Dbfetch
ID X07653; SV 1; linear; genomic RNA; STD; VRL; 5677 BP. XX AC X07653; XX DT 16-JUL-1988 (Rel. 16, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 13) XX DE Barley yellow dwarf virus - PAV genomic RNA XX KW coat protein; genome; RNA polymerase; unidentified reading frame. XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5677 RA Miller W.A.; RT ; RL Submitted (16-MAY-1988) to the INSDC. RL Miller W.A., CSIRO, Division of Plant Industry, GPO Box 1600, Canberra RL A.C.T. 2601, Australia. XX RN [2] RX DOI; 10.1093/nar/16.13.6097. RX PUBMED; 3399386. RA Miller W.A., Waterhouse P.M., Gerlach W.L.; RT "Sequence and organization of barley yellow dwarf virus genomic RNA"; RL Nucleic Acids Res. 16(13):6097-6111(1988). XX DR MD5; 885d5ab32b52c7561d6e2e7f7d358baa. DR EuropePMC; PMC112095; 10846080. DR EuropePMC; PMC2583970; 18937850. DR EuropePMC; PMC3416697; 22559081. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX CC Authors suggest the occurence of CC a 99K "transframe" protein, a fusion of the preceding 39K protein CC and the 50K. The "stop" is read through by a translational frame CC shift. XX FH Key Location/Qualifiers FH FT source 1..5677 FT /organism="Barley yellow dwarf virus PAV" FT /mol_type="genomic RNA" FT /country="Australia" FT /db_xref="taxon:2169986" FT CDS join(142..1101,1158..2744) FT /product="RNA directed RNA polymerase" FT /db_xref="GOA:P09505" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/Swiss-Prot:P09505" FT /protein_id="CAA30498.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEVKSEKLERLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE FT KNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNATLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQLEGLCTASGFESPFPILGLP FT EIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNALVAVERRVFTVGKGDKAIYP FT PRPEHDIFTDTMDYFQKSIIEEVGYCKTYPAQLLANSYSAGKRAMYHKAIASLKTVPYH FT QKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTRLKFNEKKIMHAIDSVFGSP FT TVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVSEQALKWEHGIYNGIFGDSE FT MALALEHQITNNIKMFVEDKMLRFKVRGHRMSGDINTSMGNKLIMCGMMHAYLKKLGVE FT AELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEKPVYELEQLEFCQSKPVSIN FT GKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGLVLNAGVPILESFYKCLYRS FT SGYKKVSEEFIKNVISYGTDERLQGRRTYNETPITNHSRMSYWESFGVDPKIQQIVERY FT YDGLTVSAQLQSVKVTTPHLQSILLSIPENHSQNEY" FT exon 142..1101 FT /number=1 FT misc_feature 1101..1202 FT /note="pot. frame shift region" FT intron 1102..1157 FT /number=1 FT exon 1158..2744 FT /number=2 FT CDS 2858..3460 FT /product="coat protein" FT /db_xref="GOA:P09510" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:P09510" FT /protein_id="CAA30493.1" FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANFVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASANTAGAIFIELDTACKQSALGSYINSFTISKTASKTFRSEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK" FT CDS 2901..3362 FT /gene="17K ORF" FT /db_xref="GOA:P09513" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/Swiss-Prot:P09513" FT /protein_id="CAA30494.