ID X04197; SV 1; linear; genomic RNA; STD; VRL; 4612 BP. XX AC X04197; XX DT 19-SEP-1987 (Rel. 13, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 8) XX DE Beet necrotic yellow vein virus RNA-2 XX KW coat protein; subgenome; unidentified reading frame. XX OS Beet necrotic yellow vein virus OC Viruses; Riboviria; Benyviridae; Benyvirus. XX RN [1] RP 1-4612 RA Bouzoubaa S., Ziegler V., Beck D., Guilley H., Richards K., Jonard G.; RT "Nucleotide sequence of Beet Necrotic Yellow Vein Virus RNA-2"; RL J. Gen. Virol. 67:1689-1700(1986). XX DR MD5; 2bb392b2dffc09f375f40d1ea76ce09f. XX CC Partial readthrough of the termination codon at position 709-711 CC gives rise to 75K protein CC CC Data kindly reviewed (02-SEP-1987) by Bouzoubaa S. XX FH Key Location/Qualifiers FH FT source 1..4612 FT /organism="Beet necrotic yellow vein virus" FT /strain="isolate F13" FT /mol_type="genomic RNA" FT /clone="pBF14, pBC2" FT /db_xref="taxon:31721" FT repeat_region 1..8 FT /note="inverted repeat A" FT repeat_region 27..34 FT /note="inverted repeat A'" FT CDS 145..2220 FT /transl_except=(pos:709..711,aa:OTHER) FT /note="75K protein (aa 1-691)" FT /note="read-through stop-codon" FT /db_xref="GOA:Q9IR85" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/TrEMBL:Q9IR85" FT /protein_id="CAB43511.1" FT /translation="MSSEGRYMTWKDMSHNKFMTDRWARVSDVVSVIKQSHAMDLSKAA FT NLSIIKTALAGLGSGWSDSNPFVSPMTRFPQTLTMYGALVLYVNLSDPEFALIMTKVNT FT LTDSGLADNASANVRRDVVSGNKAESSGKTAGTNENSAYTLTVSLAGLAQALRLEELMW FT TRDKFEDRFKLPWTPVQGRTSPPGQXQLAAARVTAHIRAAKRALLYPGDSPEWVGWKHF FT YPPPPYDVYDVPPLDIINAKLAADDIGGLVTPTPASSHGLPFEVSEEVEQANRNSLWLT FT VGLLLAALAIGIGVTAYHRKKLQSRLRELKLLWGSTGGSGGGGGFGTELHTRATDTVSL FT GTTLSEHVAPAPSGLRHRPAATDSGPHEVLPFEVWVFDNLAVVYDSIGMSDLFYTVREF FT VGVFNGEFEGLIELLESPDDDDGVYTNAPRDTAIDAYESQENYDRIDVETVLIERRINL FT KKLLLEEAELERRERDMTMIADEEQRTLLHRLESSRVEATHVVTKAEADARAAVAMAAL FT ASKEANDYDSKMAFDRSCKEQELRLRELEVNSMPSKTERYVHTGIQGGAQLAGAMAVGA FT MLRRGASSSSQNVSGGANIGSRSQSLTRGRSASQPLSSVGGSTRGVNNNNISNTNLVRA FT GNSAAVSAGRSTNSGNSNFWSKLRVGEGWSKYSVERAATRAQRAIVPPAPPSAPAG" FT CDS 145..711 FT /note="coat protein; 21K (aa 1-188)" FT /db_xref="GOA:Q88620" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/TrEMBL:Q88620" FT /protein_id="CAA27791.1" FT /translation="MSSEGRYMTWKDMSHNKFMTDRWARVSDVVSVIKQSHAMDLSKAA FT NLSIIKTALAGLGSGWSDSNPFVSPMTRFPQTLTMYGALVLYVNLSDPEFALIMTKVNT FT LTDSGLADNASANVRRDVVSGNKAESSGKTAGTNENSAYTLTVSLAGLAQALRLEELMW FT TRDKFEDRFKLPWTPVQGRTSPPGQ" FT CDS <712..2220 FT /note="pot. 54K protein (aa 1-503)" FT /db_xref="GOA:Q88621" FT /db_xref="UniProtKB/TrEMBL:Q88621" FT /protein_id="CAA27792.1" FT /translation="QLAAARVTAHIRAAKRALLYPGDSPEWVGWKHFYPPPPYDVYDVP FT PLDIINAKLAADDIGGLVTPTPASSHGLPFEVSEEVEQANRNSLWLTVGLLLAALAIGI FT GVTAYHRKKLQSRLRELKLLWGSTGGSGGGGGFGTELHTRATDTVSLGTTLSEHVAPAP FT SGLRHRPAATDSGPHEVLPFEVWVFDNLAVVYDSIGMSDLFYTVREFVGVFNGEFEGLI FT ELLESPDDDDGVYTNAPRDTAIDAYESQENYDRIDVETVLIERRINLKKLLLEEAELER FT RERDMTMIADEEQRTLLHRLESSRVEATHVVTKAEADARAAVAMAALASKEANDYDSKM FT AFDRSCKEQELRLRELEVNSMPSKTERYVHTGIQGGAQLAGAMAVGAMLRRGASSSSQN FT VSGGANIGSRSQSLTRGRSASQPLSSVGGSTRGVNNNNISNTNLVRAGNSAAVSAGRST FT NSGNSNFWSKLRVGEGWSKYSVERAATRAQRAIVPPAPPSAPAG" FT CDS 2133..3287 FT /note="42K protein (aa 1-384)" FT /db_xref="GOA:Q89659" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q89659" FT /protein_id="CAA27793.1" FT /translation="MVQVQRRTGGDKGAKGNRASSAPVRSRRMTQDDWSRTHPDDIFSV FT IEKTLVEDGYKWNGVKPGHCDWGKLKESGAIDNFRGTLEGELGKNCDLTCNAAAVKLDT FT LQKVKTSSDWTARVGIVLGAPGVGKSTSIKNLLDKFGAKHKMVLCLPFSQLLEGVFAGR FT LDTFLVDDLFCRSVEYGKYNTMLVDEVTRVHMCEILVLAGHLGVKNVICFGDPAQGLNY FT KAGSAVNYNFPIIAECYASRRFGKATADLINSSNGGGKPVVGNNEVKDSWTFEELCGKI FT LDMSTVLVATRETQKFLLEDNIESILYSDAHGQTYDVVTIILEDEFDDAAICDPNVRAV FT LLTRARKGGMIKMGPNIAARFKNGDFNSRGVSKSCTGDTFCEDR" FT CDS 3287..3643 FT /note="pot. 13K protein (aa 1-117)" FT /db_xref="GOA:Q88622" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q88622" FT /protein_id="CAA27794.1" FT /translation="MSREITARPNKNVPIVVGVCVVAFFVLLAFMQQKHKTHSGGDYGV FT PTFSNGGIYRDGTRSADFNSNNHRAYGCGGSGGSVSSRVGQQLIVLAIVSVLIVSLLQR FT LRSPPEHICNGACG" FT CDS 3627..4025 FT /note="pot. 15K protein (aa 1-132)" FT /db_xref="GOA:Q89500" FT /db_xref="InterPro:IPR010470" FT /db_xref="UniProtKB/TrEMBL:Q89500" FT /protein_id="CAA27795.1" FT /translation="MVLVVKVDLSNIVLYIVAGCVVVSMLYSPFFSNDVKASSYAGAIF FT KGSGCIMDRNSFAQFGSCDIPKHVAESITKVATKEHDVDIMVKRGEVTVRVVTLTETIF FT IILSRLFGLAVFLFMICLMSIVWFWYHR" FT CDS 4043..4426 FT /note="pot. 14K protein (aa 1-127)" FT /db_xref="InterPro:IPR009884" FT /db_xref="UniProtKB/TrEMBL:Q88623" FT /protein_id="CAA27796.1" FT /translation="MGMVDSLCVFVGRVITEGSESVEGVERFSIKFSEWKLFTIAVFVE FT YRELGEKECSLKDAGRLHFNVSCVKCCQKLKCKKQNKNHSKHVQNGYLRKVRNFSILGV FT CGDCCESFTLADEKPHVIVDPEV" FT polyA_site 4612..4612 XX SQ Sequence 4612 BP; 1200 A; 760 C; 1209 G; 1443 T; 0 other; aaattctaac tattatctcc attgaataga atttcaccgt ctgtcggttc ttattttgtt 60 ctgggggcaa ttttattcag ggccctactt taaatatagg tgcgagtaat aagtagccgc 120 cgtccagaag aagatagtac caacatgtcg agtgaaggta gatatatgac atggaaggat 180 atgtcacata ataagtttat gaccgatcga tgggctcgtg tttcggacgt cgtgagtgtt 240 attaaacaat cgcatgctat ggacttgtcc aaggctgcga