ID X13063; SV 1; linear; genomic RNA; STD; VRL; 5641 BP. XX AC X13063; XX DT 17-NOV-1988 (Rel. 18, Created) DT 24-APR-2003 (Rel. 75, Last updated, Version 9) XX DE Turnip yellows virus (BWYV-FL1) genomic RNA XX KW coat protein; genomic RNA; ORF1; ORF2; ORF3; ORF4; ORF5; ORF6; KW unidentified reading frame ribosomal slippage; viral genome. XX OS Turnip yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5641 RA Richards K.; RT ; RL Submitted (26-SEP-1988) to the INSDC. RL Richards K., Institut de Biologie Moleculaire des Plantes, 12 Rue du RL General Zimmer, 67000 Strasbourg, FRANCE. XX RN [2] RP 1-5641 RX DOI; 10.1093/nar/16.21.9917. RX PUBMED; 3194229. RA Veidt I., Lot H., Leiser M., Scheidecker D., Guilley H., Richards K., RA Jonard G.; RT "Nucleotide sequence of beet western yellows virus RNA"; RL Nucleic Acids Res. 16(21):9917-9932(1988). XX RN [3] RP 1545-1628 RX DOI; 10.1093/nar/21.3.401. RX PUBMED; 7680118. RA Garcia A., Van Duin J., Pleij C.W.A.; RT "Differential response to frameshift signals in eukaryotic and prokaryotic RT translational systems"; RL Nucleic Acids Res. 21(3):401-406(1993). XX DR MD5; c828604c4d973cdf883623417402b7ce. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC2583970; 18937850. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC6502502; 31059508. DR GOA; P0DJZ8. DR UniProtKB/Swiss-Prot; P0DJZ8; ORF3A_TYYVF. XX FH Key Location/Qualifiers FH FT source 1..5641 FT /organism="Turnip yellows virus" FT /isolate="FL1" FT /mol_type="genomic RNA" FT /db_xref="taxon:131083" FT CDS 32..781 FT /product="hypothetical protein" FT /note="ORF 1" FT /db_xref="GOA:P09504" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/Swiss-Prot:P09504" FT /protein_id="CAA31462.1" FT /translation="MQFLAHDNFHTLQVKKVRFLHPQQEVFLLAGLLLNIKQFVRAIKE FT RNNVFKIDVFLRSLLYQLPFHLGSCFHDAPRELIPATEPELCAWFSLQTGYAPASTSGR FT VNLHVPGTKTSRRRIIQRSFASDFSEKLKRFPECLFVSLELFQRLLSTWTKDVERRIFF FT SCREIPLGSDTLMELANLGEFLRVMVVGEQFHNSRLLSRLAVHCYKIYGEDGFISFWRI FT ANLDHFDCFLTPEEILFSSSVYTEMFV" FT CDS 174..1997 FT /product="hypothetical protein" FT /note="ORF 2" FT /db_xref="GOA:P09506" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/Swiss-Prot:P09506" FT /protein_id="CAA31463.1" FT /translation="MYSKLMFFFALCSISFLFTSEAASTMLLESSYLPLNQSYAPGFLY FT KRDMLPPPLQAVLTYTCPEPRPLAEESYNDLLRAISQKSSSDFQNAYSLALSFSSDFYQ FT HGLKTLKDVSFLAVEKFLWGLTRLWSSLILASFSALWWLVSNFTTPVFCLALLYTVTKY FT MVKTVSFLFGGLPIWIISIAFSLLKKSFSALRSTPKCLYEKAIDGFKSFTIPQSPPKSC FT VIPITHASGNHAGYASCIKLYNGENALMTATHVLRDCPNAVAVSAKGLKTRIPLAEFKT FT