Dbfetch
ID X13777; SV 1; linear; genomic DNA; STD; PLN; 5334 BP. XX AC X13777; XX DT 22-APR-1989 (Rel. 19, Created) DT 12-JUN-2006 (Rel. 88, Last updated, Version 8) XX DE Tobacco DNA for retroviral-like transposon Tnt 1-94 XX KW endonuclease; long terminal repeat; protease; retroposon; KW reverse transcriptase; transposon; transposon Tnt 1-94; KW unidentified reading frame. XX OS Nicotiana tabacum (common tobacco) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; OC asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; OC Nicotiana. XX RN [1] RP 1-5334 RA Rouze P.; RT ; RL Submitted (16-DEC-1988) to the INSDC. RL Rouze P., Institut National de la Recherche Agronomique, Lab de Biologie RL Cellulaire, INRA, Centre de Versailles, 78026 Versailles Cedex, France. XX RN [2] RX DOI; 10.1038/337376a0. RX PUBMED; 2536143. RA Grandbastien M.A., Spielmann A., Caboche M.; RT "Tnt1, a mobile retroviral-like transposable element of tobacco isolated by RT plant cell genetics"; RL Nature 337(6205):376-380(1989). XX RN [3] RP 1-5334 RX DOI; 10.1093/nar/21.9.2087. RX PUBMED; 8389038. RA Casacuberta J.M., Grandbastien M.A.; RT "Characterisation of LTR sequences involved in the protoplast specific RT expression of the tobacco Tnt1 retrotransposon"; RL Nucleic Acids Res. 21(9):2087-2093(1993). XX DR MD5; 76c63928f5199c1971d6bcb5bacf5b58. DR EuropePMC; PMC125409; 12198169. DR EuropePMC; PMC1383729; 12045146. DR EuropePMC; PMC1402257; 16445863. DR EuropePMC; PMC1838419; 17343755. DR EuropePMC; PMC2666490; 19153256. DR EuropePMC; PMC2923131; 20678194. DR EuropePMC; PMC3559876; 23382937. DR EuropePMC; PMC4070640; 24966878. DR EuropePMC; PMC4351942; 25887332. DR EuropePMC; PMC4718150; 26819544. DR EuropePMC; PMC5258746; 28174588. XX CC Data kindly reviewed (02-may-1989) by Grandbastian M.A. XX FH Key Location/Qualifiers FH FT source 1..5334 FT /organism="Nicotiana tabacum" FT /isolate="h9-Nia4" FT /mol_type="genomic DNA" FT /clone_lib="lambda NM1149" FT /clone="LNM94" FT /db_xref="taxon:4097" FT mobile_element 1..5334 FT /mobile_element_type="transposon:Tnt 1-94" FT repeat_region 1..610 FT /rpt_type=LONG_TERMINAL_REPEAT FT CDS 692..4678 FT /note="ORF" FT /db_xref="GOA:P10978" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR013103" FT /db_xref="InterPro:IPR025724" FT /db_xref="InterPro:IPR036397" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR039537" FT /db_xref="UniProtKB/Swiss-Prot:P10978" FT /protein_id="CAA32025.1" FT /translation="MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPD FT TMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLK FT KQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTI FT LHGKTTIELKDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSK FT NRSKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEE FT EECMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICI FT KTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARG FT TLYRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCD FT YCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVY FT ILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVP FT GTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPE FT RVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKK FT KVIRSRDVVFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQ FT PGEVIEQGEQLDEGVEEVEHPTQGEEQHQPLRRSERPRVESRRYPSTEYVLISDDREPE FT SLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKL FT VRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHG FT DLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSD FT PCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMK FT IVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMA FT KVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCL FT CFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI FT AATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIR FT EMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGMHSN" FT misc_feature 1385..1426 FT /note="nucleic acid binding domain" FT misc_feature 1580..1588 FT /note="protease active site" FT repeat_region 4725..5334 FT /rpt_type=LONG_TERMINAL_REPEAT XX SQ Sequence 5334 BP; 1661 A; 891 C; 1314 G; 1468 T; 0 other; tgatgatgtc catctcattg aagaagtatt aggcatgtgc ctaataagag ttttctttgg 60 tttggtagcc aaccttgttg acttggtttg gttggtagcc aaccttgttg aatccttgtt 120 ggattggtag ccaactttgt tgaattgtga aaaatgtgtg taaattgtca aatattgtag 180 gctttagagg gtgaagcttt ggctataaaa ggagagcttc aactctcatt tcttcacacc 240 aacaaagaga gaaagaaaga gtgaggtttc acagacaagg tataagaaaa tagtctgtga 300 ggaaaataga gagtgagcga tattgtagtg aggtgggaat atcaaaagag ggttatttct 360 tttgagtgtt gtagtggtct ttggagtatt tacctccgac ctacaaagtg taaaattcct 420 tactatagtg atatcagttg ctcctctcgg ggtcgtggtt ttttttccct tattcagaag 480 ggttttccac gtaaaaatct tggtgtcatt gttactcttt tattcttgtt aattaccgta 540 tctcggtgct acattattat tccgctttat taccgtgaat attattttgg taaggggttt 600 attcccaaca actggtatca gagcacaggt tctgctcgtt cactgaaata ctattcactg 660 tcggtagtac tatacttggt gaaaaataaa aatgtctgga gtaaagtacg aggtagcaaa 720 attcaatgga gataacggtt tctcaacatg gcaaagaagg atgagagatc tgctcatcca 780 acaaggatta cacaaggttc tagatgttga ttccaaaaag cctgatacca tgaaagctga 840 ggattgggct gacttggatg aaagagctgc tagtgcaatc aggttgcact tatcagatga 900 tgtggtaaat aacatcattg atgaagacac tgcacgtgga atttggacaa ggttggaaag 960 cctatacatg tccaaaacgc tgacaaataa attgtacctg aagaagcagt tatacgccct 1020 acacatgagt gaaggtacga attttttgtc acatttaaat gtgtttaacg gactaatcac 1080 acagcttgcc aacctcggag tgaaaatcga ggaagaagat aaagccatct tgctattgaa 1140 ctcgttgcca tcttcgtacg ataatttggc aacaaccatc ctgcacggta agactactat 1200 tgagttgaaa gatgtcacat cggctcttct actcaatgag aagatgagaa agaagcctga 1260 aaatcaagga caggctctca tcacagaagg tagaggcagg agttatcaaa ggagttcgaa 1320 caactatggt agatccggag ctcgtgggaa gtcaaagaat cgatccaaat caagagtcag 1380 aaattgctac aactgtaatc aaccaggtca cttcaaaaga gattgcccaa atccaaggaa 1440 gggcaaaggt gaaaccagtg gccagaagaa tgacgacaac acagccgcca tggtgcaaaa 1500 taatgataat gttgtcctct ttataaatga ggaagaggaa tgcatgcacc tgtcaggtcc 1560 agagtcggaa tgggtggttg acacagcggc atctcaccat gccacaccgg taagagatct 1620 tttttgcaga tatgtagcag gtgatttcgg cacagtgaaa atgggtaaca caagttactc 1680 aaagattgcg gggattggtg acatttgtat caagacaaat gtcggatgca cattggttct 1740 aaaggatgtg cggcatgtac ctgatttgcg gatgaacttg atctcgggaa ttgctttaga 1800 ccgagatgga tacgagagtt attttgcaaa tcaaaagtgg agactcacta agggatcatt 1860 ggtgattgca aagggagttg ctcgtggcac gttgtacagg acaaatgcag aaatatgcca 1920 aggtgaattg aacgcggcac aagatgagat ttctgtagat ttatggcaca aaagaatggg 1980 tcatatgagc gagaagggat tgcagattct tgccaagaaa tcactcattt cttatgccaa 2040 aggtacaact gtaaaacctt gtgactactg tttatttggt aagcagcata gagtctcatt 2100 tcagacatcg tctgaaagaa aattgaatat acttgattta gtatattctg atgtttgcgg 2160 cccaatggaa attgaatcaa tgggcggtaa caaatatttt gttactttta ttgatgatgc 2220 ttcacgaaaa ttatgggttt atattttgaa aaccaaagat caggtgtttc aagttttcca 2280 gaagtttcat gctctagtag aaagggagac gggtcgaaag ctaaagcgtc tccgaagtga 2340 caatggaggt gagtacactt caagggaatt tgaagagtat tgttcaagtc atgggatcag 