ID X52387; SV 1; linear; genomic DNA; STD; PLN; 5060 BP. XX AC X52387; X52287; XX DT 26-JUL-1991 (Rel. 28, Created) DT 07-JUL-2002 (Rel. 72, Last updated, Version 15) XX DE Potato DNA for copia-like transposable element XX KW copia-like element; retrotransposon; transposable element; KW unidentified reading frame. XX OS Solanum tuberosum (potato) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum. XX RN [1] RP 1-5060 RA Brisson N.; RT ; RL Submitted (02-APR-1990) to the INSDC. RL Brisson N., Universite de Montreal, Departement de Biochemie, P.O.Box 6128, RL Station A, Montreal, Quebec, H3C 3J7, Canada. XX RN [3] RP 1-5060 RX DOI; 10.1093/nar/18.16.4929. RX PUBMED; 2168544. RA Camirand A., Brisson N.; RT "The complete nucleotide sequence of the Tst1 retrotransposon of potato"; RL Nucleic Acids Res. 18(16):4929-4929(1990). XX RN [4] RX DOI; 10.1007/BF00259448. RX PUBMED; 1703627. RA Camirand A., St-Pierre B., Marineau C., Brisson N.; RT "Occurrence of a copia-like transposable element in one of the introns of RT the potato starch phosphorylase gene"; RL Mol. Gen. Genet. 224(1):33-39(1990). XX DR MD5; 09343228861ad3ed2c650f66d52c6b2f. XX CC This element is in one of the introns of the starch phosphorylase CC gene. See . XX FH Key Location/Qualifiers FH FT source 1..5060 FT /organism="Solanum tuberosum" FT /strain="kennebec" FT /mol_type="genomic DNA" FT /db_xref="taxon:4113" FT mobile_element 1..5060 FT /mobile_element_type="transposon:copia-like transposable FT element" FT repeat_region 1..285 FT /rpt_type=LONG_TERMINAL_REPEAT FT CDS 285..614 FT /note="ORF1" FT /db_xref="InterPro:IPR029472" FT /db_xref="UniProtKB/TrEMBL:Q04355" FT /protein_id="CAA36613.1" FT /translation="MVSERTISPNIIWIKQPFTETIFLKHQQERPAKNLMTQGGNASHM FT PFQLTSHRLNGKNYLEWAQSVKLAIDGRGKLGHLTGETKKPGVGEIREFTRDCLVNKFY FT GTSHR" FT CDS 595..1599 FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:Q04356" FT /protein_id="CAA36614.1" FT /translation="MELVIGKSYLFLPTAKDAWEAVRESYSDLENASQILELKIELWQA FT KQGENEVTTYYNEMVSLWQELDQCYNDEWECSMDSVKAKKKEENERVYLFLARLNREFD FT KVRSRILGKNPLPLRETFSEIRTEETGRKVMLKPDLNVELKPVIDSSALVTVKNEEDKK FT KKPLCDHCKKYWHTRETCWKIHGKPLNWKNKGVDDHGFQSQNGQALQTTYFDQGQQPSP FT ETSLFTREQLEILHKLLQSPQFRANAPKSSNPSCSFAETVSSVSSAFLSVNSNQIDSWI FT IDSRASDHMTGSFRFFSTYTPCAGNSKIKIADGSFSAIAGKGTIKLITISCTS" FT CDS 1532..3559 FT /note="ORF3" FT /db_xref="GOA:Q04358" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR013103" FT /db_xref="InterPro:IPR025724" FT /db_xref="InterPro:IPR036397" FT /db_xref="InterPro:IPR039537" FT /db_xref="UniProtKB/TrEMBL:Q04358" FT /protein_id="CAA36615.1" FT /translation="MVPSLQLLEKELLNLSPSLVLHDTLHVPKLSCNLVSFRKLTRSLN FT CRVIFYSDLCEFQEKVSGKMIGSARESGGLYFLDNGNNSLQLNPIFLNSTFVLNKVMLW FT HYGLGHPSFYYLRHLLPQLFRNKNPSLFQCEFCEMAKHHVDTSFPSQRYQASKPFTMIH FT SDVWGPSRISTMFGKRWFVTFIDDHTRLSWVFLLKGKSEVKNVFETFHVMVETQFNEKI FT KIFRSDNGREFFNEQLGSFFRKTGVVHQSSCPDTPQQNGIAERKNRHLLEATRALMFTS FT KVPQHLWGEALLTATYLINRMPSRPLEFKTPFKVFRESFPSSRLTTDLPLRVFGCTTFV FT HVHNRSKLEPRAKKCIFVGYAPSQKGYKCYDPHARKIIVTMDLTFFESQLYFTTHLQGE FT YHLGEDSFFVILRKLDIKQMRSLILQINTDVRDVGEDINKCDPRDDKDQSDLMIKTQKF FT KPEPVAPSNDKNKNGNREQKTEMQVYSRRNRTQEKRTEDSQHCQKSVPQDLTVIQGTLP FT TDSISNSLDLDLPIAKRKGVRNTSKYPISMFVSYKKLSPSYSAFTSQLSSVEIPTNVQD FT ALQVPEWKEAILEELRALEKNETWELVDLPEGKKPVGCKWVFTTKFKSDGSLERYKAHL FT VVKDHTDISMHDYLETFAPVAKLNSIRVLLTIAVNLDWSL" FT CDS 3569..4741 FT /note="ORF4" FT /db_xref="InterPro:IPR013103" FT /db_xref="InterPro:IPR039537" FT /db_xref="UniProtKB/TrEMBL:Q04357" FT /protein_id="CAA36616.1" FT /translation="MKNVFLNGHLEEEVYMDPPPGFEGKYKSKICRLRRSLYGLKQSPR FT AWFERFTQFVKRQGYVQGQADHTMFTRHSLEGKTTVLIVYVDDIILTGDDVVEIKNLKE FT RLASEFEIKDLGPLKYFLGMEVARSKKGIIVSQRKYVLDLLKETGMSGCRPTETPIDPN FT LKFVKEGKLIDKGQYQRLVGKLIYLSHTRPDISFAVSLVIQFMHYPREEHQEAVYRILR FT YLKSSPGKGLFFKKNEQRSLEAYTDADWAGSSIDRRSTSGYCTFVWGNLVTWRSKKQNV FT VARSSAEAEYRSMALGICEILWLKRFLEELRRPVSFPMKLYCDNKAAISIAHNPVQHDR FT TKHVEVTDTSLKRRLKMEVCAFLLFQQQNKLQIFSQKVFSELLLSPLLAS" FT repeat_region 4778..5060 FT /rpt_type=LONG_TERMINAL_REPEAT XX SQ Sequence 5060 BP; 1625 A; 862 C; 1055 G; 1518 T; 0 other; tgttgaatga gtaggcagat ttagtcataa ctgctccacc attgagctgc cagatttgat 60 tataactgct ccacaaataa agctggcaga tttgattaga atctgctcct gtaaatatgg 120 gattagaata tattattcta ggaaaatagt ttagaggaaa tcctttaatt caaggatttc 180 ctaagaatta gggattgatt agtttatttg gtctttactt gttctcttat aaatactgta 240 caaacacatc gaataaaatt acattttgca gtatctaaac tttcatggta tcagagcgga 300 ccatttcccc taatatcata tggataaaac agcctttcac agagacgatc tttctgaaac 360 atcaacagga acgtcctgca aaaaatctga tgacacaagg aggcaatgct tctcacatgc 420 ccttccagtt aacttctcat cgattaaatg ggaagaacta tctggaatgg gcacagtccg 480 taaagcttgc aatcgatggc cgtggaaagc tgggacatct gaccggagag acaaagaagc 540 cgggagttgg agagatcaga gaattcactc gtgattgctt ggttaataaa ttctatggaa 600 ctagtcatag gtaaatctta tctctttttg cccactgcca aggatgcatg ggaagccgtt 660 agggagtcat attctgattt agaaaatgcc tctcaaattt tggagttaaa aattgaacta 720 tggcaagcta agcagggtga gaatgaagtc actacttatt ataatgaaat ggtgtccttg 780 tggcaggagt tagaccagtg ttacaatgat gaatgggagt gttctatgga