ID X16636; SV 1; linear; genomic RNA; STD; VRL; 5846 BP. XX AC X16636; XX DT 10-FEB-1990 (Rel. 22, Created) DT 12-SEP-1993 (Rel. 36, Last updated, Version 6) XX DE White clover mosaic virus total genomic mRNA XX KW coat protein; complete genome. XX OS White clover mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RC revised by [3] RP 1-5846 RA Beck D.L.; RT ; RL Submitted (28-SEP-1989) to the INSDC. RL Beck D. L., DSIR Plant Protection, Private Bag, Auckland, New Zealand. XX RN [2] RC revised by [3] RP 1-5846 RX DOI; 10.1016/0042-6822(90)90469-8. RX PUBMED; 2353451. RA Beck D.L., Forster R.L.S., Bevan M.W., Boxen K.A., Lowe S.C.; RT "Infectious transcripts and nucleotide sequence of cloned cDNA of the RT potexvirus white clover mosaic virus"; RL Virology 177(1):152-158(1990). XX RN [3] RP 1-5846 RA Beck D.; RT ; RL Submitted (20-MAR-1990) to the INSDC. RL Beck D. L., DSIR Plant Protection, Private Bag, Auckland, New Zealand. XX DR MD5; d6d124b410586b816ad1f00942d3e2b6. XX CC Data kindly reviewed (20-MAR-1990) by Beck D. CC See for White clover mosaic virus complete RNA genome. XX FH Key Location/Qualifiers FH FT source 1..5846 FT /organism="White clover mosaic virus" FT /strain="O" FT /mol_type="genomic RNA" FT /clone="pWC1MV-4" FT /db_xref="taxon:12188" FT CDS 108..3992 FT /note="ORF 1 (AA 1-1294)" FT /db_xref="GOA:P15402" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:P15402" FT /protein_id="CAA34628.1" FT /translation="MAKVRAALDRITDPSVKAVLNEEAYSHIRPVLRESLTNNPYAIAP FT DAADTLEKYGIATNPFAVKVHSHGAVKSIENTLLERVGFNLPKEPCTFLFLKRSKLRYL FT RRGPSNNDIFINLAIEPRDLQRYEEDTLVESWTRITTRYAYISDTFHFFTRKMLADLFF FT HNPALDVLYATLVLPPEALHKHPSIEPDLYTINYNFNGFQYIPGNHGGGSYSHEFKQLE FT WLKVGHLKSPELCLTFQMIESIGANHLFMITRGIKITPRVRTFTKDSYVLFPQIFHPRN FT LNPSKPFPKVKAMQLFTYVKSVKNPTERDIYAKIRQLIKTSELSDYHPDEIVHIVNYFV FT FISKLDSINSYSDILSLPIWSKALLPIKTKITQLWEKLTGARAFNQLLDALQWKTFTYP FT LEVVDSPQPLQTRDCFIEDERLEIDTLEDEIPPNPNDNTSMSPQSIEEAVKNNPDLPWA FT PWLLILQAHNADCTEKQYDPENNLILPIQEINTLPKHQHPDIPTDLLTLLTKLHREPTT FT VSLDNHRARAYGSDVKNLRIGALLKKQSKDWLASFALKTENIEREVLMSVIHGAGGSGK FT SHAIQTWMRSLNRRDRHVTIILPTTDLRNDWTNKVPNLEQANFKTFEKALCQPCGKIIV FT FDDYSKLPQGYIEAFLAINQNVILAILTGDSKQSFHHESNEDAYTATLEPSIITYQPFC FT RYYLNITHRNKPDLANKLGVYSCSSGTTSFTMSSQALKGMPILSPSIMKKTALGEMGQK FT SMTYAGCQGLTTKAVQILLDTNTPLCSSNVIYTALSRAVDHIHFINTGPNSTDFWEKLD FT STPYLKTFLDCVREEKMNEIIAAEEPPTPVQAPTTHFPKVNPTTVIESYVHDLPEKHDR FT EIFSETHGHSNAIQTDNPVVQLFPHQQAKDETLYWATIEARLQCTSSEENLKEFHLKHD FT IGDILFLNYKQAMNLPQDPIPFNPDLWTLCRQEIENTYLKKSAAALVNAATRQSPDFDS FT HAIALFLKSQWVKKTEKIGCLKIKAGQTIAAFMQQTVMIYGTMARYMRKFRNQYCPRKI FT FVNCETTPADFNSFILDEWNFNRTCFSNDFTAFDQSQDGSILQFEVIKAKFHNIPEDVI FT EGYIQIKTHAKIFLGTLSIMRLSGEGPTFDANTEANIAYTHTKFNIPCDAAQVYAGDDM FT SIDYVASVKPSFNMIEHLMKLKGKPVFNTQTQGDFAEFCGWTISPKGIIKKPEKMNMSI FT ELQKNINKFHEVKRSYALDHAFAYQLGDELHELYNENEAEHHQLATRSLILAGQATALD