Dbfetch
ID X14736; SV 2; linear; genomic RNA; STD; VRL; 4437 BP. XX AC X14736; XX DT 06-JUL-1989 (Rel. 20, Created) DT 03-AUG-2016 (Rel. 129, Last updated, Version 13) XX DE Maize chlorotic mottle virus genomic RNA, isolate KS1 XX KW coat protein; genome; replicase; subgenomic RNA. XX OS Maize chlorotic mottle virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Machlomovirus. XX RN [1] RC Revised by [3] RA Nutter R.C.; RT ; RL Submitted (17-MAR-1989) to the INSDC. RL Nutter R.C., Oklahoma State University, Room 110 Noble Research Centre, RL Stillwater OK 74078-9947, U S A. XX RN [2] RP 1-4437 RX DOI; 10.1093/nar/17.8.3163. RX PUBMED; 2726455. RA Nutter R.C., Scheets K., Panganiban L.C., Lommel S.A.; RT "The complete nucleotide sequence of the maize chlorotic mottle virus RT genome"; RL Nucleic Acids Res. 17(8):3163-3177(1989). XX RN [3] RC revised by [5] RA Scheets K.; RT ; RL Submitted (01-SEP-1999) to the INSDC. RL Scheets K., Microbiology and Molecular Genetics, Oklahoma State University, RL Stillwater OK 74078-3020, U S A. XX RN [4] RX DOI; 10.1006/viro.1999.0107. RX PUBMED; 10648186. RA Scheets K.; RT "Maize chlorotic mottle machlomovirus expresses its coat protein from a RT 1.47-kb subgenomic RNA and makes a 0.34-kb subgenomic RNA"; RL Virology 267(1):90-101(2000). XX RN [5] RP 1-4437 RA Scheets K.; RT ; RL Submitted (26-FEB-2016) to the INSDC. RL Plant Biology, Ecology & Evolution, Oklahoma State University, 301 PS, RL Stillwater, OK 74078, USA. XX RN [6] RP 1-4437 RX DOI; 10.1016/j.virusres.2016.04.024. RX PUBMED; 27242072. RA Scheets K.; RT "Analysis of gene functions in Maize chlorotic mottle virus"; RL Virus Res. 222:71-79(2016). XX DR MD5; 3fe454120b8eb14b196d2bdac90c7fc2. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC1421387; 16524473. DR EuropePMC; PMC3709059; 23825140. DR EuropePMC; PMC5216416; 28059116. DR EuropePMC; PMC5368279; 28400775. DR EuropePMC; PMC5775324; 29352173. DR EuropePMC; PMC5966901; 29792207. XX CC Data kindly reviewed (07-JUN-1989) by Nutter R.C. XX FH Key Location/Qualifiers FH FT source 1..4437 FT /organism="Maize chlorotic mottle virus" FT /isolate="Kansas serotype 1 (KS1)" FT /mol_type="genomic RNA" FT /db_xref="taxon:12138" FT CDS 118..987 FT /codon_start=1 FT /product="p32" FT /note="enhances replication and viral accumulation" FT /db_xref="UniProtKB/Swiss-Prot:P11639" FT /citation=[6] FT /protein_id="CAA32861.1" FT /translation="MPSPCTYGDPTFNSRILEAVVADVLGGTEDDGGPSLEEWFDAQTL FT SDYTNCATDPPMATVHTRENDIKSWTELSENFPDLVRYPESLVETLLDTEHECGHFYDA FT PDSFQISVTAMFTDRCKCQFCDPNFQARSLSRALLGPLPESGDDAEWMEQAYTPDAELF FT VNEPTDDPIPTTDCKRPIQPTWSVDVYSKQVDSDWGLSDSTNVTVCSASSSLLPAGRGG FT IYFMCPRPEGIERVCLQVGAKIRSGAPNSGTITNLPGGTGYGTEWSDDGYETQWSDGPY FT SIPSGLSD" FT CDS 137..3034 FT /codon_start=1 FT /transl_except=(pos:1451..1453,aa:OTHER) FT /product="replicase" FT /note="readthrough of amber stop codon; 111 kDa protein" FT /db_xref="GOA:P11640" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:P11640" FT /citation=[2] FT /protein_id="CAB55589.1" FT /translation="MATLPSIHAFWKLWWPTFSEERKMTVVQALRNGLTRKLFQITQIA FT QQILRWPPYIRERMTSSLGQSLVKTFQTLLGIRKALSRLCLTRNMNVDIFTMLLIPFKF FT LSQLCSQIVASANFVIQTFRHGLSRGLCLARCRNPETMRSGWSKHTLQMQNCSSTSPLM FT TPFQPQIARDLSNPHGLWMSTRNKLTRTGGSAIQQTSRYVRLAVRFSLLAAGAYISCVL FT ARKALKEYVYRWELKSDQELPTREQSQISQVEQAMEQNGAMMVMKLNGPTAPILSLQDC FT LTKHVLVPEIVDEEGTVTQKEQSTFLIREFGPAVRNLVTLAKLEFGGIPKKTTANELTV FT WRFLVRKCEHANMNPTDSRTAISMALPYVFMPCRTDVGRASIPLRDESIEICRQYRAQF FT VEETPLRRVFNNPLSGKAWRNWVRHLGGLDDPALFQELKXGCLEEWLGVQSRRTRARHP FT KLRSHFKDTRHKTRRVFRIAGLGNLYEFGVHNNSAVNLERGLMERVFYVKDDKGELVSC FT PEPISGIFWKNLKGFRNSIVHHVGHRHPVSRETFLAYYTGPKRTMYEKAVNSLYEMPVS FT YDDAKLKTFVKAEKINLTKKADPVPRVIQPRAPRYNVELGRYLRPVEHPIYHAIDKIWG FT GPTIMKGYSVEQIGRHIENAFRSFTDPVAIGFDASRFDQHVSVEALRWEHSVYSRIYGY FT PELLTQLLRWQIHNRGTAYASDGAFNYQVDGKRMSGDMNISLGNCILATAITHDFVTKL FT GIPARLINNGDDNVLICPAVEVGRVRQELYRHWLNYGFEVISEEPVYILEQVEFCQMRP FT VFDGTQYTMMRDPRTTMSKDAYAVTPFNTPTAARRWMRAVGECGLSLTGGLPVKQEYYT FT ALVKHGLDPKNIKQGKDFDSGLYYLSKLSNRKWQEVQESARYSFWLAFGYTPDEQRALE FT EYFKSWTPTFEWSTTGILAEIPECLLLKHNPLPPT" FT CDS 137..1453 FT /codon_start=1 FT /product="replicase-associated protein" FT /note="50 kDa protein" FT /db_xref="GOA:P11640" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:P11640" FT /citation=[6] FT /protein_id="CAA32862.1" FT /translation="MATLPSIHAFWKLWWPTFSEERKMTVVQALRNGLTRKLFQITQIA FT QQILRWPPYIRERMTSSLGQSLVKTFQTLLGIRKALSRLCLTRNMNVDIFTMLLIPFKF FT LSQLCSQIVASANFVIQTFRHGLSRGLCLARCRNPETMRSGWSKHTLQMQNCSSTSPLM FT TPFQPQIARDLSNPHGLWMSTRNKLTRTGGSAIQQTSRYVRLAVRFSLLAAGAYISCVL FT ARKALKEYVYRWELKSDQELPTREQSQISQVEQAMEQNGAMMVMKLNGPTAPILSLQDC FT LTKHVLVPEIVDEEGTVTQKEQSTFLIREFGPAVRNLVTLAKLEFGGIPKKTTANELTV FT WRFLVRKCEHANMNPTDSRTAISMALPYVFMPCRTDVGRASIPLRDESIEICRQYRAQF FT VEETPLRRVFNNPLSGKAWRNWVRHLGGLDDPALFQELK" FT mRNA 2971..4437 FT /product="subgenomic RNA1" FT /note="mRNA for p7a, p7b, p31 and coat protein" FT /citation=[4] FT CDS 2995..3834 FT /codon_start=1 FT /transl_except=(pos:3199..3201,aa:OTHER) FT /product="p31" FT /note="enhances systemic infection" FT /db_xref="UniProtKB/Swiss-Prot:P11641" FT /citation=[6] FT /protein_id="CAB55591.1" FT /translation="MSSSQTQSPPTDVARRQQTGTAVRSEDNHRNQLENIAVGKLTKSE FT GAPAQQNVIIAKEVVINNHFNFNXAGVCVCRFVLASVVKEFNLGDFDLLDSVHLDEDTG FT HRCRLSRAIGVLDRSDTKIPKDRHTQWRQVAGLPEVESSADVAWKQNPELFEPTRLSLD FT PTRSETVPPLREQPAPCPKFCLQCQQQLLTRFSRFQCVQGLTSRLERRPDTLGRPNGWQ FT HNHRCGIQLCSTLCASLGRHSQQTPLADTFPWHSSPITCYQYPLGWRMLPGSCPQLQ" FT CDS 2995..3201 FT /codon_start=1 FT /product="p7a" FT /note="movement protein 1 (MP1)" FT /db_xref="UniProtKB/Swiss-Prot:P11641" FT /citation=[6] FT /protein_id="CAB55590.1" FT /translation="MSSSQTQSPPTDVARRQQTGTAVRSEDNHRNQLENIAVGKLTKSE FT GAPAQQNVIIAKEVVINNHFNFN" FT CDS 3203..3397 FT /codon_start=1 FT /product="p7b" FT /note="CTG start codon; movement protein 2 (MP2)" FT /db_xref="GOA:A0A131KVX9" FT /db_xref="UniProtKB/TrEMBL:A0A131KVX9" FT /citation=[6] FT /protein_id="CZQ76687.1" FT /translation="MECVCVDSSWPQWLRNLILGILISSILFILTKTQDTVAVYHEPSV FT YSIDQTQKFQKIDIHNGGK" FT CDS 3384..4094 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:P11642" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:P11642" FT /protein_id="CAA32864.1" FT /translation="MAASSRSTRGRKQRGRSVEAKSRAIRANPPVPRPNPQRNRPPPAG FT TTCSMSEILLAVSATTADQILEIPVCAGIDFPAGTSPRYIGAAKWLAAQSQMWNTIVFN FT SVRITWETFTADTTSGYISMAFLSDYMLSIPTGVEDVARIVPSATIALKNRGPSIVMPQ FT NRTVFRCIQAGQFAALGSAADKQMYSPGRFIVAIPKASATQAVGQIKISYSVSYRGAAI FT LQPALVPGPGLANH" FT misc_RNA 4101..4437 FT /note="subgenomic RNA2 with unknown function" FT /citation=[4] XX SQ Sequence 4437 BP; 1198 A; 1115 C; 1112 G; 1012 T; 0 other; aggtaatctg cggcaacaga ccccaacgcg ttagacacga ccttacagtt gactcacgtc 60 ttgcatcctg tgagagctct aacgtgggaa tttgcccctg actggcaatc aggtttcatg 120 ccctctccct gcacttatgg cgaccctacc ttcaattcac gcattttgga agctgtggtg 180 gccgacgttc tcggaggaac ggaagatgac ggtggtccaa gccttgagga atggtttgac 240 gcgcaaactc tttcagatta cacaaattgc gcaacagatc ctccgatggc caccgtacat 300 acgcgagaga atgacatcaa gtcttggaca gagcttagtg aaaactttcc agaccttgtt 360 aggtatccgg aaagccttgt cgagactctg cttgacacgg aacatgaatg tggacatttt 420 tacgatgctc ctgattcctt tcaaatttct gtcacagcta tgttcacaga tcgttgcaag 480 tgccaatttt gtgatccaaa ctttcaggca cggtctctct cgcgggctct gcttggcccg 540 ttgccggaat ccggagacga tgcggagtgg atggagcaag catacactcc agatgcagaa 600 ttgttcgtca acgagcccac tgatgacccc attccaacca cagattgcaa gagacctatc 660 caacccacat ggtctgtgga tgtctactcg aaacaagttg actcggactg ggggctcagc 720 gattcaacaa acgtcacggt atgttcggct agcagttcgc ttctccctgc tggccgcggg 780 ggcatatatt tcatgtgtcc tcgcccggaa ggcattgaaa gagtatgtct acaggtggga 840 gctaaaatcc gatcaggagc tcccaactcg ggaacaatca caaatctccc aggtggaaca 900 ggctatggaa cagaatggag cgatgatggt tatgaaactc aatggtccga cggcccctat 960 tctatccctt caggactgtc tgactaaaca cgttctggtt ccagagattg tggacgaaga 1020 aggcacagta acacaaaaag aacagtccac ttttctcatc cgtgagtttg gtcctgccgt 1080 cagaaaccta gtgaccctcg caaagctaga attcggcgga attccaaaga aaactacagc 1140 caatgaactt acggtttggc ggttcctagt acggaagtgt gaacatgcaa atatgaaccc 1200 aactgactcc cgtactgcca tttcaatggc cctgccatac gtgtttatgc cgtgtcgcac 1260 tgatgttgga agagcttcaa ttccactgcg tgatgaatcc attgaaatct gtcgccaata 1320 tcgcgcacaa tttgtggagg agacacccct acggcgagta ttcaacaacc cattgagcgg 1380 aaaagcatgg cgtaactggg ttaggcacct gggtgggctg gatgatccag ccctattcca 1440 ggagttgaaa taggggtgtc ttgaagagtg gcttggggtg cagtctcggc gcacacgtgc 1500 gcggcacccc aaactccgta gccactttaa agacacgaga cacaaaaccc gcagagtgtt 1560 ccggattgca ggtttgggca acctgtatga atttggagtc cacaacaact ctgcggtaaa 1620 cctggaacgt ggactaatgg agcgagtatt ttatgtgaaa gatgataagg gggaactcgt 1680 ttcatgccct gagcctatta gtgggatatt ttggaaaaac ttgaagggat tcagaaatag 1740 cattgtacac catgtgggac acagacatcc agtgtcacga gagacgtttc tcgcttacta 1800 tacagggcca aagcgcacca tgtatgagaa agcggtgaat tccctctacg aaatgcctgt 1860 ctcatacgac gatgctaaac tgaaaacatt tgtaaaagca gaaaagatca atctcactaa 1920 gaaagctgat