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA FT GLRYSYSQLTTLKPTPPGQSNSAPVYRNAQRFQTEYSSPTIVTRSQVSELSLSHTRPPI FT RQALSLLSSTPRASNQPWVATLIPSPSARPPPRPSGQRQLMGRNSRNQR" FT CDS 3461..4813 FT /transl_except=(pos:3461..3463,aa:Met) FT /gene="50K ORF" FT /db_xref="GOA:P09516" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:P09516" FT /protein_id="CAA30495.2" FT /translation="MDSSTPEPKPAPEPTPTPQPTPAPQPTPEPTPAPVPKRFFEYIGT FT PTGTISTRENTDSISVSKLGGQSMQYIENEKCETKVIDSFWSTNNNVSAQAAFVYPVPE FT GSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNSSGDNWGVGNYKGCSFKNFLATNTW FT RPGHKDLKLTDCQFTDGQIVERDAVMSFHVEATGKDASFYLMAPKTMKTDKYNYVVSYG FT GYTNKRMEFGTISVTCDESDVEAERITRHAETPIRSKHILVSERYAEPLPTIVNQGLCD FT VKTPEQEQTLVDEDDRQTVSTESDIALLEYEAATAEIPDAEEDVLPSKEQLSSKPMDTS FT GNIIPKPKEPEVLGTYQGQNIYPEDVPPMARQKLREAANAPSTLLYERRTPKKSGNFLS FT RLVEANRSPTTPTAPSVSTTSNMTREQLREYTRIRNSSGITAAKAYKAQFQ" FT misc_feature 4621..5160 FT /note="highly variable region" FT CDS 4920..5111 FT /gene="6.7K ORF" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/Swiss-Prot:P09517" FT /protein_id="CAA30496.1" FT /translation="MEDLHVIAVCILALTVLSGVGAVLSCCRWCCSNPFPPSLSSVQAK FT DSRSVRETIKNIEGASAQ" FT CDS 5309..5476 FT /gene="6.0K ORF" FT /db_xref="UniProtKB/Swiss-Prot:P09518" FT /protein_id="CAA30497.1" FT /translation="MYTRSSGLKTLKLDDLVQVVKLTRVDTPHPAQHVGIPTIRNVGLL FT EPLPVMQGRV" XX SQ Sequence 5677 BP; 1674 A; 1360 C; 1392 G; 1250 T; 1 other; ngtgaagatt gaccatctca caaaagctgt tacgtgcttg taacacacta cgcgcccgtt 60 ttgtattcgg gaagtagttg cgaaaacggt ccccttattg cctgacaagc taagggccac 120 ccttctttcc ccaccgccat catgtttttc gaaatactaa taggtgctag cgccaaggcg 180 gtcaaagact tcattagcca ttgctattct agattgaaat ctatatacta ttctttcaag 240 cgatggctaa tggagatatc agggcaattt aaggcccacg acgcctttgt caacatgtgc 300 tttgggcaca tggctgacat tgaggacttc gaggcggaac tcgctgagga gttcgccgag 360 agggaggatg aggtggaaga ggcgaggagc ctcttgaaac tgctggtcgc ccaaaaatct 420 aaatctgggg tgaccgaggc ttggaccgac ttttttacaa agtcgagagg tggtgtttac 480 gcaccacttt cctgcgagcc taccaggcag gagctagaag tcaagagtga gaaactcgag 540 cgacttctag aagagcagca ccaatttgag gtgcgagcgg ccaagaaata catcaaggaa 600 aagggccgcg gcttcatcaa ctgctggaac gacttgcgga gtcgtctcag gttggtgaag 660 gacgtcaagg acgaggcgaa ggacaacgcc agagctgctg ccaagattgg agcagaaatg 720 ttcgcccctg ttgacgtgca ggacctctac agtttcacgg aggtcaagaa ggtggagacc 780 ggcctcatga aggaggtcgt gaaagagaaa aacggcgaag aagagaaaca cctcgaaccc 840 atcatggaag aggtgaggtc catcaaggac accgccgaag ccagggacgc cgcctccact 900 tggataacag agacagttaa gctgaagaac gcaacgctta acgcagatga