ID X06728; SV 1; linear; genomic RNA; STD; VRL; 5845 BP. XX AC X06728; XX DT 10-AUG-1988 (Rel. 17, Created) DT 12-SEP-1993 (Rel. 36, Last updated, Version 6) XX DE Potexvirus white clover mosaic virus (WC1MV) RNA genome XX KW complete genome. XX OS White clover mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-5845 RX DOI; 10.1093/nar/16.1.291. RX PUBMED; 3340527. RA Forster R.L.S., Bevan M.W., Harbison S.A., Gardner R.C.; RT "The complete nucleotide sequence of the potexvirus white clover mosaic RT virus"; RL Nucleic Acids Res. 16(1):291-303(1988). XX DR MD5; 969de0ebafc43d3628845121228a988e. XX CC *source: p14D, p5-12; XX FH Key Location/Qualifiers FH FT source 1..5845 FT /organism="White clover mosaic virus" FT /mol_type="genomic RNA" FT /clone="overlapping cDNA pA8, pI43, pI90, p14B, pM1, FT pI106," FT /db_xref="taxon:12188" FT CDS 108..3992 FT /note="147K ORF (AA 1-1294)" FT /db_xref="GOA:P09498" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:P09498" FT /protein_id="CAA29904.1" FT /translation="MAKVRAALDRITDPSVKAVLNEEAYSHIRPVLRESLTNNPYAIAP FT DAADTLEKYGIATNPFAVKVHSHGAVKSIENTLLERVGFNLPKEPCIFLFLKRSKLRYL FT RRGPSNKDIFINLAIEPRDLQRYEEDTLVESWTRITTRYAYISDTLHFFTRKMLADLFF FT HNPALDVLYATLVLPPEALHKHPSIEPDLYTINYNFNGFQYIPGNHGGGSYSHEFKQLE FT WLKVGHLKSPELSLTFQMIESIGANHLFMITRGIKITPRVRTFTKDSYVLFPQIFHPRN FT LNPSKPFPKVKAMQLFTYVKSVKNPTERDIYAKIRQLIKTSELSDYHPDEIVHIVNYFV FT FISKLDSINSYSDILSLPIWSKALLPIKTKITQLWEKLTGARAFNQLLDALQWKTFTYS FT LEVVDFSTAPSQRDCFMEDERLETDTLEDEVSQNANNNKPTSLQNIEEAVKNNPDLPWA FT PWLLILQAHNADCTQKQYDPENNLILPIQEINTLPKHQHPDIPTDLLTLLTKLHREPTT FT VPLDNHRARAYGSDVKNLRIGALLKKQSKDWLASFALKTENIERQVLMSVIHGAGGSGK FT SHAIQTWMRSLNRRDRHVTIILPTTDLRNDWTTKVPNLEQANFKTFEKALCQPCGKIIV FT FDDYSKLPQGYIEAFLAINQNVILAILTGDSKQSFHHESNEDAYTATLEPSINTYQPFC FT RYYLNITHRNKPDLANKLGVYSCSSGTTSFTMSSQALKGMPILSPSIMKKTALGEMGQK FT SMTYAGCQGLTTKAVQILLDTNTPLCSSNVIYTALSRAVDHIHFINTGPNSTDFWEKLD FT STPYLKTFLDCVREERMNEIVAVEEPPAPVPAPTTHFPKVNPTTVIESYVHDLPEKHGR FT EIFSETHGHSNAIQTDNPVVQLFPHQQAKDETLYWATIEARLQCTSSEENLKEFHLKHD FT IGDILFLNYKQAMNLPQDPIPFNPDLWTLCKQEIENTYLKKSAAALVNAATRQSPDFDS FT HAIALFLKSQWVKKTEKIGCLKIKAGQTIAAFMQQTVMIYGTMARYMRKFRNQYCPRKI FT FVNCETTPADFNSFILDEWNFNRTCFSNDFTAFDQSQDGSILQFEVIKAKFHNIPEDII FT EGYIQIKTHAKIFLGTLSIMRLSGEGPTFDANTEANIAYTHTKFNIPCDAAQVYAGDDM FT SIDYVASVKPSFNMIEHLMKLKGKPVFNTQTQGDFAEFCGWTISPKGIIKKPEKMNMSI FT ELQKNINKFHEVKRSYALDHAFAYQLGDELHELYNESEAEHHQLATRSLILAGQATALD FT ILDYGLRDLK" FT CDS 3995..4705 FT /note="26K ORF (AA 1-236)" FT /db_xref="GOA:P09499" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:P09499" FT /protein_id="CAA29905.1" FT /translation="MDHIHLLLSAHGFTRTRLAKSKPIVVHAIAGSGKSTVIRKILSDL FT PTPKAYTLGKPDPYSLSNPTIKAFAQFKRGTLDILDEYGQLPLTDLDSSFEFIFTDPYQ FT