2400 acatgaaaag acagttcctg gaaccccaca gcacaatggc gtagccgaga ggatgaaccg 2460 caccattgtg gagaaggtga gaagcatgct cagaatggct aaactgccta agtcattctg 2520 gggtgaagca gttcagacag cctgttacct gatcaatagg agtccatcag ttccgttggc 2580 gtttgaaatc ccagagagag tctggaccaa caaggaggtg tcctactcgc atctgaaggt 2640 gttcggttgc agagcttttg cacatgtacc aaaagagcag agaacaaagc tggatgataa 2700 atctattccc tgcatattta tcggatatgg agatgaagag ttcgggtaca gactgtggga 2760 tcctgtaaag aagaaggtca tcagaagtag agatgtagtc ttccgagaaa gtgaagttag 2820 aactgctgct gatatgtcag aaaaggtgaa gaatggtata attcctaact ttgttactat 2880 tccttctact tctaacaatc ccacaagtgc agaaagtacg accgacgagg tttccgagca 2940 gggggagcaa cctggtgagg ttattgagca gggggagcaa cttgatgaag gtgtcgagga 3000 agtggagcac cccactcagg gagaagaaca acatcaacct ctgaggagat cagagaggcc 3060 aagggtagag tcacgcaggt acccttccac agagtatgtc ctcatcagtg atgataggga 3120 gccagaaagt cttaaggagg tgttgtccca tccagaaaag aaccagttga tgaaagctat 3180 gcaagaagag atggaatctc tccagaaaaa tggcacatac aagctggttg aacttccaaa 3240 gggtaaaaga ccactcaaat gcaaatgggt ctttaaactc aagaaagatg gagattgcaa 3300 gctggtcaga tacaaagctc gattggtggt taaaggcttc gaacagaaga aaggtattga 3360 ttttgacgaa attttctccc ccgttgttaa aatgacttct attcgaacaa ttttgagctt 3420 agcagctagc ctagatcttg aagtggagca gttggatgtg aaaactgcat ttcttcatgg 3480 agatttggaa gaggagattt atatggagca accagaagga tttgaagtag ctggaaagaa 3540 acacatggtg tgcaaattga ataagagtct ttatggattg aagcaggcac caaggcagtg 3600 gtacatgaag tttgattcat tcatgaaaag tcaaacatac ctaaagacct attctgatcc 3660 atgtgtatac ttcaaaagat tttctgagaa taactttatt atattgttgt tgtatgtgga 3720 tgacatgcta attgtaggaa aagacaaggg gttgatagca aagttgaaag gagatctgtc 3780 caagtcattt gatatgaagg acttgggccc agcacaacaa attctaggga tgaagatagt 3840 tcgagagaga acaagtagaa agttgtggct atctcaggag aagtacattg aacgtgtact 3900 agaacgcttc aacatgaaga atgctaagcc agtcagcaca cctcttgctg gtcatctaaa 3960 gttgagtaaa aagatgtgtc ctacaacagt ggaagagaaa gggaacatgg ctaaagttcc 4020 ttattcttca gcagtcggaa gcttgatgta tgcaatggta tgtactagac ctgatattgc 4080 tcacgcagtt ggtgttgtca gcaggtttct tgaaaatcct ggaaaggaac attgggaagc 4140 agtcaagtgg atactcaggt acctgagagg taccacggga gattgtttgt gctttggagg 4200 atctgatcca atcttgaagg gctatacaga tgctgatatg gcaggtgaca ttgacaacag 4260 aaaatccagt actggatatt tgtttacatt ttcaggggga gctatatcat ggcagtctaa 4320 gttgcaaaag tgcgttgcac tttcaacaac tgaagcagag tacattgctg ctacagaaac 4380 tggcaaggag atgatatggc tcaagcgatt ccttcaagag cttggattgc atcagaagga 4440 gtatgtcgtc tattgtgaca gtcaaagtgc aatagacctt agcaagaact ctatgtacca 4500 tgcaaggacc aaacacattg atgtgagata tcattggatt cgagaaatgg tagatgatga 4560 atctctaaaa gtcttgaaga tttctacaaa tgagaatccc gcagatatgc tgaccaaggt 4620 ggtaccaagg aacaagttcg agctatgcaa agaacttgtc ggcatgcatt caaactagaa 4680 gacagtgcta cctcctctgg atgaatgaga ctggaggggg agattgatga tgtccatctc 4740 attgaagaag tattaggcat gtgcctaata agagttttct ttggtttggt agccaacctt 4800 gttgacttgg tttggttggt agccaacctt gttgaatcct tgttggattg gtagccaact 4860 ttgttgaatt gtgaaaaatg tgtgtaaatt gtcaaatatt gtaggcttta gagggtgaag 4920 ctttggctat aaaaggagag cttcaactct catttcttca caccaacaaa gagagaaaga 4980 aagagtgagg tttcacagac aaggtataag aaaatagtct gtgaggaaaa tagagagtga 5040 gcgatattgt agtgaggtgg gaatatcaaa agagggttat ttcttttgag tgttgtagtg 5100 gtctttggag tatttacctc cgacctacaa agtgtaaaat tccttactat agtgatatca 5160 gttgctcctc tcggggtcgt ggtttttttt cccttattca gaagggtttt ccacgtaaaa 5220 atcttggtgt cattgttact cttttattct tgttaattac cgtatctcgg tgctacatta 5280 ttattccgct ttattaccgt gaatattatt ttggtaaggg gtttattccc aaca 5334 //