tagtgtgaaa 840 gccaaaaaaa aggaagaaaa tgagagagtt tacctttttt tagcaagatt aaaccgagag 900 tttgacaagg tcaggtcgcg aatcctagga aaaaatcctc tgccccttcg tgaaactttt 960 tctgaaatta ggacagagga aactgggagg aaagttatgt taaaacctga tttaaatgtt 1020 gaactaaaac ctgttataga ctcttcagct cttgtaacag tgaagaatga agaggacaaa 1080 aagaaaaagc cattgtgtga tcattgcaaa aaatattggc acacccgtga aacgtgttgg 1140 aagattcatg ggaaaccact aaactggaag aacaagggag ttgatgatca tggctttcaa 1200 tctcaaaatg gtcaggccct ccaaacaact tattttgatc aggggcaaca accttctcca 1260 gaaacgtctc tatttacaag ggaacaattg gaaattctgc acaaactcct tcaatctcca 1320 caatttcgtg caaatgcacc aaaatcttct aatccttctt gttcttttgc tgaaactgta 1380 tcatctgtat cgtctgcttt tcttagtgtc aattccaacc aaatagattc ttggatcata 1440 gattcaagag ctagtgacca catgactggg agtttccgtt ttttctctac ttacactcct 1500 tgtgcaggga acagtaaaat caagatagct gatggttcct tctctgcaat tgctggaaaa 1560 ggaactatta aacttatcac catctcttgt acttcatgat actcttcatg ttccaaagct 1620 ctcttgtaat ctagtttctt tccgtaaatt aacccgttct cttaattgtc gtgttatttt 1680 ttattccgat ttgtgtgaat ttcaggaaaa ggtctcgggg aagatgattg gcagtgctag 1740 agaatcagga ggtctttatt ttcttgacaa cgggaacaac tcactacagc tgaatcctat 1800 ttttttaaac tctacttttg ttttgaataa agtcatgctt tggcactatg ggcttggaca 1860 tccaagtttt tattatttaa gacatttgtt acctcagtta tttagaaata aaaatccatc 1920 cttattccaa tgtgaatttt gtgaaatggc taagcatcat gtagatactt cttttccttc 1980 tcaaagatat caggcttcaa aaccttttac aatgattcat agtgatgttt ggggaccgtc 2040 tagaatttca acaatgtttg gaaaacggtg gtttgtaact tttattgacg atcatactag 2100 attgagttgg gtttttttat tgaagggcaa atctgaggtt aaaaatgtgt ttgagacttt 2160 ccatgtcatg gtggaaacac agttcaatga gaaaatcaag atttttcgga gtgacaatgg 2220 ccgtgaattt tttaatgaac aattaggaag ttttttcaga aaaactgggg tagtacacca 2280 aagctcttgt ccagatacac ctcaacaaaa tggtatcgcc gaaagaaaga atagacatct 2340 tttagaggca acgagagctt taatgtttac tagtaaagtt ccacaacacc tttggggaga 2400 ggctctcttg actgccactt accttattaa tagaatgcca tctcgccctc ttgaatttaa 2460 gacacctttt aaagttttca gagaaagttt tcctagttct aggttaacta cagatctacc 2520 tctgagagtt tttggttgta caacatttgt tcatgttcat aatcgtagta aacttgaacc 2580 gcgggctaag aagtgtattt ttgtagggta tgccccaagt caaaagggat ataagtgtta 2640 tgatccacat gctaggaaga taattgtcac aatggaccta actttctttg agtcgcaact 2700 ctattttact actcatcttc agggggagta tcatttaggt gaagattcat tttttgtgat 2760 attgaggaaa ctagatatca agcaaatgag gagcctaata ttacaaataa atactgatgt 2820 gagagatgta ggggaagata taaataagtg tgatccaaga gatgataagg accaaagtga 2880 cttaatgata aaaactcaga aattcaaacc tgaacctgta gcgccttcaa atgacaaaaa 2940 taaaaatggg