ID   X15343; SV 1; linear; genomic RNA; STD; VRL; 2613 BP.
XX
AC   X15343;
XX
DT   17-MAY-1991 (Rel. 28, Created)
DT   17-MAY-1991 (Rel. 28, Last updated, Version 2)
XX
DE   Lily symptomless virus RNA 3-terminal region encoding 25kD, 12kD, 7kD, 16kD
DE   proteins and 32kD coat protein
XX
KW   coat protein; unidentified reading frame.
XX
OS   Lily symptomless virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [3]
RP   1-2613
RA   Memelink J.;
RT   ;
RL   Submitted (24-MAY-1989) to the INSDC.
RL   Memelink J., Leiden University, Biochemistry Department Gorlaeus
RL   Laboratories, Einsteinweg 5, 2333   CC Leiden, Netherlands.
XX
RN   [4]
RP   1-2612
RX   PUBMED; 2129538.
RA   Memelink J., Van Der Vlugt C.I.M., Linthorst H.J.M., Derks A.F.L.M.,
RA   Asjes C.J., Bol J.F.;
RT   "Homologies between the genomes of a carlavirus (lily symptomless virus)
RT   and a potexvirus (lily virus X) from lily plants";
RL   J. Gen. Virol. 71:917-924(1990).
XX
DR   MD5; 49227a6147f04fb8861ecbea005812d1.
XX
CC   see X15342 for lily virus X genome;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2613
FT                   /organism="Lily symptomless virus"
FT                   /mol_type="genomic RNA"
FT                   /clone_lib="cDNA in lambda gt11; LSV/TBV"
FT                   /clone="S34"
FT                   /db_xref="taxon:12173"
FT   CDS             1..123
FT                   /note="ORF"
FT                   /db_xref="GOA:P27328"
FT                   /db_xref="UniProtKB/Swiss-Prot:P27328"
FT                   /protein_id="CAA33397.1"
FT                   /translation="ARERMDEEELEAFYNCVRIIVKNKHLLKSDVRNVYEEQLD"
FT   CDS             153..839
FT                   /product="25kD protein"
FT                   /db_xref="GOA:P27330"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="UniProtKB/Swiss-Prot:P27330"
FT                   /protein_id="CAA33398.1"
FT                   /translation="MDVLLSLLSEFGFERLSSELSLPIVVHSVPGGGKSSLIRKLINKD
FT                   RRFSAYTFGLEDCESITGVRIKKAHASIPRSEFVVFDEYIEGDTPPWAFAVFADPLQGG
FT                   PGPVLRAHFIKRRSHRFGKCTAQLLNDLSYEVESDLADVVQIQGLYETDLQGTVVYYEA
FT                   CVGNLLRAHSVPAYYISEIRGQTFESVTFVTSENYPVDRALAFQCLTRHRSSLLILSPN
FT                   ATYTAS"
FT   CDS             817..1137
FT                   /product="12kD protein"
FT                   /db_xref="GOA:P27332"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/Swiss-Prot:P27332"
FT                   /protein_id="CAA33399.1"
FT                   /translation="MPLTPPPDYTRVYTALAIGASIAFFTGLITRNTLPSVGDLQHNLP
FT                   HGGRYRDGTKSVEYCGPRKLNSVESGSRWTFQPWLLVIVLVALIIALGRQGHNCRACGR
FT                   SH"
FT   CDS             1119..1313
FT                   /product="7kD protein"
FT                   /db_xref="GOA:P27333"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/Swiss-Prot:P27333"
FT                   /protein_id="CAA33400.1"
FT                   /translation="MRSVALTLCAIIAGYLLVSNLQNVFSPEVCTLVITGESIRINGCN
FT                   LSPAHFRAISHLKVLQIHL"
FT   CDS             1359..2234
FT                   /product="32kD coat protein"
FT                   /db_xref="GOA:P27335"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/Swiss-Prot:P27335"
FT                   /protein_id="CAA33401.1"
FT                   /translation="MQSRPAQESGSASETPARGRPTPSDAPRDEPTNYNNNAESLLEQR
FT                   LTRLIEKLNAEKHNSNLRNVAFEIGRPSLEPTSAMRRNPANPYGRFSIDELFKMKVGVV
FT                   SNNMATTEQMAKIASDIAGLGVPTEHVASVILQMVIMCACVSSSAFLDPEGSIEFENGA
FT                   VPVDSIAAIMKKHAGLRKVCRLYAPIVWNSMLVRNQPPADWQAMGFQYNTRFAAFDTFD
FT                   YVTNQAAIQPVEGIIRRPTSAEVIAHNAHKQLALDRSNRNERLGSLETEYTGGVQGAEI
FT                   VRNHRYANNG"
FT   CDS             2143..2565
FT                   /product="16kD protein"
FT                   /db_xref="GOA:P27336"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/Swiss-Prot:P27336"
