ID X15342; SV 1; linear; genomic RNA; STD; VRL; 2343 BP. XX AC X15342; XX DT 17-MAY-1991 (Rel. 28, Created) DT 17-MAY-1991 (Rel. 28, Last updated, Version 2) XX DE Lily virus X RNA 3' terminal region encoding 24kD and 12KD proteins, 22kD DE coat protein XX KW coat protein; unidentified reading frame. XX OS Lily virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [3] RP 1-2343 RA Memelink J.; RT ; RL Submitted (24-MAY-1989) to the INSDC. RL Memelink J., Leiden University, Biochemistry Department Gorlaeus RL Laboratories, Einsteinweg 5, 2333 CC Leiden, Netherlands. XX RN [4] RP 1-2343 RX PUBMED; 2129538. RA Memelink J., Van Der Vlugt C.I.M., Linthorst H.J.M., Derks A.F.L.M., RA Asjes C.J., Bol J.F.; RT "Homologies between the genomes of a carlavirus (lily symptomless virus) RT and a potexvirus (lily virus X) from lily plants"; RL J. Gen. Virol. 71:917-924(1990). XX DR MD5; 77cb50b153b78067d955673e77e46df2. XX CC see X15343 for lily symptomless virus RNA genome; XX FH Key Location/Qualifiers FH FT source 1..2343 FT /organism="Lily virus X" FT /mol_type="genomic RNA" FT /clone_lib="cDNA in lambda gt11;LVX" FT /clone="X39" FT /db_xref="taxon:12194" FT CDS 1..489 FT /note="ORF" FT /db_xref="GOA:P27327" FT /db_xref="UniProtKB/Swiss-Prot:P27327" FT /protein_id="CAA33393.1" FT /translation="AIMRMSGEGPTFDANTECAIAYHHTKYQVEQGTAQLYAGDDMAQD FT TTPILKPSFRLIADRIELKSKEVTHTQVPGEYATFCGWCVTPKGIIKEPRKLFASLQLA FT KHIGKTAEVKTNYAHDLAHAYRLGDELQDVLTPDEAAFHQATVRDLVTMGGVDFQWHP" FT CDS 519..1169 FT /product="24kD protein" FT /db_xref="GOA:P27329" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/Swiss-Prot:P27329" FT /protein_id="CAA33394.1" FT /translation="MEFCGGTLRTRFQRTSVPNSPVTVVHTVAGSGKTTFIRNLLIDHP FT QLVARTYGTPDVPNLLGYGIRDRHGDAHIVDEYPAADLRSHPSVSIVFADPLQHHGEVR FT PAHFTCSHTHRFGKSTCSLLGTLGVYCTSDKEDSVTFAGAYLAEPVGTLIALGEDAELV FT LDNHRVEYFTPCQALGLTFPSVTLLTDAPIEDQPPVSRYIALTRHTDSLLILN" FT CDS 1169..1495 FT /product="12kD protein" FT /db_xref="GOA:P27331" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/Swiss-Prot:P27331" FT /protein_id="CAA33395.1" FT /translation="MPLTPPPDYTKPFIAVVVGGTLAAFVLLLTRNTLPHTGDNLHSLP FT HGGTYCDGTKRIRYGGPHRSHVPELPAKSWALITVVAILIALHFSCLRTHRVHRCVLCH FT TTSG" FT CDS 1630..2235 FT /product="22kD coat protein" FT /db_xref="GOA:P27334" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/Swiss-Prot:P27334" FT /protein_id="CAA33396.1" FT /translation="MTTFVPDAKTWADTAYTAQSESVATAEELQSIATLWEGIGIPAAN FT FFDVAFQLAMRCSDGHASSLTVLSGNCTVAPTVTLKAAAGLVKAVLPLRQFCRYYAKFV FT WNWRLSHDLPPANWADSQFPAEARFAAFDFFDGVTNSAAPQPPDGLIRPPTELELSAAQ FT TAKFAALARVRGSGFVTTAAEITHGRAEVSRTMLLSPP" XX SQ Sequence 2343 BP; 544 A; 720 C; 551 G; 528 T; 0 other; gctataatgc ggatgtcagg cgaaggaccc acctttgacg