APTDNLFEPHYTLETTYRFGPNTCNLLNQAFQSNITSLVTKDNISFGSPYLVDPVGTIL FT AFQPDTYLILCLHQASFFKVSDVIGYQWPTVTLYLACKISEIPEEERHLLFIGLTRHTE FT SLLILGPDAFDSSP" FT CDS 4683..5033 FT /note="13K ORF (AA 1-116)" FT /db_xref="GOA:P09500" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/Swiss-Prot:P09500" FT /protein_id="CAA29906.1" FT /translation="MPLTPPPNPQKTYQIAILALGLVLLAFVLISDHSPKVGDHLHNLP FT FGGEYKDGTKSIKYFQRPNQHSLSKTLAKSHNTTIFLLILGLIVTLHGLHYFNNNRRVS FT SSLHCVLCQNKH" FT CDS 4957..5157 FT /note="7K ORF (AA 1-66)" FT /db_xref="GOA:P09501" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/Swiss-Prot:P09501" FT /protein_id="CAA29907.1" FT /translation="MDFTTLIIIGVYLLVFIVYFAKINTSVCTISISGASIEISGCDNP FT TLFEILPKLRPFNHGLSLPSN" FT CDS 5164..5736 FT /note="coat protein ORF (AA 1-190)" FT /db_xref="GOA:P09502" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/Swiss-Prot:P09502" FT /protein_id="CAA29908.1" FT /translation="MATTTATTPPSLTDIRALKYTSSTVSVASPAEIEAITKTWAETFK FT IPNDVLPLACWDLARAFADVGASSKSELTGDSAALAGVSRKQLAQAIKIHCTIRQFCMY FT FANIVWNIMLDTKTPPASWSKLGYKEESKFAGFDFFDGVNHPAALMPADGLIRGPSDAE FT ILAHQTAKQVALHRDAKPTWHKRCQLC" FT polyA_site 5845..5845 FT /note="polyA site" XX SQ Sequence 5845 BP; 1769 A; 1620 C; 957 G; 1499 T; 0 other; gaaaacaaga cgagacgaac ctaaacagaa cgagccatcc gcagaaaaac taaaccactt 60 ccggttttct ttgaacataa ccaacacgta gtttgacaaa ggctgccatg gctaaagttc 120 gtgccgctct tgatagaatc actgatccat cggttaaagc tgtactcaac gaagaggcct 180 acagccacat ccgaccggtt cttcgtgaat ccctgactaa taatccatac gccatcgcac 240 ccgatgccgc cgacacgcta gagaaatatg gaattgctac taatccattc gcagtgaaag 300 tacactccca tggggcggtt aaaagtatcg aaaacacctt actcgaaaga gttgggttta 360 acttgccgaa agaaccatgc attttcctct tcctcaaaag aagtaaactg cgttacctca 420 gacgtggacc aagtaacaaa gacattttca ttaacctagc gatagagccc cgggacctcc 480 aaaggtatga agaagacact ctagttgaga gttggactcg tatcaccact aggtatgcat 540 atattagtga cactttacac ttcttcacta ggaagatgct ggctgaccta ttctttcaca 600 acccagctct agatgtatta tacgccaccc tagttcttcc cccagaagcc cttcacaaac 660 accctagcat agaacctgac ttatatacca ttaactacaa cttcaatggt ttccaataca 720 tcccaggtaa tcatggtggc ggttcttact cccatgaatt taaacaactg gaatggctca 780 aagttggaca tctcaaatcc ccagagctga gtctcacctt ccagatgatt gaatctattg 840 gtgctaacca cctcttcatg atcacccgtg gcattaaaat aacccccaga gttcgaacat 900 tcactaaaga ctcctatgtg ctcttccctc aaatctttca ccctcgaaac ctcaatcctt 960 caaaaccctt tccaaaagtt aaagcaatgc aactcttcac ttacgtgaaa tctgtcaaga 1020 atccaactga gagagacatt tatgctaaga tccgacagct gatcaagact tctgagctgt 1080 ctgattatca tccagatgaa atcgtacaca tagtgaatta ctttgttttc atctccaaat 1140 tggatagcat taattcttat tctgacatac tctctcttcc tatctggtcc aaagcattgc 1200 tgcccatcaa aaccaaaatc acacaacttt gggaaaagct caccggagca agagctttca 1260 accaacttct