Dbfetch
ID X04615; SV 1; circular; genomic DNA; STD; VRL; 3215 BP. XX AC X04615; XX DT 07-JUN-1987 (Rel. 12, Created) DT 17-NOV-2004 (Rel. 81, Last updated, Version 6) XX DE Hepatitis B virus genome, subtype ayr XX KW C gene; circular; core antigen; DNA polymerase; e antigen; genome; KW overlapping genes; P gene; S gene; surface antigen; X gene. XX OS Hepatitis B virus OC Viruses; Hepadnaviridae; Orthohepadnavirus. XX RN [1] RP 1-3215 RX PUBMED; 3783127. RA Okamoto H., Imai M., Shimozaki M., Hoshi Y., Iizuka H., Gotanda T., RA Tsuda F., Miyakawa Y., Mayumi M.; RT "Nucleotide Sequence of a Cloned Hepatitis B Virus Genome ,Subtype RT ayr:Comparison with Genomes of the Other Three Subtypes"; RL J. Gen. Virol. 67:2305-2314(1986). XX DR MD5; 1a9e5d598b3a8cc55c540376d3a90948. DR EuropePMC; PMC1187008; 11322169. DR EuropePMC; PMC1352377; 16401352. DR EuropePMC; PMC1395421; 16501106. DR EuropePMC; PMC1773865; 14570734. DR EuropePMC; PMC1774609; 15951551. DR EuropePMC; PMC1829020; 17182753. DR EuropePMC; PMC20452; 9576957. DR EuropePMC; PMC26492; 10677515. DR EuropePMC; PMC2729789; 19187787. DR EuropePMC; PMC3116493; 21569595. DR EuropePMC; PMC3122685; 21411575. DR EuropePMC; PMC3842526; 24348634. DR EuropePMC; PMC3970604; 23903967. DR EuropePMC; PMC400381; 15113905. DR EuropePMC; PMC4202270; 25028473. DR EuropePMC; PMC4539793; 26300928. DR EuropePMC; PMC4543549; 26288093. DR EuropePMC; PMC4971884; 24759937. DR EuropePMC; PMC5013995; 27031749. DR EuropePMC; PMC5308760; 27486882. DR EuropePMC; PMC5368141; 28332361. DR EuropePMC; PMC5370826; 27537600. DR EuropePMC; PMC5459465; 28582431. DR EuropePMC; PMC5656792; 28640739. DR EuropePMC; PMC5739625; 29285238. DR EuropePMC; PMC5788064; 29267855. DR EuropePMC; PMC5841821; 29474353. DR EuropePMC; PMC6160064; 30235666. DR EuropePMC; PMC6192773; 30132518. DR EuropePMC; PMC6354056; 30518174. DR EuropePMC; PMC6389180; 29486716. DR EuropePMC; PMC6542474; 25599103. DR GOA; P0C767. DR InterPro; IPR013195; Hepatitis_B_virus_capsid_N. DR InterPro; IPR036459; Viral_capsid_core_dom_sf_HBV. DR RFAM; RF01047; HBV_epsilon. DR UniProtKB/Swiss-Prot; P0C767; HBEAG_HBVCJ. XX FH Key Location/Qualifiers FH FT source 1..3215 FT /organism="Hepatitis B virus" FT /strain="ayr" FT /mol_type="genomic DNA" FT /db_xref="taxon:10407" FT CDS <1..1623 FT /note="P gene product (AA 304-843); circular molecule" FT /db_xref="GOA:Q69028" FT /db_xref="InterPro:IPR000201" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001462" FT /db_xref="InterPro:IPR037531" FT /db_xref="UniProtKB/Swiss-Prot:Q69028" FT /protein_id="CAA28286.1" FT /translation="LHNIPPSSARSQSEGPIFSCWWLQFRNSKPCSDYCLTHIVNLLED FT WGPCTEHGEHNIRIPRTPARVTGGVFLVDKNPHNTTESRLVVDFSQFSRGSTHVSWPKF FT AVPNLQSLTNLLSSNLSWLSLDVSAAFYHIPLHPAAMPHLLVGSSGLPRYVARLSSTSR FT NINYQHGTMQNLHDSCSRNLYVSLLLLYKTFGRKLHLYSHPIILGFRKIPMGVGLSPFL FT LAQFTSAICSVVRRAFPHCLAFSYMDDVVLGAKSVQHLESLFTSITNFLLSLGIHLNPN FT KTKRWGYSLNFMGYVIGSWGTLPQEHIVQKLKQCFRKLPVNRPIDWKVCQRIVGLLGFA FT APFTQCGYPALMPLYACIQSKQAFTFSPTYKAFLCKQYLNLYPVARQRSGLCQVFADAT FT PTGWGLAIGHRRMRGTFVAPLPIHTAELLAACFARSRSGAKLIGTDNSVVLSRKYTSFP FT