FT ILDYGLRDLK" FT CDS 3995..4705 FT /note="ORF 2 (AA 1-236)" FT /db_xref="GOA:P15403" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:P15403" FT /protein_id="CAA34629.1" FT /translation="MDHIHHLLSSHGFTRTRLAKSKPIVVHAIAGSGKSTVIRKILSDL FT PNARAYTLGKPDPYSLSNPTIKAFAQFKRGTLDILDEYGQLPFADLDSSFEFIFTDPYQ FT APTDNLFEPHYTLEITYRFGPNTCNLLNQAFQSNITSLVTQDNISFGSPYLVDPVGTIL FT AFQPDTYLILCLHQAPFFKVSEVIGYQWPTVTLYLACKISEIPEEERHLLFIGLTRHTE FT SLLILGPDAFDSSP" FT CDS 4683..5036 FT /note="ORF 3 (AA 1-117)" FT /db_xref="GOA:P15404" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/Swiss-Prot:P15404" FT /protein_id="CAA34630.1" FT /translation="MPLIPPPNPQKTYQIAVLALGLVLLLAFVLISDHSPKVGDHLHNL FT PFGGEYKDGTKTIKYFQRPNQHSLSKTLAKSHNTTIFLIILGLIGTLHGLHYFSNNRRI FT SSSLHCVLCQNKH" FT CDS 4960..5160 FT /note="ORF 4 (AA 1-66)" FT /db_xref="GOA:P15405" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/Swiss-Prot:P15405" FT /protein_id="CAA34631.1" FT /translation="MDFTTLVIIGVYLLVFIVYFAKINTSMCTISISGASVEISGCDNP FT ALFEILPNLKPFDHGLSVPSI" FT CDS 5167..5793 FT /note="coat protein (AA 1-208)" FT /db_xref="GOA:P15406" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/Swiss-Prot:P15406" FT /protein_id="CAA34632.1" FT /translation="MATTTATTPPSLTDIRALKYTSSTVSVASPAEIEAITKTWAETFK FT IPNDVLPLACWDLARAFADVGASSKSELTGDSAALAGVSRKQLAQAIKIHCTIRQFCMY FT FANVVWNIMLDTKTPPASWSKLGYKEESKFAGFDFFDGVNHPAALMPADGLIRGPSEAE FT LLAHQTAKQVALHRDAKRRGTNVVNSVEITNGRSDPIGPLITYPQ" FT old_sequence 5820..5821 FT /note="gtt was gt in [1]" FT /citation=[1] XX SQ Sequence 5846 BP; 1754 A; 1589 C; 971 G; 1532 T; 0 other; gaaaacaaga cgagacgaac ccaaacagaa cgagccatcc gcagaaaaac taaaccatcc 60 caggttttct ttgaacataa ccaatccgta gtttgacaaa ggctgccatg gctaaagttc 120 gtgccgctct tgacagaatc actgatccat cggttaaagc tgtactcaat gaagaggcat 180 acagccacat ccgaccggtt cttcgtgaat ccctaaccaa caacccctac gccatcgcac 240 ccgatgctgc tgatacgcta gaaaagtatg gaattgctac taatccattc gcagtgaaag 300 tacattccca tggagcagtt aaaagtattg aaaacaccct acttgagaga gttgggttta 360 acttgccgaa agagccatgt accttcctct tcctcaaaag aagtaagctg cgttacctca 420 gacgtggacc tagcaacaat gacatcttta tcaatctagc gatcgaaccc cgcgacctcc 480 aaagatacga ggaagacact cttgttgaga gttggacacg tatcaccact aggtatgcat 540 atattagtga cactttccac ttcttcacta ggaagatgtt ggctgacctt ttctttcata 600 atccggcctt agatgtatta tatgccactt tagtacttcc acccgaagcc ctccacaaac 660 atcctagcat agaacctgac ttatacacta ttaactataa ctttaatggt ttccaataca 720 tcccaggcaa tcatggtggt ggttcctact cccatgaatt caaacaactg gagtggctca 780 aagttggaca tctcaaatct ccagaactat gcctcacttt ccagatgatc gaatccattg 840 gtgccaacca ccttttcatg attacccgcg gtattaaaat aacccctagg gtcaggactt 900 tcaccaaaga ctcttacgtg ctctttcccc aaatcttcca ccctcgaaac ctcaatccct 960 caaaaccatt cccgaaagtc aaagcaatgc aactattcac ttatgtgaag tctgtcaaga 1020 atccaactga acgagacatc tatgccaaaa ttcgacagct aatcaagact tctgagctat 