IAKSDKGDVTLLRGPPNWEGLLGCKAANVITAANLAKCKASIYSFDRDGWVSSYAEIVG FT SEGTDVMVLSHTEGGHSGSPYFNGKTILGVHSGASATGNYNLMAPIPSLPGLTSPTYVF FT ETTAPQGRVFAQEDIAEIEGLYAQVMKRVQQAEDFKPKTGKYWGDMEDDEDIFFESKED FT LSGNGVRGTVRGTNGEGSSTPKTSNVDGKEMMEKIISSLVGKINLENIERKVIEEISAK FT AMKTPKSRRRRAPKKQPESSKDTSPRSTTGKYQPPHVRSPASVTAANCPNTTTPSKKKN FT LAGGRPSSGTIPRWVRKQAASAGPSSAPKQN" FT CDS join(174..1556,1556..3280) FT /product="hypothetical protein" FT /note="ORF 3" FT /db_xref="GOA:P09507" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/Swiss-Prot:P09507" FT /protein_id="CAA31464.2" FT /translation="MYSKLMFFFALCSISFLFTSEAASTMLLESSYLPLNQSYAPGFLY FT KRDMLPPPLQAVLTYTCPEPRPLAEESYNDLLRAISQKSSSDFQNAYSLALSFSSDFYQ FT HGLKTLKDVSFLAVEKFLWGLTRLWSSLILASFSALWWLVSNFTTPVFCLALLYTVTKY FT MVKTVSFLFGGLPIWIISIAFSLLKKSFSALRSTPKCLYEKAIDGFKSFTIPQSPPKSC FT VIPITHASGNHAGYASCIKLYNGENALMTATHVLRDCPNAVAVSAKGLKTRIPLAEFKT FT IAKSDKGDVTLLRGPPNWEGLLGCKAANVITAANLAKCKASIYSFDRDGWVSSYAEIVG FT SEGTDVMVLSHTEGGHSGSPYFNGKTILGVHSGASATGNYNLMAPIPSLPGLTSPTYVF FT ETTAPQGRVFAQEDIAEIEGLYAQVMKRVQQAEDFKPKTGKYWGDMEDDEDIFFESKED FT LSGKRSARHRPRNKRRRQLHPKDKQRRWERDDGENNLISSGKDKSREHREESDRGDLRE FT SDENSEIPPQKSPKETAGEFERYFSSLYNWEVPTSPREVPGFRHCGKLPQYYHPKQKEE FT SSWGKTLVGNHPALGEKTSGFGWPKFGPEAELKSLRLQASRWLERAQSAEIPSDAERER FT VIQKTADVYHPCQTNGPAATRGGTLTWNNFMIDFKQAVFSLEFDAGIELPYIAYGKPTH FT RGWVEDQKLLPILAQLTFFRLQKMLEVNFEDMGPEELVRNGLCDPIRLFVKGEPHKQAK FT LDEGRYRLIMSVSLVDQLVARVLFQNQNKREIALWRAIPSKPGFGLSTDEQVLDFVESL FT ARQVGTTTTEVVANWKNYLTPTDCSGFDWSVADWMLHDDMIVRNRLTIDLNPATERLRS FT CWLRCISNSVLCLSDGTLLAQIHPGVQKSGSYNTSSSNSRIRVMAAFHTGAIWAMAMGD FT DALESNPADLAAYKKLGFKVEVSGQLEFCSHIFRAPDLALPVNENKMIYKLIYGYNPGS FT GNAEVVSNYLAACFSVLNELRHDPASVELLYSWLVDPVLPQKIPGE" FT CDS 3483..4091 FT /product="coat protein" FT /note="ORF 4" FT /db_xref="GOA:P09508" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/Swiss-Prot:P09508" FT /protein_id="CAA31465.1" FT /translation="MNTVVGRRIINGRRRPRRQTRRAQRPQPVVVVQTSRATQRRPRRR FT RRGNNRTGRTVPTRGAGSSETFVFSKDNLAGSSSGAITFGPSLSDCPAFSNGMLKAYHE FT YKISMVILEFVSEASSQNSGSIAYELDPHCKLNSLSSTINKFGITKPGKRAFTASYING FT TEWHDVAEDQFRILYKGNGSSSIAGSFRITIKCQFHNPK" FT CDS 3483..5495 FT /transl_except=(pos:4089..4091,aa:Tyr) FT /note="ORF 6" FT /note="readthrough protein" FT /db_xref="GOA:P09514" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/Swiss-Prot:P09514" FT /protein_id="CAA31467.2" FT /translation="MNTVVGRRIINGRRRPRRQTRRAQRPQPVVVVQTSRATQRRPRRR FT RRGNNRTGRTVPTRGAGSSETFVFSKDNLAGSSSGAITFGPSLSDCPAFSNGMLKAYHE FT YKISMVILEFVSEASSQNSGSIAYELDPHCKLNSLSSTINKFGITKPGKRAFTASYING FT TEWHDVAEDQFRILYKGNGSSSIAGSFRITIKCQFHNPKYVDEEPGPSPGPSPSPQPTP