aatagagaac aaaaaacaga aatgcaggtg tattcgagaa ggaaccgaac 3000 tcaagaaaaa aggaccgaag attctcaaca ctgccaaaaa tcagtcccac aagaccttac 3060 tgtaattcaa ggtactcttc caactgattc tatttctaat tccttagatc tagatctacc 3120 tattgcgaaa cgcaaaggtg ttagaaatac ttctaaatat cctatttcta tgtttgtgtc 3180 ctacaaaaag ttgtctccta gttattcagc ctttacttca caactctcta gtgtggagat 3240 tccaacaaat gtgcaggatg ctctacaagt tcccgagtgg aaggaggcta ttttggagga 3300 attgcgagct cttgaaaaaa atgagacatg ggagttagtg gatttacccg agggaaagaa 3360 accagtgggt tgtaaatggg tgttcaccac caaattcaaa tcagacggat ccttggaaag 3420 gtataaggcc cacctagtag ttaaggatca cacagacata tcgatgcatg actatctcga 3480 gacgtttgct ccagtagcta agctaaactc aattagagtt ctgttgacaa tcgcagtaaa 3540 tctcgactgg tctctttagc aattggatat gaagaatgtt ttcttgaacg ggcacctaga 3600 ggaagaagtc tatatggatc ccccaccagg ttttgaaggg aagtacaagt caaaaatatg 3660 caggcttaga agatctcttt atggtctaaa acaatctcca agggcttggt tcgaaaggtt 3720 tactcaattt gtgaaaaggc aagggtatgt gcaaggacaa gcagatcaca caatgtttac 3780 tcgacattca ctagaaggaa aaacaaccgt tcttatagtg tatgttgacg atatcatcct 3840 cacaggagat gatgtggttg agataaaaaa tctaaaggaa cgtcttgcct cagaatttga 3900 gataaaggac ttaggcccgc taaagtactt tcttggcatg gaggttgcac gatcgaagaa 3960 aggaattata gtgtcacaaa ggaagtatgt tcttgatctg ttaaaagaaa caggaatgag 4020 tggttgtaga ccaactgaaa ctccaattga tccaaatctg aagtttgtaa aggaaggaaa 4080 attgattgat aagggtcaat atcagagatt ggtaggcaag ttgatttact tgtcacatac 4140 tagacctgat atttcctttg ctgtgagcct agtcattcag ttcatgcatt atccacgaga 4200 agaacaccaa gaagctgtgt atcgaatcct aaggtatcta aagagttcac ctgggaaagg 4260 gttgttcttc aagaagaatg agcaaagaag tcttgaggct tatacggatg cagattgggc 4320 tggttcatct attgatagga ggtctacatc tggatattgt acatttgttt ggggaaattt 4380 ggtgacatgg agaagtaaga agcaaaatgt ggtggctcga agtagtgctg aggctgagta 4440 tcgatccatg gctctcggaa tttgtgaaat attgtggctc aagagatttt tggaagaact 4500 aagaagacct gtgagttttc caatgaagtt gtattgtgac aataaggctg ccataagcat 4560 tgctcataat ccagttcaac atgatagaac aaagcatgtt gaagtgacag acacatcatt 4620 aaaaagaaga ttgaagatgg aagtgtgtgc attccttttg ttccaacaac agaacaagtt 4680 gcaaatattt tcacaaaagg tcttttcaga actacttttg agtcctttgt tagcaagtta 4740 ggcatgtttg ctatttacat gccgacttga gggggagtgt tgaatgagta ggcagattta 4800 gtcattatct gctccaccat tgagctggca gatttgatta taatttgctc cacaaataaa 4860 gctggcagat ttgagaatct gccctgtaaa tatgggatta gaatatatta ttctaggaaa 4920 atagtttaga ggaaatccct taattcaagg atttcctaag aattagggat tgattagttt 4980 atttggtctt tacttgttct cttataaata ctgtacaaac actacgaata aaatatactt 5040 ttgcagtatc taaacattca 5060 //