1080 ctgattatca tccagatgaa attgtgcaca ttgtaaatta ctttgtgttc atctccaagt 1140 tagatagcat caactcttat tctgacatac tctcgctacc catctggtct aaagcattgc 1200 tacccatcaa aaccaaaatt acacaacttt gggaaaagct caccggcgca agagccttca 1260 atcaactctt agatgcactc caatggaaaa cattcactta tcctttagag gtagttgatt 1320 ctccacagcc ccttcagacc cgagattgct tcattgaaga cgagagatta gagattgaca 1380 cacttgagga tgaaatccca ccaaatccga acgacaacac ttcaatgagt ccacagagca 1440 ttgaggaggc tgttaaaaac aaccctgatt taccctgggc accatggtta ctcatcttgc 1500 aggctcataa tgctgactgc actgaaaagc agtatgaccc tgagaataac ctcattcttc 1560 ctatacaaga gatcaacacc ctccccaagc accaacaccc tgacatccca actgaccttc 1620 taacactcct aaccaaatta cacagagagc caactacagt ctcacttgac aaccatcgag 1680 ctcgtgccta tggttctgac gttaagaatc tgcgaatagg cgctctactc aaaaaacaaa 1740 gcaaagattg gttagctagt ttcgctctca aaacggaaaa tattgaacgt gaagttttga 1800 tgtctgtcat ccatggtgcc ggcggctctg ggaaatcaca tgccattcaa acttggatgc 1860 gctccctgaa ccgaagagac cgtcatgtca caatcatttt accaacgaca gacttgcgga 1920 atgactggac caacaaagtg cccaatctgg agcaagcaaa tttcaaaact tttgagaaag 1980 ctctttgtca accttgtggt aaaattatcg tatttgatga ctactccaag cttcctcaag 2040 gctacatcga agcattcctt gctatcaacc aaaatgtcat tttagccatt cttaccggag 2100 attctaagca gagctttcat catgaatcca atgaggatgc ctacactgcc accctagaac 2160 ccagcattat cacataccaa cccttctgcc gctactacct aaacataacc catagaaaca 2220 aaccagacct agctaacaaa ctgggtgttt actcctgttc tagtggcacc acctccttca 2280 caatgtcatc ccaagctctc aagggtatgc caattctctc ccccagtata atgaagaaaa 2340 ctgctcttgg agaaatgggc caaaaaagca tgacatacgc tggctgccaa ggtctcacaa 2400 ctaaagctgt ccaaattctc ttggatacca ataccccttt gtgcagttcc aacgtcatat 2460 acactgctct cagccgtgct gttgaccaca tacattttat taacactgga cccaactcaa 2520 cagacttctg ggagaaactt gattccacac cctacctcaa aactttcttg gactgtgttc 2580 gagaagaaaa aatgaatgag atcatcgctg ctgaagaacc acctactcct gtgcaggctc 2640 ctaccaccca cttcccaaaa gtgaacccca ccacagtgat tgaatcatat gtccacgatc 2700 ttcccgaaaa acatgatcgt gaaatctttt cagagactca tggtcactca aatgcaattc 2760 aaactgacaa tcctgtggtt caactctttc cccaccaaca agccaaagat gaaactcttt 2820 attgggctac catcgaagct agactacaat gcacttcatc tgaagaaaac cttaaagaat 2880 ttcatctcaa acatgatatt ggtgacattc tcttccttaa ttacaaacaa gccatgaacc 2940 ttcctcaaga ccccatacca tttaacccag acctatggac cctttgcaga caggaaattg 3000 agaacacata cctcaagaaa agtgctgctg cccttgttaa tgctgccacc cgccaatcac 3060 ctgattttga ctcacatgcg atagcactct ttctcaaatc acaatgggtc aagaaaactg 3120 aaaaaattgg ttgccttaaa atcaaagctg gccaaactat tgctgccttc atgcaacaaa 3180 ctgtcatgat ttatggcaca atggctcgat acatgagaaa atttagaaac caatattgcc 3240 ccaggaaaat ctttgtgaac tgtgaaacca caccagccga cttcaactct ttcatcctcg 3300 acgagtggaa ttttaataga acttgctttt caaatgactt cactgcattt gatcaaagtc 3360 aagatggctc catcctccaa ttcgaagtca ttaaagcaaa gtttcacaac atacccgagg 3420 atgttattga aggctatatc caaatcaaaa cacatgccaa gatcttcctg