WLLGCAANWILRGTSFVYVPSALNPADDPSRGRLGLYRPLLHLPFRPTTGRTSLYAVSP FT SVPSHLPDRVHFASPLHVAWRPP" FT CDS 155..835 FT /note="S gene product, put.surface antigen (AA 1-226)" FT /db_xref="GOA:Q76R62" FT /db_xref="InterPro:IPR000349" FT /db_xref="UniProtKB/Swiss-Prot:Q76R62" FT /protein_id="CAA28287.1" FT /translation="MESTTSGFLGPLLVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGA FT PTCPGQNSQSPTSNHSPTSCPPTCPGYRWMCLRRFIIFLFILLLCLIFLLVLLDYQGML FT PVCPLLPGTSTTSTGPCRTCTIPAQGTSMFPSCCCTKPSDGNCTCIPIPSSWAFARFLW FT EWASVRFSWLSLLVPFVQWFVGLSPTVWLSAIWMMWYWGPSLYNILSPFLPLLPIFFCL FT WVYI" FT CDS 1374..1838 FT /note="X gene product, (AA 1-154)" FT /db_xref="GOA:Q69027" FT /db_xref="InterPro:IPR000236" FT /db_xref="UniProtKB/Swiss-Prot:Q69027" FT /protein_id="CAA28288.1" FT /translation="MAARLCCQLDPARDVLCLRPVGAESRGRPVSGPFGPLPSPSSSAV FT PADHGAHLSLRGLPVCAFSSAGPCALRFTSARSMETTVNAHQVLPKVLHKRTLGLSAMS FT TTDLEAYFKDCLFKDWEELGEEIRLKVFVLGGCRHKLVCSPAPCNFFPSA" FT misc_feature 1804..1806 FT /note="translation initiation codon of pre-C region" FT CDS 1901..2452 FT /note="C gene product, core and e antigens, (AA 1-183)" FT /db_xref="GOA:Q76R61" FT /db_xref="InterPro:IPR002006" FT /db_xref="InterPro:IPR036459" FT /db_xref="PDB:5E00" FT /db_xref="UniProtKB/Swiss-Prot:Q76R61" FT /protein_id="CAA28289.1" FT /translation="MDIDPYKEFGASVELLSFLPSDFFPSIRDLLDTASALYREALESP FT EHCSPHHTALRQAILCWGELMNLATWVGSNLEDPASRELVVSYVNVNMGLKIRQLLWFH FT ISCLTFGRETVLEYLVSFGVWIRTPPAYRPPNAPILSTLPETTVVRRRGRSPRRRTPSP FT RRRRSQSPRRRRSQSRESQC" FT CDS 2307..>3215 FT /note="P gene product, put.DNA polymerase (AA 1-303)" FT /db_xref="GOA:Q69028" FT /db_xref="InterPro:IPR000201" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001462" FT /db_xref="InterPro:IPR037531" FT /db_xref="UniProtKB/Swiss-Prot:Q69028" FT /protein_id="CAA28290.1" FT /translation="MPLSYQHFRKLLLLDDEAGPLEEELPRLADEGLNRRVAEDLNLGN FT LNVSIPWTHKVGNFTGLYSSTVPVFNPDWKTPSFPHIHLQEDIINRCQQYVGPLTVNEK FT RRLKLIMPARFYPNLTKYLPLDKGIKPYYPEYAVNHYFKTRHYLHTLWKAGILYKRETT FT RSASFCGSPYSWEQELQHGRLVFQTSTRHGDESFCSQSSGILSRSPVGPCVRSQLKQSR FT LGLQPQQGSLARGKSGRSGSIWSRVHPTTRRPFGVEPSGSGHIDNTASSTSSCLHQSAV FT RKTAYSHLSTSKRQSSSGHAVE" FT misc_feature 2713..2715 FT /note="translation start codon of pre-S (O) region" FT misc_feature 2848..2850 FT /note="translation start codon of pre-S(1) region" FT misc_feature 3205..3207 FT /note="translation start codon of pre-S (2) region" XX SQ Sequence 3215 BP; 725 A; 874 C; 710 G; 906 T; 0 other; ctccacaaca ttccaccaag ctctgctaga tcccagagtg aggggcctat attttcctgc 60 tggtggctcc agttccggaa cagtaaaccc tgttccgact actgcctcac ccatatcgtc 120 aatcttctcg aggactgggg accctgcacc gaacatggag agcacaacat caggattcct 180 aggacccctg ctcgtgttac aggcggggtt tttcttgttg acaagaatcc tcacaatacc 240 acagagtcta gactcgtggt ggacttctct caattttcta gggggagcac ccacgtgtcc 300 tggccaaaat tcgcagtccc caacctccaa tcactcacca acctcttgtc ctccaacttg 360 tcctggctat cgctggatgt gtctgcggcg ttttatcata ttcctcttca tcctgctgct 420 atgcctcatc ttcttgttgg ttcttctgga ctaccaaggt atgttgcccg tttgtcctct 480 acttccagga acatcaacta ccagcacggg accatgcaga acctgcacga ttcctgctca 540 aggaacctct atgtttccct cttgttgctg tacaaaacct tcggacggaa