agatgcactt caatggaaaa ctttcacgta ttccttagaa gtagttgatt 1320 tttccacggc tccctctcag agagactgtt tcatggaaga tgagagactc gaaactgaca 1380 cacttgaaga tgaagtctca caaaatgcca ataacaataa accaacaagc ttgcaaaata 1440 ttgaagaggc cgtcaagaac aatccagacc tcccctgggc cccgtggtta ctcattctac 1500 aagctcacaa tgctgactgt acccaaaaac aatatgatcc tgaaaacaac ctcattctac 1560 ccatacagga gatcaacact ctccccaaac accaacaccc tgacatccca actgaccttc 1620 taacacttct aaccaaacta cacagagagc caaccactgt cccacttgac aaccacagag 1680 ctcgcgccta tggatctgat gtaaaaaatc tacgaatagg cgcacttctc aagaagcaaa 1740 gtaaagactg gttggctagc ttcgctctca aaactgagaa catcgaacgc caagttttaa 1800 tgtctgtcat ccatggcgct ggcgggtctg gcaaatctca tgctatccaa acttggatgc 1860 gttccttaaa ccggagagac cgtcacgtca ccataatctt acccacaaca gacttgcgca 1920 atgattggac taccaaagta cccaacctgg aacaagccaa tttcaaaact ttcgaaaaag 1980 cactctgcca accctgtgga aagatcatag tgtttgatga ctactctaaa cttccccaag 2040 gctacattga agcattcctt gccataaacc agaacgtcat tttagccatc ctcactggag 2100 attctaaaca gagtttccat catgaatcca atgaggatgc ttatacagcc actctggaac 2160 ccagtattaa cacctaccaa cccttttgcc gctattattt gaacatcact caccgaaaca 2220 aaccagactt agccaacaaa ttgggtgtct actcctgctc cagtggcact acatcattca 2280 ctatgtcatc acaagccctc aaaggcatgc ccattctttc tcccagcata atgaagaaaa 2340 ctgctcttgg tgaaatgggc cagaaaagca tgacatacgc tggatgccaa ggtctcacaa 2400 ctaaggcagt ccaaattctt ttggacacta acacaccttt gtgcagctcc aatgtcatat 2460 acacagccct cagtcgcgct gttgatcata ttcatttcat taacactgga cccaactcaa 2520 cagacttctg ggagaaactt gattccacac cttacctcaa aaccttctta gactgtgttc 2580 gagaggaaag aatgaatgaa attgtcgcag tagaagaacc acccgctcca gtacctgctc 2640 ctaccaccca cttcccaaaa gtcaacccta ccacagtgat tgaatcatat gtccatgatc 2700 tccctgaaaa acatggtaga gagatctttt ctgaaactca tggccactca aatgcaattc 2760 aaactgacaa ccctgtggtc caactctttc ctcatcagca ggctaaagat gaaactcttt 2820 actgggccac cattgaggcc agattacaat gtacttcatc agaagaaaac ctcaaagaat 2880 ttcatctcaa acatgacatt ggtgatattc tcttcctcaa ctacaaacaa gccatgaatc 2940 ttcctcaaga ccccatacct ttcaacccag acctctggac cctttgcaaa caggaaattg 3000 agaacacgta tctcaagaaa agtgctgctg cccttgttaa tgccgccact cgacaatcac 3060 ctgattttga ttcccatgca atagcgctct tcctgaaatc acagtgggtc aagaagaccg 3120 agaagattgg ttgccttaaa attaaagctg gccagaccat tgctgctttt atgcaacaaa 3180 ctgtcatgat ttatggtaca atggcccgct acatgagaaa attcaggaac caatattgcc 3240 caaggaaaat ctttgtgaat tgcgaaacca ctccagccga cttcaactca ttcatccttg 3300 acgagtggaa tttcaataga acttgctttt ccaatgactt cactgcattt gatcaaagtc 3360 aagacggttc catcctccaa tttgaagtca tcaaagctaa attccataac attccggagg 3420 acatcattga aggctacatt caaatcaaaa cacatgcaaa aattttcctg ggcactctca 3480 gcattatgag actctctgga gaaggcccca cctttgatgc caacactgaa gcaaacattg 3540 cctatacaca caccaaattc