ccaacacgga atgtgccatc 60 gcttaccacc atacaaaata ccaggtggag cagggcaccg cccaactcta tgcgggcgac 120 gacatggctc aggacacaac accgatcctt aagccatcct ttagacttat cgctgacagg 180 atcgagctga agtctaaaga ggtcacccat acgcaagttc ctggggagta cgccaccttc 240 tgcgggtggt gcgttacacc taagggtatc atcaaagaac ccaggaaact ctttgcctca 300 ctccaactgg ctaagcacat tggcaagact gcagaagtca aaacaaatta cgcccatgac 360 ttggcccatg cataccgcct cggagatgag ctgcaagatg tcctcacccc tgatgaggcc 420 gccttccacc aagctactgt cagagacttg gtgaccatgg gaggcgtcga cttccaatgg 480 cacccctaaa gaaggggtta agttaccgct gattttgaat ggagttttgc ggcggtacac 540 tacgaactcg tttccagcgc accagtgttc ctaattcacc tgtcactgtc gtgcacaccg 600 tagctggaag cggaaaaacc acattcatca ggaacctcct gattgaccat ccacaactag 660 ttgcgcggac ttacggcacc ccagacgtac ctaatcttct aggttacggc atccgcgacc 720 gtcacggtga cgctcacatc gtcgacgagt atcctgctgc agacttgagg tcacacccat 780 ctgtctcaat tgtctttgct gacccactgc agcatcacgg cgaggtcagg cccgcccatt 840 tcacctgctc tcacacgcac aggttcggca agtccacttg ttcgctactc ggcaccctcg 900 gagtttactg cacatctgat aaagaggact ctgtcacttt cgccggggca tatctcgccg 960 agcctgtggg caccttaatt gcgttaggtg aagacgctga gctcgtactc gacaaccaca 1020 gagtcgagta ttttaccccg tgtcaagcgc taggcttaac tttcccgtct gttaccttgt 1080 tgacagacgc acctatcgaa gaccaaccac ccgtctctcg gtacattgcc ttgacacggc 1140 acactgattc actgctgatt ctcaactgat gcctctcacc ccaccaccag actacacaaa 1200 gccttttatt gcagttgtgg ttggaggcac tctagcagct ttcgtactgt tactcacgcg 1260 caacaccctc ccacacacag gagacaattt acacagtctg cctcacggag gaacctattg 1320 cgacggtacg aaacgaatca ggtacggcgg tccacaccgc tcacacgtcc cagaactacc 1380 cgccaagtcc tgggccctca tcaccgtcgt ggctatactc atcgccctac attttagctg 1440 cctacgcact catcgcgttc accgctgtgt gttatgtcac acaaccagcg gctgaaacgt 1500 gctacattga ggtaactggg cacaacgcgg tgataagagg ttgcgtcaac gtgccgcatc 1560 taccagaggt cgtctcagct ttagccccag catcggggtt aagttgccag aaatttcgaa 1620 atcatcacta tgacgacctt tgttcctgac gccaagactt gggctgacac tgcctacaca 1680 gcccagtctg agagtgtagc caccgctgag gagctacaat ccattgccac actgtgggaa 1740 gggattggca tacctgctgc caatttcttc gatgtggcgt tccagctggc catgcgttgt 1800 agcgatgggc atgccagctc actcacagtg ttgtcaggaa actgcactgt ggccccgaca 1860 gtgaccctca aggccgctgc cgggctggtt aaggctgtgc taccattacg acaattttgt 1920 cgttattatg ccaagttcgt ctggaactgg cgccttagcc atgacctgcc gccagccaac 1980 tgggccgact cccaattccc tgcggaagcg cgctttgccg ctttcgattt cttcgatgga 2040 gtcaccaact ctgctgctcc ccaaccgcct gatggcctca tccgaccacc gactgaactt 2100 gagctctccg cggcccaaac tgctaagttt gcggccctag ctcgtgtccg tggttctggt 2160 tttgtcacaa ctgcagctga gattacccat ggccgagcgg aggtgtctag gacaatgcta 2220 ctgtccccac cctagacacc aataaccgcg agcagggact cgtccaggta tagcctggtt 2280 caaccctagc ccaccataca ctaaacttaa tcaactgtgt gggcgaaact cccaagagag 2340 tta 2343 //