actgtctctt 960 gccaccatcg cccgctacgt tgaaaacgta ggggacaagt tcaaactcga cattgctagt 1020 aaaacatatc taaagcaagt cgcatcgatg tctgtaccaa ttccaaccaa caaagacatc 1080 aaattgaaga tggtgctaca gagtcctgaa gcacgtgcca ggcgggaacg catggacgtg 1140 cttgactctg tgggttttta gaggggctct gtaccgcctc tggttttgag agcccattcc 1200 ctattctcgg gctgccagag attgcggtca cagacggagc ccggctccgc aaggttagta 1260 gcaatattag ataccttagc caaacccatc taggtcttgt atataaggca ccaaatgcct 1320 ccctgcacaa cgcgcttgtg gcagtggaga gaagagtttt tacagtagga aagggggaca 1380 aggcaatcta ccccccccgc cctgagcatg acattttcac tgatacgatg gattactttc 1440 aaaaatccat tatagaagag gtgggatact gtaaaacata tccagcgcaa ctcctggcta 1500 atagctatag cgcaggaaag agggccatgt atcacaaagc cattgcatcc ttgaaaactg 1560 tcccatatca tcagaaggat gccaatgtgc aagctttcct gaagaaggaa aaacattgga 1620 tgaccaagga catcgccccc cgattgattt gcccccgcag caagcggtat aatatcatcc 1680 taggaactcg tttgaaattc aacgagaaga agatcatgca cgccatcgat agtgtgtttg 1740 gatcccccac tgtgctttct ggttatgaca acttcaaaca aggaagaatc atagccaaaa 1800 agtggcaaaa gtttgcatgc cccgtcgcca tcggcgtgga tgctagccgc tttgaccaac 1860 atgtgtcaga gcaggcgctt aagtgggaac acgggatata caatggaatc ttcggagaca 1920 gcgaaatggc tcttgcactt gaacaccaaa tcaccaacaa catcaagatg tttgttgaag 1980 acaaaatgct taggttcaag gtaagaggcc acagaatgtc cggtgacatt aataccagca 2040 tgggaaataa gctcataatg tgcggcatga tgcacgcata tcttaagaag ctgggtgttg 2100 aagctgaact atgtaataac ggagacgact gtgtcatcat cactgataga gccaatgaga 2160 agctctttga tggcatgtac gaccatttcc tccagtatgg cttcaacatg gtgaccgaaa 2220 aaccagttta cgaactggaa caattggagt tttgccagtc aaaaccggtc tctattaatg 2280 gaaagtatag aatggtcaga aggcccgata gcataggcaa agatagcaca acactactga 2340 gcatgctcaa tcaatccgac gtcaagagct acatgtcggc tgtcgctcag tgtggtttgg 2400 tgctcaacgc tggagtaccc atacttgaaa gtttctataa atgcctatat aggagctcgg 2460 ggtacaaaaa agtgagtgag gaatttatta aaaacgtcat atcgtatgga acagatgaga 2520 gactacaagg tagacgtacc tataatgaaa cacctatcac aaaccacagt agaatgtcct 2580 actgggaatc attcggagtt gaccctaaga tacagcaaat cgtcgagagg tactacgacg 2640 gtcttacggt aagtgcccaa ctccagagtg tgaaggtgac gactccacat ctgcaatcaa 2700 tactgctttc cataccggaa aaccactcac aaaacgaata ttaattacca aatcttagct 2760 gggtttggga tagggtttat agttagtata ccctgtacat tagctctcgc gtactttatt 2820 tacaataaag tttcagacac cactagagag gtggtgaatg aattcagtag gtcgtagagg 2880 acctagacgc gcaaatcaaa atggcacaag aaggaggcgc cgtagaacag ttcggccagt 2940 ggttgtggtc caacccaatc gagcaggacc cagacgacga aatggtcgac gcaagggaag 3000 aggaggggca aattttgtat ttagaccaac aggcgggact gaggtattcg tattctcagt 3060 tgacaacctt aaagccaact cctccggggc aatcaaattc ggccccagtc tatcgcaatg 3120 cccagcgctt tcagacggaa tactcaagtc ctaccatcgt tacaagatca caagtatccg 3180 agttgagttt aagtcacacg cgtccgccaa tacggcaggc gctatcttta ttgagctcga 3240 caccgcgtgc aagcaatcag ccctgggtag ctacattaat tccttcacca tcagcaagac 3300 cgcctccaag accttccggt