ID   X05040; SV 1; linear; genomic RNA; STD; VRL; 1782 BP.
XX
AC   X05040; D00094; N00094;
XX
DT   29-NOV-1987 (Rel. 14, Created)
DT   15-FEB-2002 (Rel. 70, Last updated, Version 4)
XX
DE   Sugarcane mosaic virus RNA for capsid/nuclear inclusion protein (3'
DE   terminal genome)
XX
KW   capsid protein; coat protein; nuclear inclusion protein.
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1782
RA   Gough K.H., Azad A., Hanna P.J., Shukla D.D.;
RT   "Nucleotide sequence of the capsid and nuclear inclusion protein genes from
RT   the Johnson grass strain of sugarcane mosaic virus RNA";
RL   J. Gen. Virol. 68:297-304(1987).
XX
DR   MD5; 63df98e14dc036918cb5ce927ae5b307.
XX
CC   Data kindly reviewed (20-OCT-1987) by GOUGH K.H.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1782
FT                   /organism="Sugarcane mosaic virus"
FT                   /strain="Johnson grass"
FT                   /mol_type="genomic RNA"
FT                   /clone="G7, E3"
FT                   /db_xref="taxon:12224"
FT   CDS             <1..1310
FT                   /codon_start=3
FT                   /product="capsid and nuclear inclusion protein (AA 436)"
FT                   /db_xref="GOA:Q84897"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q84897"
FT                   /protein_id="CAA28713.1"
FT                   /translation="RNREDLWFMSHRGMLKDGVYIPKVEPERVVAILEWDRSIEPEHRL
FT                   SAICAAIIESWGYEELTYQIRRFYQWVLEQEPYKELALQGKAPYLSETALRKLYLDESC
FT                   DQSELLRYYEEMYKNAMMSEDVVDVEHQSGNEDAGKQKSATPAANQTASGDGKPVQTTA
FT                   TADNKPSSDNTSNAQGTSQTKGGGESGGTNATATKKDKDVDVGSTGTFVIPKLKKVSPK
FT                   MRLPMVSNKAILNLDHLIQYKPDQRDISNARATHTQFQFWYNRVKKEYDVDDEQMRILM
FT                   NGLMVWCIENGTSPDINGYWTMVDGNNQSEFPLKPIVENAKPTLRQCMMHFSDAAEAYI
FT                   EMRNLDEPYMPRYGLLRNLNDKSLARYAFDFYEINSRTPNRAREAHAQMKAAAIRGSTN
FT                   HMFGLDGNVGESSENTERHTAADVSRNVHSYRGAKI"
FT   misc_feature    396..396
FT                   /note="put. N-term. of coat protein"
FT   polyA_site      1782..1782
FT                   /note="polyA site"
XX
SQ   Sequence 1782 BP; 579 A; 356 C; 440 G; 407 T; 0 other;
     caaggaatag agaagatcta tggtttatgt cgcatcgagg catgttgaag gatggagttt        60
     acataccgaa agtagaacca gagagggttg tcgccatttt ggaatgggat agaagcattg       120
     agccagaaca ccgtctatca gcaatatgtg cagcgatcat cgaatcatgg ggctacgagg       180
     aattaacata tcaaatccga cgattctacc aatgggtcct cgaacaagag ccatacaagg       240
     aactagcact acaaggcaaa gctccatact tgtcagagac agctctacgg aaattatatc       300
     ttgatgaatc ttgcgatcaa agtgaactac tacgttatta tgaagagatg tataagaacg       360
     caatgatgag tgaagatgtg gtggatgtag aacatcagtc aggcaatgag gatgctggga       420
     aacagaagag tgcaacaccc gctgcaaatc aaacagcaag tggggatggt aaaccagtac       480
     aaacgacagc gacagcagat aacaagccgt cttcagataa cacgtcaaac gctcaaggaa       540
     cttcacaaac caaaggaggt ggagaatcgg gtggaacgaa tgctacagca acaaagaagg       600
     ataaggatgt tgacgttgga tcaactggaa cttttgttat cccgaaatta aagaaggttt       660
     caccaaagat gcgtctaccc atggtgagca acaaagccat actcaatttg gaccatctaa       720
     tccaatacaa accagatcag agagacattt caaatgcacg agctacacac acacaattcc       780
     agttctggta caacagagtc aagaaagagt atgatgttga tgatgagcaa atgagaattt       840
     tgatgaatgg gttgatggtt tggtgtatag agaatggcac atcccctgat ataaatggtt       900
     attggaccat ggtggatggg aacaatcaat cagagtttcc actaaaacca atagtggaaa       960
     acgcaaaacc aacattacga cagtgcatga tgcattttag tgatgccgca gaagcataca      1020
     ttgaaatgag aaatttggat gagccgtaca tgccaagata cggtctcctt aggaatctaa      1080
     atgacaagag cctcgctcga tacgcatttg atttctatga gatcaattcg cgcacaccaa      1140
     atagggcgag agaggcacat gcacaaatga aggcagcagc aattagaggg tccacgaacc      1200
     acatgtttgg actcgacggg aatgttggag agagctctga gaacacagag cggcacacag      1260
     ctgcagatgt ctcacggaat gttcattcgt accgtggggc caaaatctaa ggaggaggaa      1320
     caaccgtcta tctgacgtta aaggatgact ggccaagtct gaaaattggc gagataccag      1380
     ttccgaatag tccgtacaga actagaggtg aacagagagc actataaacg tttagtaggg      1440
     atcgagggat gacacgtagg acctcaatga ccatgcttag cgctagcatt gtgtgaagct      1500
     ctaacactca ggtgttatct tccgggctgt ggtaatctcg taccccgaag tacctatggg      1560
     ccctcagcac cagacagtac tgggactatg gatcttttct tggcaatcac tagtattata      1620
     aatcgttctg caacggcacg agtggtgttt tacacctggg tgggattcta atgctgttat      1680
     acagttatgg ataacggccc gtgttgttcg tatttactag ttgcatcaaa ccatctgagc      1740
     ctcagagtga gcttctcacc acgtagtctc ttatggcgag at                         1782
//