FT                   /protein_id="CAA33402.1"
FT                   /translation="MSVWGAWKPNTPVGYKELKSSEIIDTQIMDEALKRRTTIVLCLLS
FT                   AFPRDICRDILRRTSSHIVGLGRSRYARRRRALQIGRCERCYRVYPPVCGSKCDNKTCR
FT                   PGLSINTNVANYIDHGVTEVIPWISPHRGQFYLRPK"
XX
SQ   Sequence 2613 BP; 675 A; 641 C; 646 G; 651 T; 0 other;
     gcacgtgagc gcatggatga agaagagctt gaagcgtttt acaattgcgt gcgtataatt        60
     gtcaaaaata agcatctgtt gaaatcagac gtgcgtaacg tgtatgagga acaattagat       120
     tagaagctta ggttatagca ttattattgt atatggatgt tttactaagc ttgttgagtg       180
     agtttggttt tgagcgtttg agtagtgaat tgagtctgcc tatcgttgtt catagtgtgc       240
     caggtggtgg gaagtctagt ttaatacgta agttaataaa taaggatcga cgcttctctg       300
     catacacctt tggacttgaa gattgcgaga gcatcactgg tgtccggatt aagaaagctc       360
     acgctagcat cccgcgctca gagtttgttg tgttcgacga atacattgag ggtgacacac       420
     caccgtgggc tttcgcagta tttgctgacc cgctccaagg cgggcctggt ccagtccttc       480
     gtgctcattt tatcaaacga cgctcccaca gattcgggaa gtgcacggcg caactgctca       540
     acgacttgag ctacgaggtt gaatcagatc ttgcggacgt ggttcaaatt caaggcctct       600
     acgagactga tctgcagggc actgttgtgt attacgaagc ttgcgttggc aacctactac       660
     gtgcacactc tgtacctgct tactacatca gtgagattcg aggccaaact ttcgagagcg       720
     tcactttcgt aaccagcgaa aactatccag tggacagagc tttagcattc cagtgtctca       780
     ccaggcaccg ctcatcatta ttgattttga gccccaatgc cacttacacc gcctcctgat       840
     tacacaagag tttacactgc actcgccatt ggtgcttcca tcgcattttt cactggattg       900
     atcacgcgta acacactacc ttccgttggt gatttgcagc acaacttgcc ccacggtggg       960
     aggtaccggg acggcacaaa aagtgtagag tactgcggcc cccgaaaact gaattctgtc      1020
     gagagtggta gccgctggac cttccagcct tggctcttgg tcatcgtgct tgttgcactg      1080
     atcatcgctc ttggtcgaca gggacataac tgtcgggcat gcggtcggtc gcactaacac      1140
     tttgcgccat catcgctggc tatttgctcg tgtctaactt gcaaaacgta ttctcgcccg      1200
     aggtctgcac tttagtcatt actggtgagt ccatccgtat aaacggctgt aaccttagtc      1260
     cagcacattt ccgagcaatc tcacacttga aagtgctaca aattcacctt taggtttaca      1320
     ggcaggcgga cgattagact ctcacttgtt accgcaagat gcaatcaaga ccagcacaag      1380
     aatccggctc tgcaagcgag acccctgcac gtggcaggcc cacacccagt gatgcaccaa      1440
     gagacgagcc caccaattac aataataacg ctgagtcact gttagagcaa cgactaaccc      1500
     ggctgatcga gaagctcaat gctgaaaagc acaattccaa tctgcgaaat gtggctttcg      1560
     agatcgggag gccctcgctg gaacccacga gtgccatgcg aaggaaccct gcgaacccct      1620
     acgggagatt ctcaattgac gaactcttca agatgaaggt tggcgtcgta tctaacaaca      1680
     tggcaaccac tgaacaaatg gccaagatag cgtcagacat cgcagggctt ggggtaccaa      1740
     cggagcacgt cgcatcagta atattgcaaa tggtcatcat gtgcgcttgc gtgagcagtt      1800
     cggcgttcct tgaccctgag ggcagcattg agtttgagaa tggagcggtg cccgtcgact      1860
     ccatcgctgc gatcatgaag aagcacgctg gactgcggaa agtctgccgg ctctatgccc      1920
     ctatcgtgtg gaacagcatg cttgtgcgaa atcaaccacc agctgattgg caagctatgg      1980
     gcttccaata caacacgcgg ttcgcagctt ttgacacctt cgactacgtg actaaccagg      2040
     cggctatcca acctgtcgag gggatcatca ggcgacccac ttctgctgag gtcattgccc      2100
     acaacgcgca caagcaatta gccctggata ggtcaaaccg caatgagcgt ctggggagcc      2160
     tggaaaccga atacaccggt ggggtacaag gagctgaaat cgtccgaaat catcgatacg      2220
     caaataatgg atgaagcatt gaagcgacga actaccatag tgttgtgttt gctttctgca      2280
     tttccgcgtg atatttgccg cgatatattg cggcgcacct ctagtcacat tgttgggctc      2340
     ggaagatcta ggtatgctag acgacgccga gctctccaaa ttggcaggtg tgagaggtgt      2400
     tatcgagtgt atccacctgt ctgtggatct aagtgtgaca ataagacctg caggccaggc      2460
     ctatctataa ataccaacgt ggccaactat atagatcatg gagtaaccga ggtgatacca      2520
     tggatctcac cacatcgtgg ccagttctac ctaagaccta aataatttta agggtaaaac      2580
     tataaaaaaa atttgttttt aaatatttta gca                                   2613
//