cagaggcaat taatgggaag gaattccagg aatcaacgat 3360 agaccaattt tggatgctct acaaggccaa tggaactacc actgacacgg caggacaatt 3420 tatcattacg atgagtgtca gtttgatgac ggccaaatag gtagactcct caacaccgga 3480 accaaaacct gcaccggaac caacaccaac cccccagcca acgccggctc cacagcccac 3540 acctgaacca actcctgcac ctgtccccaa aagattcttc gagtatatcg gaactcctac 3600 cggtacaatc tcgactagag agaacactga cagtatatct gtcagcaagc tcggtggaca 3660 gtcgatgcag tacattgaga atgagaaatg tgaaacgaaa gtcatcgatt ccttttggag 3720 cactaacaac aacgtttctg cgcaagcagc tttcgtttat ccagtgccag agggatcata 3780 cagcgttaac atttcgtgcg aaggcttcca gtcagttgac cacatcggtg gcaacgagga 3840 cggctattgg attggtttaa ttgcctactc caattcgtct ggcgataatt ggggagttgg 3900 caattacaaa gggtgcagtt ttaagaattt cttggcaacc aacacttgga gaccaggcca 3960 caaagatctc aagttgactg attgccagtt cacagatgga caaatagttg aaagggacgc 4020 cgtgatgtct ttccacgtag aagcaacagg caaggatgcc agcttctacc tcatggctcc 4080 caaaacaatg aaaactgaca aatacaacta tgttgtctca tatggagggt acacaaacaa 4140 gcgaatggaa ttcggtacca tatctgtgac atgtgatgaa tccgatgttg aggcagaacg 4200 aataacaagg cacgctgaaa cgcccatacg ttctaaacat attcttgttt ctgagcggta 4260 tgcggaacca ttgcccacca tagtcaacca aggcttgtgt gatgtgaaaa ctcccgagca 4320 agaacaaaca ctggtggatg aagatgacag acaaactgtt tctactgaat ctgatatagc 4380 actcctggag tatgaggctg caacagctga gattccggat gctgaagagg acgttttgcc 4440 ctccaaggaa cagttgtctt caaaaccaat ggatacgtct ggcaatataa taccaaaacc 4500 caaggaacct gaagtacttg ggacatacca aggacagaac atttatcctg aagacgtacc 4560 tccaatggcg cggcagaaat tgagagaagc cgcgaatgcg ccttccacgc tactctatga 4620 aagaagaacc ccaaagaaga gtggcaactt tttatccaga cttgtagaag cgaataggtc 4680 ccctactact cccactgccc catccgtgtc aactacttca aacatgacaa gggagcagct 4740 ccgggagtac actaggatta gaaattccag cggaatcaca gcagcaaagg cgtacaaggc 4800 gcaattccag tgaagacaac accactagca caaatcggat cctgggaaac aggcagaact 4860 tcggttcgta agctcgggta ggccgtcaac ctaccgccgt atcgtattgt gtttggccga 4920 tggaggatct tcacgttatc gccgtttgta ttcttgcttt gactgtgctc tctggggtag 4980 gcgctgtttt gagttgctgc cgttggtgct gcagcaatcc ttttcctccc tccctctctt 5040 ctgttcaagc aaaagactct cgatctgtgc gagagacaat caaaaatatc gagggagctt 5100 cggctcagtg aggggattaa cgacccccag taatggccgg tcctggcgga cataaataac 5160 ccgctatagg acgaagtggt agccaccact gatcaaatgg caaacatgct tctgtgttgt 5220 acactgcccc ggagcctacc gggtcaacaa ggctatccca ccaacccgat gaaatgaggg 5280 tggagtgagc ggagtgggtg acttcgtgat gtacacccga tcgtcaggat tgaagacgtt 5340 aaaactcgac gacctggtac aagtcgttaa actgactcgg gtggatacac cacacccggc 5400 ccagcatgtt ggcataccca cgatacgaaa cgtgggtctc ttggagccac tacctgtgat 5460 gcaaggtagg gtatgagtct tagcaagctc tgagccagga gatggacata aaccatagca 5520 atccaacgtg taaccgcaat ggggcaaaca acaggtgaac cgtgtccacg ggcctggtta 5580 ccgaaaggaa agccagtatc caacacagca atgtgttggg ggtcacacct tcggggtact 5640 cttaacgctg acactcgaaa gagcagttcg gcaaccc 5677 //