atctatctat aattaaaact 300 gctttggcag gattaggctc gggttggtct gacagtaatc cttttgtgtc tccgatgacc 360 cgttttccac agacactaac tatgtatggt gcacttgtgt tatatgttaa tctgtctgac 420 ccagaatttg cgttgataat gactaaggta aatactttaa ctgattcagg gttagcagat 480 aatgcatctg ctaatgtacg tagagatgtg gtgtctggaa ataaagctga atcatccggt 540 aaaactgctg gtactaatga gaactctgct tatacgctta ctgtcagtct tgctggttta 600 gctcaagctc ttaggcttga agaattaatg tggacccggg ataaatttga ggaccggttc 660 aaattaccat ggacacctgt tcaaggtaga accagtccac ccggacaata gcaattagct 720 gctgctcggg tgacggcaca cattcgagcg gcgaagcggg cactattata tcctggtgat 780 agtcccgagt gggttggttg gaaacatttc tatcctcctc caccatatga cgtgtatgat 840 gtgccaccgc tggatattat taatgccaaa ttggctgctg atgatattgg cggtcttgtt 900 actcccacac cggcatcctc acatggtctt ccttttgaag tttctgagga agttgagcag 960 gcaaatagaa atagcctatg gctaacagtt ggattactat tagctgcttt ggcaattggt 1020 attggtgtta ctgcttatca taggaagaag ctccaaagta gattacgtga gttaaaatta 1080 ctatggggct ctactggtgg gtctggtggt ggtggtggtt tcggcactga gctgcacacg 1140 cgtgctacag ataccgttag tttgggaacc actctttcag agcatgttgc tccagctccg 1200 tcaggattgc ggcaccgacc tgccgctact gatagcggac ctcacgaagt actgccgttt 1260 gaggtgtggg tgtttgataa tctagccgta gtgtatgatt cgattggtat gagtgattta 1320 ttttacactg ttagagagtt tgttggggtg tttaacggtg agtttgaagg gcttatagag 1380 ctgttagagt cacctgatga tgatgatggt gtgtatacaa atgctcctag agacactgct 1440 attgatgcct acgaatctca agaaaattac gatcgtattg atgttgagac tgttttgatt 1500 gagaggcgga taaacttgaa aaagttgctc cttgaagaag cagagctaga acgacgagag 1560 cgagatatga ctatgattgc tgatgaagaa caaagaacat tattgcatag gctggaaagt 1620 tctagggtcg aagcaactca tgtagttacc aaagctgaag ctgatgctcg ggcggctgtg 1680 gctatggctg ctcttgcgtc taaggaagct aatgactatg atagcaagat ggcttttgac 1740 aggtcctgta aagaacagga attacggttg cgcgaacttg aagtgaatag tatgccgagt 1800 aaaacagaaa ggtatgttca tactggtata caaggtggtg cgcaattggc tggagctatg 1860 gctgttggtg ctatgctgcg acgtggggct agttcttctt ctcaaaatgt ctctggtggt 1920 gctaatattg gttctcgttc gcagagtttg actcgtggtc gtagtgcatc acaacctttg 1980 tcatcggttg gtggttctac tcgtggggtt aataataata atattagtaa tactaatctt 2040 gttagggctg gtaatagtgc tgcagtttct gctggtagat ctactaatag tggtaatagt 2100 aatttttggt ccaaattgcg tgttggtgaa ggatggtcca agtacagcgt agaacgggcg 2160 gcgacaaggg cgcaaagggc aatcgtgcct ccagcgcccc cgtccgctcc cgccggatga 2220 ctcaggatga ctggtcacgt acccatcccg acgatatttt ctcagttatt gagaaaacac 2280 tagtagagga tgggtataaa tggaacgggg taaaacccgg acattgcgat tggggcaaat 2340 tgaaggaatc tggtgctatt gataatttta ggggtacatt agaaggcgag ttaggtaaaa 2400 attgtgattt aacttgtaat gctgctgccg tcaaactcga tacattgcaa aaggtgaaaa 