDC. RL Clegg J.C.S., PHLS Centre for Applied Microbiology and Research, Porton RL Down, Salisbury SP4 OJG, UK. XX RN [2] RP 1-3417 RX DOI; 10.1016/0168-1702(91)90015-N. RX PUBMED; 2042397. RA Clegg J.C.S., Wilson S.M., Oram J.D.; RT ; RL Virus Res. 18:151-164(1990). XX DR MD5; 73c36776cb56127ca3e1b7184481d3e5. DR EuropePMC; PMC105290; 9774554. DR EuropePMC; PMC111699; 10666248. DR EuropePMC; PMC112216; 10888638. DR EuropePMC; PMC1472124; 16698999. DR EuropePMC; PMC1563716; 16840359. DR EuropePMC; PMC1866146; 17267481. DR EuropePMC; PMC1892610; 17143722. DR EuropePMC; PMC3053032; 21056893. DR EuropePMC; PMC3406174; 21175773. DR EuropePMC; PMC3855028; 24340119. DR EuropePMC; PMC516395; 15367645. DR EuropePMC; PMC6322784; 30576397. XX CC See also for overlapping sequence. CC CC Data kindly reviewed (02-JUL-1990) by Clegg J.S.S. CC CC Entry M36544 was deleted, because it was a duplication of x52400. CC M36544 is now a secondary accession number of x52400. XX FH Key Location/Qualifiers FH FT source 1..3417 FT /organism="Mammarenavirus lassaense" FT /strain="GA391" FT /mol_type="genomic RNA" FT /db_xref="taxon:3052310" FT CDS 71..1543 FT /note="glycoprotein precursor (AA 1-490)" FT /db_xref="GOA:P17332" FT /db_xref="InterPro:IPR001535" FT /db_xref="UniProtKB/Swiss-Prot:P17332" FT /func_characterised="identical sequence" FT /protein_id="CAA36645.1" FT /translation="MGQIVTFFQEVPHVIEEVMNIVLIALSILAILKGLYNVATCGLIG FT LVTFLLLSGRSCSLIYKGTYELQTLELNMETLNMTMPLSCTKNNSHHYIRVGNETGLEL FT TLTNTSILNHKFCNLSDAHKRNLYDHSLMSIISTFHLSIPNFNQYEAMSCDFNGGKITV FT QYNLSHSFAVDAAGHCGTLANGVLQTFMRMAWGGSYIALDSGRGNWDCIMTSYQYLIIQ FT NTTWDDHCQFSRPSPIGYLGLLSQRTRDIYISRRLLGTFTWTLSDSEGNETPGGYCLTR FT WMLIEAELKCFGNTAVAKCNEKHDEEFCDMLRLFDFNKQAIRRLKTEAQMSIQLINKAV FT NALINDQLIMKNHLRDIMGIPYCNYSRYWYLNHTSTGKTSLPRCWLISNGSYLNETKFS FT DDIEQQADNMITEMLQKEYIDRQGKTPLGLVDLFVFSTSFYLISIFLHLVKIPTHRHIV FT GKPCPKPHRLNHMGICSCGLYKQPGVPVRWKR" FT misc_feature 1555..1596 FT /note="intergenic hairpin region" FT CDS complement(1603..3315) FT /note="nucleocapsid protein (AA 1-570)" FT /db_xref="GOA:P04935" FT /db_xref="InterPro:IPR000229" FT /db_xref="InterPro:IPR035083" FT /db_xref="InterPro:IPR035084" FT /db_xref="InterPro:IPR038115" FT /db_xref="UniProtKB/Swiss-Prot:P04935" FT /func_characterised="similar sequence" FT /protein_id="CAA36646.1" FT /translation="MSASKEVRSFLWTQSLRRELSGYCSNIKLQVVKDAQALLHGLDFS FT EVSNVQRLMRKQKRDDGDLKRLRDLNQAVNNLVELKSTQQKSVLRVGTLSSDDLLILAA FT DLEKLKSKVTRTERPLSSGVYMGNLSSQQLDQRRALLNMIGMTGVSGGGKGASDGIVRV FT WDVKNAELLNNQFGTMPSLTLACLTKQGQVDLNDAVQALTDLGLIYTAKYPNSSDLDRL FT SQSHPILNMIDTKKSSLNISGYNFSLGAAVKAGACMLDGGNMLETIKVSPQTMDGILKS FT ILKVKKSLGMFVSDTPGERNPYENILYKICLSGDGWPYIASRTSIVGRAWENTVVDLEQ FT DNKPQKIGNGGSNKSLQSAGFAAGLTYSQLMTLKDFKCFNLIPNAKTWMDIEGRPEDPV FT EIALYQPSSGCYVHFFREPTDLKQFKQDAKYSHGIDVTDLFAAQPGLTSAVIEALPRNM FT VITCQGSEDIRKLLESQGRRDIKLIDITLSKADSRKFENAVWDQFKDLCHMHTGVVVEK FT KKRGGKEEITPHCALMDCIMFDAAVSGGLDAKVLRVVLPRDMVFRTSTPKVVL" XX SQ Sequence 3417 BP; 946 A; 799 C; 707 G; 965 T; 0 other; gcaccgggga tcctaggcat ttaggattgc gcattttaaa acctcctttt tggaaagtgt 60 cgcaatcagg atgggacaga ttgtgacatt cttccaagaa gttcctcatg ttattgagga 120 agtgatgaat attgtcctta ttgcactatc catcctagca attctgaagg gactatacaa 180 tgttgccacg tgtggcttga tagggcttgt cacattcctt ctactttcag gaaggtcatg 240 ctcactgatc tacaaaggga cttacgagct gcaaaccctt gagttgaata tggagactct 300 taatatgacc atgccgctat cctgcacaaa gaacaacagt catcattata taagggtggg 360 gaatgagaca ggacttgagc tcaccttgac caacaccagc attcttaatc acaaattctg 420 taacctctct gatgcccaca