FT QKKYRFIVYTGVPVTRIMAQSTDDAISLYDMPSQRFRYIEDENMNWTNLDSRWYSQNSL FT KAIPMIIVPVPQGEWTVEISMEGYQPTSSTTDPNKDKQDGLIAYNDDLSEGWNVGIYNN FT VEITNNKADNTLKYGHPDMELNGCHFNQGQCLERDGDLTCHIKTTGDNASFFVVGPAVQ FT KQSKYNYAVSYGAWTDRMMEIGMIAIALDEQGSSGSVKTERPKRVGHSMAVSTWETIKL FT PEKGNSEGYETSQRQDSKTPPTASGGSDTLDVEEGGLPLPVEEEIPDFVGDNPWSDLST FT KNSQEEEAMSSESGLRPQLKPPGLPKPQPIRTIRNFDPTPDLVEAWRPDVNPGYSKADV FT AAATIIAGGSIKDGRSMIDKRNKAVLDGRKSWGSSLASSLTGGTLKASAKSEKLAKLTT FT SERARYERIKRQQGSTRASEFLESLLAGEDPDSRF" FT CDS 3514..4041 FT /product="hypothetical protein" FT /note="ORF 5" FT /db_xref="GOA:P09511" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/Swiss-Prot:P09511" FT /protein_id="CAA31466.1" FT /translation="MEEDDHAGKHDALSALSQWLWSKPLGQHNADLDDDEEVTTGQEEL FT FLPEEQVRARHLFSQKTISREVPAEQSRSGRVYQTARHSLMECSRPTMSIKSQWSFWSS FT SPKPLPKIPVPSLTSWTHTVNSTPFPQLSTSSGSQSPGKGRLQRLTSTERNGTTLPRTN FT SGSSTKAMVLHR" XX SQ Sequence 5641 BP; 1574 A; 1425 C; 1343 G; 1299 T; 0 other; acaaaagaaa ccaggaggga atccttagtt gatgcaattt ctcgctcacg ataactttca 60 cactttgcaa gtcaagaaag tccgattcct ccaccctcaa caagaagtgt ttcttttagc 120 aggtttattg ctcaatataa aacaatttgt acgagcaatc aaagagcgca ataatgtatt 180 caaaattgat gtttttcttc gctctttgct ctatcagctt ccttttcacc tcggaagctg 240 cttccacgat gctcctcgag agctcatacc tgccactgaa ccagagttat gcgcctggtt 300 ttctttacaa acgggatatg ctcccgcctc cacttcaggc cgtgttaact tacacgtgcc 360 cggaaccaag acctctcgca gaagaatcat acaacgatct tttgcgagcg atttctcaga 420 aaagctcaag cgatttccag aatgcttatt cgttagcctt gagcttttcc agcgacttct 480 atcaacatgg actaaagacg ttgaaagacg tatctttttt agctgtcgag aaattcctct 540 ggggtctgac acgcttatgg agctcgctaa tcttggcgag tttctccgcg ttatggtggt 600 tggtgagcaa tttcacaact cccgtcttct gtctcgcctt gctgtacact gttacaaaat 660 atatggtgaa gacggtttca tttctttttg gaggattgcc aatctggatc atttcgattg 720 ctttctcact cctgaagaaa tccttttcag ctcttcggtc tacaccgaaa tgtttgtatg 780 aaaaggccat agacggtttc aagagtttca ctatcccgca gagtccccca aaatcttgcg 840 tgattcccat cacccacgca agcggaaacc acgctggcta tgccagttgt atcaagctat 900 ataacggaga aaatgctcta atgacggcaa ctcacgtcct acgtgattgc cccaacgccg 960 tggctgtttc cgccaaagga ctcaaaacgc ggattccact cgcagaattc aaaacaatcg 1020 cgaaatccga caaaggtgat gttaccctcc ttcgcggccc ccccaattgg gaaggactgt 1080 tgggctgtaa agcggccaac gttataacag ctgctaacct agcgaaatgc aaagcatcca 1140 tatactcttt tgacagagat ggctgggtta gcagttatgc cgagatcgta ggctcagaag 1200 gtacagatgt tatggttctg agccatacgg aaggaggaca ctccggaagc ccctacttca 1260 atggtaaaac catcttgggg gttcattcag gtgccagtgc tactggaaat tacaatttaa 1320 tggcaccaat cccatccctc cccggactta