2460 cgtcatcaga ttggactgcc agagttggta ttgttttggg tgctcctggt gttgggaaat 2520 ctacctcgat taaaaactta ttagacaaat ttggagcaaa acataaaatg gtgttgtgct 2580 taccttttag tcagttgtta gaaggggtat ttgctggtcg gttggacact tttctggttg 2640 acgatttgtt ctgtaggtcc gtggaatacg gaaaatataa caccatgctt gtggatgagg 2700 tcactcgtgt gcatatgtgt gagattttgg tgcttgccgg acatttaggt gttaagaacg 2760 tgatatgttt tggtgatccg gcgcaagggt tgaattataa ggccggttct gccgtgaact 2820 ataattttcc aattattgct gaatgttatg ctagtaggcg gttcggtaaa gcgactgccg 2880 atctcatcaa ttccagcaat ggtggtggta aacctgtagt tggtaataac gaagtaaagg 2940 atagttggac ttttgaagaa ctatgtggga agatattgga tatgtctact gttttggtag 3000 caacccgtga aacccaaaag tttctattag aagataatat tgagtctatt ctttactcgg 3060 acgctcacgg gcaaacatat gacgttgtca ctatcatttt ggaagacgag tttgatgatg 3120 ctgccatttg tgacccgaat gttagggctg tcttgttaac tagagctcgt aagggtggta 3180 tgatcaagat gggtcctaac attgctgcca ggttcaaaaa cggtgatttt aattcacgtg 3240 gagttagtaa gtcttgtacc ggagatactt tttgcgaaga tagataatgt ctagggaaat 3300 aaccgctcga cccaataaga atgtgcctat tgttgttggt gtttgtgttg tggctttctt 3360 tgtattgctg gcgttcatgc agcaaaaaca taagacacat tctgggggtg attacggagt 3420 cccaacattt tctaacggtg gtatatatag agacggtaca agatcagctg attttaatag 3480 taacaatcat cgtgcttacg ggtgcggtgg gtctgggggt agcgttagta gtcgagttgg 3540 gcagcaactt attgtgttag ctattgtttc tgtgttaata gtgtcactat tacaacgatt 3600 aaggtctcca ccagaacaca tttgtaatgg tgcttgtggt taaagtagat ttatctaata 3660 ttgtattgta catagttgcc ggttgtgttg ttgtcagtat gttgtactca ccgtttttca 3720 gcaacgatgt taaagcgtcc agctatgcgg gagcaatttt taaggggagc ggctgtatca 3780 tggacaggaa ttcgtttgct caatttggga gttgcgatat tccaaagcat gtagccgagt 3840 ccatcactaa ggttgccacc aaagagcacg atgttgacat aatggtaaaa aggggtgaag 3900 tgaccgttcg tgttgtgact ctcaccgaaa ctatttttat aatattatct agattgtttg 3960 gtttggcggt gtttttgttc atgatatgtt taatgtctat agtttggttt tggtatcata 4020 gataaattgt ggtagaacga gtatggggat ggtagatagt ttgtgcgtgt ttgttggtcg 4080 agtcataact gagggatctg aaagtgttga gggtgtggaa aggttttcca ttaagtttag 4140 tgagtggaaa ttgttcacca tcgcggtgtt tgttgaatat cgtgagttag gtgagaaaga 4200 gtgcagtttg aaggatgctg gtagattaca ctttaatgtg tcatgtgtga aatgctgtca 4260 aaaacttaaa tgcaagaaac aaaataaaaa tcatagtaaa cacgtccaaa atggatattt 4320 acgcaaggta cgtaattttt ccattttagg tgtttgcggt gattgttgtg agtcttttac 4380 actcgcggac gaaaaacctc atgttattgt cgatcctgag gtgtaacagg gtttattcaa 4440 gagactgtgt ttaatattaa taatcagggc catgccacag gcctcctatt gggttgttcc 4500 gaaggttgtt gtggtttata ttgcttattg atgagtgatt tgattaaggt tgcagtgtac 4560 tgactgggtg tgaattgtac cagtccatgt agggtctgtt ttcagtatat tg 4612 //