actgcacttg 600 tattcccatc ccatcatcct gggctttcgc aagattccta tgggagtggg cctcagtccg 660 tttctcctgg ctcagtttac tagtgccatt tgttcagtgg ttcgtagggc tttcccccac 720 tgtttggctt tcagctatat ggatgatgtg gtattggggg ccaagtctgt acaacatctt 780 gagtcccttt ttacctctat taccaatttt cttttgtctt tgggtataca tttgaaccct 840 aataaaacca aacgttgggg ctactccctt aacttcatgg gatatgtaat tggaagttgg 900 ggtactttac cgcaggaaca tattgtacaa aaactcaagc aatgttttcg aaaattgcct 960 gtaaatagac ctattgattg gaaagtatgt caaagaattg tgggtctttt gggctttgct 1020 gcccctttta cacaatgtgg ctatcctgcc ttgatgcctt tatatgcatg tatacaatct 1080 aagcaggctt tcactttctc gccaacttac aaggcctttc tgtgtaaaca atatctaaac 1140 ctttaccccg ttgcccggca acggtcaggt ctctgccaag tgtttgctga cgcaaccccc 1200 acgggttggg gcttggccat aggccatcgg cgcatgcgtg gaacctttgt ggctcctctg 1260 ccgatccata ctgcggaact cctagcagct tgttttgctc gcagccggtc tggagcgaaa 1320 cttatcggaa ccgacaactc agttgtcctc tctcggaaat acacctcctt tccatggctg 1380 ctaggctgtg ctgccaactg gatcctgcgc gggacgtcct ttgtctacgt cccgtcggcg 1440 ctgaatcccg cggacgaccc gtctcggggc cgtttgggcc tctaccgtcc ccttcttcat 1500 ctgccgttcc ggccgaccac ggggcgcacc tctctttacg cggtctcccc gtctgtgcct 1560 tctcatctgc cggaccgtgt gcacttcgct tcacctctgc acgtagcatg gagaccaccg 1620 tgaacgccca ccaggtcttg cccaaggtct tacacaagag gactcttgga ctctcagcaa 1680 tgtcaacgac cgaccttgag gcatacttca aagactgttt gtttaaagac tgggaggagt 1740 tgggggagga gattaggtta aaggtctttg tactaggagg ctgtaggcat aaattggtct 1800 gttcaccagc accatgcaac tttttcccct ctgcctaatc atctcatgtt catgtcctac 1860 tgttcaagcc tccaagctgt gccttgggtg gctttggggc atggacattg acccgtataa 1920 agaatttgga gcttctgtgg agttactctc ttttttgcct tctgacttct ttccttctat 1980 tcgagatctc ctcgacaccg cctctgctct gtatcgggag gccttagagt ctccggaaca 2040 ttgttcacct caccatacag cactcaggca agctattctg tgttggggtg agttgatgaa 2100 tctggccacc tgggtgggaa gtaatttgga agacccagca tccagggaat tagtagtcag 2160 ctatgtcaat gttaatatgg gcctaaaaat tagacaacta ttgtggtttc acatttcctg 2220 ccttactttt ggaagagaaa ctgtccttga gtatttggtg tcttttggag tgtggattcg 2280 cactcctccc gcttacagac caccaaatgc ccctatctta tcaacacttc cggaaactac 2340 tgttgttaga cgacgaggca ggtcccctag aagaagaact ccctcgcctc gcagacgaag 2400 gtctcaatcg ccgcgtcgca gaagatctca atctcgggaa tctcaatgtt agtatccctt 2460 ggactcataa ggtgggaaac tttactgggc tttattcttc tactgtacct gtctttaatc 2520 ctgattggaa aactccctcc tttcctcaca ttcatttaca ggaggacatt attaatagat 2580 gtcaacaata tgtgggccct ctgacagtta atgaaaaaag gagattaaaa ttaattatgc 2640 ctgctaggtt ctatcctaac cttaccaaat atttgccctt ggacaaaggc attaaaccgt 2700 attatcctga atatgcagtt aatcattact tcaaaactag gcattattta catactctgt 2760 ggaaggctgg cattctatat aagagagaaa ctacacgcag cgcctcattt tgtgggtcac 2820 catattcttg ggaacaagag ctacagcatg ggaggttggt cttccaaacc tcgacaaggc 2880 atggggacga atctttctgt tcccaatcct ctgggattct ttcccgatca ccagttggac 2940 cctgcgttcg gagccaactc aaacaatcca gattgggact tcaaccccaa caaggatcac 3000 tggccagagg caaatcaggt aggagcggga gcatttggtc cagggttcac cccaccacac 3060 ggaggccttt tggggtggag ccctcaggct cagggcatat tgacaacact gccagcagca 3120 cctcctcctg cctccaccaa tcggcagtca ggaagacagc ctactcccat ctctccacct 3180 ctaagagaca gtcatcctca ggccatgcag tggaa 3215 //