ctagtccgac ttatgtgttc gaaaccaccg 1380 caccacaagg aagagttttc gcacaagaag atatcgctga aatcgaaggc ctctatgcac 1440 aagtaatgaa aagagttcaa caagcggaag atttcaaacc caaaactgga aagtattggg 1500 gtgatatgga ggatgatgaa gacattttct tcgaaagcaa agaagatctg tcgggaaacg 1560 gagtgcgcgg caccgtccgc ggaacaaacg gagaaggcag ctccacccca aagacaagca 1620 acgtcgatgg gaaagagatg atggagaaaa taatctcatc tctagtggga aagataaatc 1680 tcgagaacat cgagaggaaa gtgatagagg agatctccgc gaaagcgatg aaaactccga 1740 aatcccgccg cagaagagcc ccaaagaaac agccggagag ttcgaaagat acttctcctc 1800 gctctacaac tgggaagtac caacctcccc acgtgaggtc cccggcttcc gtcactgcgg 1860 caaactgccc caatactacc accccaagca aaaagaagaa tctagctggg ggaagaccct 1920 cgtcgggaac catcccgcgt tgggtgagaa aacaagcggc ttcggctggc ccaagttcgg 1980 ccccgaagca gaactgaaga gcctgcgact gcaggcttca cggtggctgg aacgcgccca 2040 gtccgcagaa ataccctctg acgctgagag ggagcgtgtg attcaaaaga ccgcagatgt 2100 ttaccatcct tgccaaacaa atgggcctgc ggcaacccga ggaggaacac taacctggaa 2160 caacttcatg attgatttca aacaggcagt gttctcgctg gagttcgatg ccggaatcga 2220 gctcccctat attgcctatg gcaagcccac acaccgtggg tgggttgaag accagaaact 2280 ccttccaatc ctagctcaat tgaccttctt ccgactacag aagatgttgg aggtcaattt 2340 cgaagatatg ggacctgagg agctggtccg gaacggtttg tgtgatccca tccgattatt 2400 cgtgaagggt gagccgcaca agcaagcgaa gctcgatgaa ggccgctacc gcctcataat 2460 gagcgtttcc ctcgtggatc aactggtagc ccgggttctg tttcaaaatc agaacaagcg 2520 ggaaattgcc ctgtggaggg ccatccccag caaacccggt tttggcttgt ctacggatga 2580 gcaagtgctg gactttgtgg aaagtctggc ccgtcaagta ggcaccacta cgacagaggt 2640 ggttgccaat tggaagaatt acttgacgcc cacggattgc tccggttttg actggagtgt 2700 tgcggattgg atgcttcacg acgacatgat cgtccgcaac agacttacca tcgacctcaa 2760 ccccgctaca gaaagattaa gatcttgctg gttgaggtgc atttcaaact cagtattgtg 2820 cctgagtgat ggcacccttt tagcccaaat tcatccgggc gttcagaaga gtgggagcta 2880 taatacatca agctccaact cccggatccg agttatggcc gccttccaca caggtgccat 2940 ctgggctatg gcgatgggtg atgatgccct cgagtccaat cccgctgacc tagcagcgta 3000 caagaaacta ggtttcaagg ttgaggtttc cggacaactg gaattctgct ctcatatctt 3060 tagagcgccg gacctcgccc tccctgtgaa cgaaaataag atgatctaca aactgatcta 3120 tggctataat ccagggagcg gaaacgctga ggtagtttca aactacttgg ccgcttgttt 3180 ctcagttctg aacgagttgc ggcatgatcc agcgtccgtt gaacttcttt actcgtggtt 3240 agtcgatccg gtgctaccac aaaagatacc aggagagtaa agaagaagaa agtcagctta 3300 cattgaaatt ttaaagaggt ttctgcaaca gtaagagact taagcaaacc caattaaaga 3360 tacaacggat tacaaattcc tagcaggctt cgccgcaggc ttcgtttcat cgataccaat 3420 atccgtgatc agtatctatt tcatctacct aagaatctcc aaacacgtac gcgaaatcgt 3480 taatgaatac ggtcgtgggt