ggcaccctta 3480 gtatcatgag actctctggt gaaggtccca cttttgatgc taacactgaa gcaaacattg 3540 cttatacaca caccaagttt aacataccct gcgatgctgc acaggtgtac gctggtgatg 3600 atatgtccat tgactacgtg gcttcagtca agcccagttt caacatgatt gaacatctga 3660 tgaaactcaa aggtaaacca gtttttaaca cacaaactca gggagacttc gctgaatttt 3720 gcgggtggac aatctcacca aaaggcatta tcaagaaacc agaaaaaatg aacatgagca 3780 ttgaactcca aaagaacatc aacaagtttc atgaagtcaa aagaagttat gctctagacc 3840 atgccttcgc ataccaactt ggtgatgaat tacatgagct atacaatgag aatgaagcag 3900 aacaccacca acttgctaca aggtcactca ttctcgctgg tcaagccacc gccctagaca 3960 tacttgatta cgggttaaga gacctaaagt agcgatggat cacattcacc acctcctcag 4020 ctcccacggt tttacccgca ccagactcgc caaatccaaa cctatcgttg tccatgctat 4080 tgcaggctcc ggtaaatcta ctgtgatcag gaaaattctc tcagacctac ccaacgctag 4140 agcctacaca ttaggtaaac cagaccccta ttctctctcc aaccccacaa ttaaagcttt 4200 cgcccaattc aaaagaggta cactcgacat tttggatgag tacggccaac tcccgttcgc 4260 cgacttagat tcatctttcg agtttatctt cactgaccct taccaagcac caactgacaa 4320 tctctttgaa cctcactaca cactagaaat cacctacaga tttggcccta acacttgtaa 4380 ccttctcaat caagcattcc aatctaacat cacaagcctt gtcacccagg acaacatttc 4440 atttggttca ccctacttag ttgacccagt aggtaccatc ctcgcgtttc aacctgacac 4500 ctaccttatc ctttgcttac atcaagcccc tttcttcaaa gtttcagaag tgattggtta 4560 tcagtggcct actgtaacgt tgtacctagc ctgcaaaatt tctgagattc ctgaagaaga 4620 acgtcacctc ctcttcattg gcctgactag acacacagaa tccctcctta ttttaggtcc 4680 tgatgccttt gattcctccc cctaatcccc agaaaactta ccaaattgcc gtacttgctt 4740 taggattagt gctacttctt gcctttgttc taatttctga tcactctccc aaagtaggtg 4800 atcatctgca caatcttcct tttggaggtg aatacaaaga cggtactaaa actatcaagt 4860 atttccaaag acccaaccaa cattcccttt ccaaaactct tgccaaatct cacaacacca 4920 ccattttcct gatcatctta ggtttaattg gtaccttgca tggacttcac tactttagta 4980 ataataggcg tatatcttct agtcttcatt gtgtactttg ccaaaataaa cactagcatg 5040 tgtactatta gtatatcagg agcttctgtt gaaatctcag gttgcgacaa cccggctctc 5100 ttcgaaatcc tcccaaatct caaacccttt gaccacgggt taagtgtgcc atctatttga 5160 aatccaatgg caaccaccac agcaaccact cctccatcct tgacagacat ccgagcccta 5220 aaatacactt cctccaccgt ctcagtcgcc tcacctgctg aaattgaagc tatcactaaa 5280 acctgggcag aaacattcaa aattccaaat gacgtcttgc ctctcgcttg ttgggatctg 5340 gctcgtgctt tcgctgatgt tggcgcttct tctaagtctg aacttactgg tgactctgct 5400 gctcttgcgg gtgtttcacg gaaacaactg gctcaagcta tcaaaatcca ttgcaccatt 5460 cgccagttct gcatgtactt cgccaatgtt gtgtggaaca tcatgttaga taccaaaaca 5520 ccgccagcat cctggtctaa actcggctat aaagaagaga gcaaattcgc tggctttgac 5580 ttctttgatg gtgtcaatca tcctgctgca ctcatgcctg cagacggcct catccgtggt 5640 ccttccgaag ctgaactctt agcccatcaa accgcaaaac aagtagccct ccatcgcgac 5700 gcaaaacgcc gtggcaccaa cgttgtcaac tctgttgaaa tcactaacgg tcgctccgac 5760 cctattggtc cccttattac ctatccccag taattgcctt atcacttcac ttaatatgtg 5820 tggctttctg tttaataaaa tttcag 5846 //