aacataccat gcgatgccgc acaagtgtat gctggcgatg 3600 atatgtccat cgattacgtt gcctcagtca agcccagctt caacatgatt gaacatttga 3660 tgaaactcaa aggtaaaccc gtcttcaaca cccaaaccca aggggacttc gctgaattct 3720 gtggctggac aatctcacca aaaggtatca tcaagaaacc tgagaaaatg aatatgagca 3780 ttgaacttca aaagaatatc aataaattcc atgaagttaa aagaagttat gctcttgacc 3840 atgccttcgc ataccaactt ggtgatgaat tgcatgaact gtacaatgag agtgaagcag 3900 agcatcacca acttgccaca aggtctctca ttctagctgg tcaagccaca gccctagaca 3960 ttcttgacta cgggttaaga gaccttaagt agcgatggat catattcacc tcctcctcag 4020 cgcccacggc tttacccgca ccagactcgc caaatccaaa cccattgtcg ttcatgctat 4080 agcaggctct ggaaagtcta ccgtgatcag gaaaattctc tcagacctac ccacacctaa 4140 agcttacacc ttaggcaaac cagaccccta ttctttatca aaccccacca tcaaagcctt 4200 cgcccaattc aaaagaggta cgctcgacat cttagacgaa tacggccaac tcccattgac 4260 cgatttagac tcatcttttg aattcatctt cacagaccct taccaagcac caactgacaa 4320 tctcttcgaa ccccactaca cactagaaac cacctataga tttggcccaa acacttgcaa 4380 ccttctcaat caagctttcc aatctaatat taccagcctt gtcaccaaag ataacatttc 4440 atttggttca ccctatttgg ttgacccagt tggtactatc cttgcctttc aaccagacac 4500 ctaccttatc ctttgcctac accaagcctc tttcttcaaa gtctcagacg tgattggtta 4560 ccagtggccc accgtaacgt tatacctagc ttgcaaaatt tctgaaattc ctgaagaaga 4620 acgtcatctc cttttcattg gtctcactag acacactgaa tctctcctca ttttagggcc 4680 agatgccttt gactcctccc cctaatcctc agaaaactta ccaaatagcc atacttgcat 4740 taggattagt acttctcgcc tttgttctca tttctgacca ttccccaaaa gttggtgatc 4800 atttacacaa tctcccattc ggaggtgaat acaaagacgg cactaaatct atcaagtatt 4860 tccaaagacc taaccaacat tctctttcca aaacccttgc caaatcacac aacactacca 4920 ttttcctgct catcttaggc ttgattgtca ccttgcatgg acttcactac tttaataata 4980 ataggcgtgt atcttctagt cttcattgtg tactttgcca aaataaacac tagtgtgtgt 5040 accattagta tatccggagc ttccattgaa atctcaggtt gcgacaaccc aacactcttc 5100 gaaatcctcc caaaactcag accctttaac cacgggttaa gtttaccatc taattgaaaa 5160 ccaatggcaa ccaccacagc aaccactcca ccatctttga ccgacatccg tgctctgaaa 5220 tacacctcct ccaccgtttc tgttgcttca cccgctgaga ttgaagctat caccaaaacc 5280 tgggctgaaa ccttcaaaat tccgaacgat gtcctgcctc tcgcttgttg ggatctggct 5340 cgtgctttcg ctgatgttgg cgcttcttct aagtctgaac ttactggtga ctctgctgct 5400 cttgcgggtg tttcaaggaa acaacttgcc caagccatca aaatccattg caccattcgc 5460 caattctgca tgtacttcgc caatatcgta tggaacatta tgctagacac caaaacacca 5520 ccagcatcct ggtctaagct aggctacaaa gaagagagca aattcgccgg cttcgacttc 5580 ttcgatggcg tcaaccatcc cgctgccctt atgcccgctg acggcctcat tcgtggtcct 5640 tccgacgcgg aaatcctagc acaccaaact gccaagcaag tagccctcca ccgtgacgca 5700 aaaccgacgt ggcacaaacg ttgtcaactc tgttgaaatc actaatggtc gctccgaccc 5760 tattgcccct cttattactt atccccagta attgccttat cacttcactt aatatgtgtg 5820 tgctttctgt ttaataaaat ttcag 5845 //