cctgtaccac gtgtgatcca gccccgtgct ccccggtata atgtggaact 1980 gggtaggtat ctgagaccgg ttgagcaccc aatctaccat gctatagaca agatttgggg 2040 tggtccgact attatgaaag gttactcggt tgaacagatt ggaagacata ttgagaacgc 2100 gttccgatcg ttcaccgatc cagtggccat tggatttgat gcaagtcggt ttgatcaaca 2160 cgtgagtgtt gaagctctac gctgggaaca tagcgtatac tcacggattt atggctatcc 2220 agagcttctc acacaattgc tgcggtggca gattcataat cgcggaacag catatgcctc 2280 agacggcgcg ttcaactacc aggtggatgg taaacgcatg agtggggaca tgaacatatc 2340 attgggcaat tgcatactgg ccacagcaat cacacatgac ttcgtgacca agctgggaat 2400 tccagccaga ttaatcaaca atggagatga caacgtcctg atctgtccgg cagtggaggt 2460 aggcagagtc agacaggaac tgtacagaca ttggttgaac tacggatttg aagtcatatc 2520 agaagaacct gtgtacatcc ttgaacaggt tgaattttgc cagatgcgac cagtcttcga 2580 cggtacacaa tacaccatga tgagagaccc tcgcaccacc atgtccaaag atgcctatgc 2640 tgtaacccct tttaacacac caaccgcagc aaggaggtgg atgagagcag ttggggaatg 2700 cggactcagc cttacaggag gcctccccgt aaagcaggaa tactatactg ctcttgtaaa 2760 acacggacta gatccgaaaa acatcaaaca gggaaaagac tttgacagtg ggctatacta 2820 tcttagcaag ttatccaatc gcaaatggca ggaggtccaa gagagcgccc gctactcatt 2880 ctggcttgct ttcgggtaca caccagatga acaacgagcg ttagaggagt attttaaatc 2940 ttggacccct acgtttgaat ggtccacaac gggtattttg gcagaaattc ccgaatgtct 3000 tcttctcaaa cacaatcccc tcccaccgac gtagcccgca gacaacagac cggcactgcc 3060 gtgcgatctg aagacaacca tcgcaatcag ttggaaaaca ttgctgttgg aaaactcact 3120 aaatctgaag gagcacctgc ccaacagaac gtgatcattg cgaaagaggt ggttatcaat 3180 aaccacttca atttcaactg agctggagtg tgtgtgtgta gattcgtcct ggcctcagtg 3240 gttaaggaat ttaatcttgg ggattttgat ctcctcgatt ctgttcatct tgacgaagac 3300 acaggacacc gttgccgttt atcacgagcc atcggtgtac tcgatcgatc agacacaaaa 3360 attccaaaag atcgacatac acaatggcgg caagtagccg gtctacccga ggtagaaagc 3420 agcgcggacg tagcgtggaa gcaaaatcca gagctattcg agccaacccg cctgtccctc 3480 gacccaaccc gcagcgaaac cgtccccccc ctgcgggaac aacctgctcc atgtccgaaa 3540 ttctgcttgc agtgtcagca acaactgctg accagattct cgagattcca gtgtgtgcag 3600 ggattgactt cccggctgga acgtcgcccc gatacattgg ggcggccaaa tggctggcag 3660 cacaatcaca gatgtggaat acaattgtgt tcaactctgt gcgcatcact tgggagacat 3720 tcacagcaga caccactagc ggatacattt ccatggcatt cctctccgat tacatgttat 3780 caatacccac tggggtggag gatgttgcca ggatcgtgcc ctcagctaca atagctctga 3840 agaacagagg gccatccatt gtcatgccac agaaccgcac tgtgttcagg tgtatacagg 3900 ctggtcagtt tgctgcattg ggcagcgccg ctgacaagca aatgtattcc ccaggacgat 3960 tcattgtggc tatccctaaa gctagtgcaa cacaagcggt aggccaaatc aaaatctcgt 4020 actccgtgtc ctaccgtgga gcagcgatcc tacaacccgc cctggttcca ggcccagggc 4080 tggcaaatca ttgagcacaa ggtgagccgg catgaggttg caagaccgga acaaccagtc 4140 cttctggcag agtcctgcca atccaaagtg tttgggagcc taaatcgtat actagtagtt 4200 tgcgtgatga ccatgactgg agagtgggcg gcggctgcca accgcagact gggcgtatat 4260 agtaagcctt gacccaccca tggacaacac gtacttacga acggtgcgac atggtaactg 4320 gatacactta accctggggc aagtagatgc taggaaacta gcatcgggcc gcccacgagg 4380 gtttctgaac tcaacggagt agaacggggg gggggtaatg cccctctctt ccggccc 4437 //