aaaggaatct ttatgatcac agcctcatga gtatcatctc 480 tacctttcat ctgtccattc ccaacttcaa tcaatatgag gcaatgagct gcgatttcaa 540 tggggggaaa atcactgtgc aatacaacct gagtcatagc ttcgcagtgg atgcagcagg 600 tcactgcggc acacttgcaa atggtgtctt acaaacattt atgagaatgg cttggggagg 660 gagttatatt gctcttgatt ctggacgcgg taactgggac tgtataatga ccagttacca 720 atatctaatc attcagaata caacctggga tgaccactgc caattttcca gaccatcacc 780 tattggctac cttgggcttc tctcacaaag aactagagac atatacatta gcagaaggtt 840 gttggggaca ttcacctgga cactatcaga ctcagaggga aatgaaacac cagggggata 900 ctgccttact agatggatgt tgattgaggc cgaattaaag tgctttggaa acactgcagt 960 agccaagtgc aatgagaaac atgatgaaga attttgtgac atgctaaggt tgttcgattt 1020 caacaaacag gccataagga ggctcaaaac agaggcccaa atgagcatac agctgatcaa 1080 caaggctgtc aatgctttaa taaatgatca gctcatcatg aagaaccact tgagagacat 1140 catgggcata ccatattgta actacagcag atattggtac cttaaccaca catcaacagg 1200 aaagacctca ctaccaaggt gttggcttat ctcaaatgga tcatatctca atgagaccaa 1260 gttttcagat gacatcgaac aacaagctga caacatgata acagagatgc tacaaaagga 1320 atacatagat agacagggca aaactccact ggggttagtt gacctatttg tttttagcac 1380 aagtttctat ctgataagca tctttctcca cctggtcaaa ataccaaccc atagacacat 1440 tgtaggtaaa ccttgcccaa aaccccacag gctgaaccac atgggcatct gctcctgtgg 1500 tctatacaaa cagccaggtg tgcctgtcag atggaagagg tgaaatccca cagggccccc 1560 gtgacccacc gccaattggc ggtgggtcac gggggcgtcc atctacagga cgactttagg 1620 tgttgaagtt ctgaacacca tgtctctagg gagcacaact ctcaggactt ttgcatcaag 1680 tcctcctgaa actgctgcat caaacataat gcaatccatc agtgcacaat gaggagttat 1740 ttcctcttta ccacctctct tctttttctc cacaactacc ccagtgtgca tgtgacatag 1800 atccttgaat tgatcccaaa cagcattctc aaactttctt gaatctgctt tactaagagt 1860 gatgtcaatc agttttatgt ctctcctccc ttgtgactca aggagttttc tgatatcctc 1920 tgatccttgg caagtgatga ccatgttccg aggaagggct tctatcactg cactggttaa 1980 cccaggttgg gcagcaaaca aatcagtcac atcaatacca tgtgaatact ttgcatcttg 2040 tttgaattgc ttcaaatctg ttggctccct aaagaaatgt acatagcaac ccgagctcgg 2100 ttgataaagg gctatctcaa ctgggtcttc tggtcttcct tcaatatcca tccaggtttt 2160 tgcgttggga atcaagttga agcacttgaa atctttgaga gtcatcaact gagagtaagt 2220 taatcctgca gcaaagcctg cagactgtaa tgacttgttg gaccccccat ttccaatttt 2280 ctggggcttg ttgtcttgct caaggtccac cacagtattt tcccatgctc ttcccacaat 2340 cgaggtcctt gatgcaatat agggccatcc gtctcctgag agacagatct tgtataggat 2400 gttctcataa gggttccttt cacccggtgt gtctgataca aacattccca gactcttctt 2460 aactttcaag attgacttca agataccatc catggtctga ggtgaaacct taatagtctc 2520 taacatgtta ccaccatcaa gcatgcaggc ccctgctttg acagcagcac ccaaactgaa 2580 attgtaacca gagatgttga gtgaactttt cttagtgtca atcatattca gaattggatg 2640 actctgagac aatctgtcga gatcagatga gttggggtat ttggctgtgt aaatcagccc 2700 taaatctgtc aaagcttgaa cggcatcatt caggtccact tgcccctgtt tggtcaggca 2760 tgctaaagtt aggcttggca ttgttccgaa ctgattgttg agtaactctg catttttgac 2820 atcccaaact ctcacaatgc catcactggc accctttccc cctccactta ctccagtcat 2880 gccaatcatg ttcaaaaggg ctctcctttg atcaagctgt tgtgaactca aattccccat 2940 ataaactcct gaactcaaag gcctttctgt tctggtgact tttgatttca gtttttctaa 3000 atcagcggcc aggattagta gatcgtctga acttaaggtt ccaactctta agacactttt 3060 ctgctgtgtg gatttgagct caacaagatt gttgactgct tgattgagat ctctcagtcg 3120 ttttaggtcg ccatcatctc ttttctgctt gcgcatcaat ctctgaacat tactgacctc 3180 ggagaagtca agaccatgaa ggagagcttg agcgtcttta actacctgca actttatgtt 3240 ggaacagtag ccagatagtt cccttcttag ggattgagtc cacaagaatg acctcacttc 3300 cttggaagca ctcattgtcg tgatggttgt ctgacccttg agtgggtctt gaatgtggtc 3360 actccaaagg tttgattagt gcaaagcgca atccaatagc ctaggatcca ctgtgcg 3417 //