aggagaatta tcaatggaag aagacgacca cgcaggcaaa 3540 cacgacgcgc tcagcgccct cagccagtgg ttgtggtcca aacctctcgg gcaacacaac 3600 gccgacctag acgacgacga agaggtaaca accggacagg aagaactgtt cctaccagag 3660 gagcaggttc gagcgagaca tttgttttct caaaagacaa tctcgcggga agttccagcg 3720 gagcaatcac gttcgggccg agtctatcag actgcccggc attctctaat ggaatgctca 3780 aggcctacca tgagtataaa atctcaatgg tcattttgga gttcgtctcc gaagcctctt 3840 cccaaaattc cggttccatc gcttacgagc tggacccaca ctgtaaactc aactcccttt 3900 cctcaactat caacaagttc gggatcacaa agcccgggaa aagggcgttt acagcgtctt 3960 acatcaacgg aacggaatgg cacgacgttg ccgaggacca attcaggatc ctctacaaag 4020 gcaatggttc ttcatcgata gctggttctt tcagaatcac cattaagtgt caattccaca 4080 accccaaata ggtagacgag gaacccggcc ctagcccagg gccttctccc tctccacaac 4140 ccacacccca aaagaaatat cgttttatcg tctatactgg agtccccgtg actcgtataa 4200 tggctcaatc tacggatgat gccatctctt tgtatgatat gccgtcccaa cggtttcgct 4260 acatagagga cgagaacatg aactggacga acctcgattc tcgatggtat tcccagaatt 4320 ctttgaaagc catcccgatg ataatagtgc cagtccctca aggtgagtgg accgtggaaa 4380 tatcgatgga ggggtatcaa ccaacctcaa gcaccacaga tcctaacaag gacaaacaag 4440 atggtctcat cgcctacaac gatgatctta gtgaaggttg gaacgtgggg atttacaata 4500 atgtggagat aaccaacaac aaggccgata atactttgaa gtatggccac ccagacatgg 4560 aactcaatgg ctgtcatttc aatcaaggac agtgtctgga aagagatgga gatttgactt 4620 gtcatatcaa gacgactggt gacaatgcct ccttctttgt tgttggaccc gctgtccaga 4680 agcaatctaa atataattac gccgtttcgt acggagcctg gacagatcgg atgatggaga 4740 tagggatgat cgccatagca cttgatgaac aaggctcatc cggttccgta aagacagaaa 4800 gaccaaagag agttgggcac tccatggcag tctcaacctg ggagactata aaattgccgg 4860 agaagggaaa ctccgaggga tacgaaacca gtcaaagaca agactctaaa actcctccca 4920 cagctagtgg gggttctgac acgctggacg tcgaagaagg aggcttgccc cttcctgttg 4980 aagaagagat ccccgatttt gttggggata acccctggtc tgacttatcg actaagaatt 5040 cacaggaaga agaggctatg tcatcagaga gtggtcttag accccagttg aagcctcctg 5100 gtctgccaaa acctcaaccg atcagaacga ttcgaaactt cgatccaaca ccggatttgg 5160 ttgaagcgtg gcgacccgat gtgaaccccg gatattccaa agcagatgtg gcagccgcta 5220 ctatcatcgc cgggggttcc atcaaagacg gccgttctat gattgataaa cgaaataaag 5280 ctgtgttaga cggtcgcaag agttggggtt cctccttggc ttcctccctc acgggtggta 5340 cgctcaaggc ctccgccaag tcggagaagc ttgccaaact taccacgagt gaaagggcaa 5400 ggtatgaacg gattaagcgt cagcaaggct ccacaagagc ctcggaattc ctagaatcac 5460 ttctagctgg cgaagacccc gactcaaggt tctgaaggga tacaacctga cccttcccgg 5520 tccagatgaa cccgtccaaa tcatcatcgt caagccaggg actttaaact ggaacgaatc 5580 cgttttacgg ataggcaacg agtgttttac gctgggagaa atccctacgg cacttcggtg 5640 t 5641 //