Dbfetch
ID X03955; SV 1; linear; genomic RNA; STD; VRL; 3389 BP. XX AC X03955; XX DT 18-NOV-1986 (Rel. 10, Created) DT 17-NOV-2004 (Rel. 81, Last updated, Version 5) XX DE Tobacco rattle virus (TRV) strain TCM RNA2 sequence XX KW coat protein. XX OS Pepper ringspot virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-3389 RX DOI; 10.1093/nar/14.11.4673. RX PUBMED; 3714489. RA Angenent G.C., Linthorst H.J.M., van Belkum A.F., Cornelissen B.J.C., RA Bol J.F.; RT "RNA 2 of tobacco rattle virus strain TCM encodes an unexpected gene"; RL Nucleic Acids Res. 14(11):4673-4682(1986). XX DR MD5; 02fe8d5b54f7f05f2330c141b352f644. DR RFAM; RF01101; TLS-PK6. XX CC The sequence of the 3'-terminal 1099 nucleotides (starting at CC position 2291) of RNAs 1 and 2 was found to be identical. CC CC Data kindly reviewed (08-AUG-1986) by J.F. Bol XX FH Key Location/Qualifiers FH FT source 1..3389 FT /organism="Pepper ringspot virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:31750" FT misc_feature 1..3389 FT /note="TCM RNA2" FT misc_feature 438..438 FT /note="5'-terminus of subgenomic RNA 4" FT CDS 547..1164 FT /note="coat protein (aa 1-205)" FT /db_xref="GOA:P05072" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/Swiss-Prot:P05072" FT /protein_id="CAA27584.1" FT /translation="MAGSYGETFDGKILDDLSGAWVEKHNWSDILRRLTKIKFALQADR FT DMIPGIVEDLSTEIPVDENTRFPSGKVYHLLTKEMLMAIEAIHAASSFKRRAEEKNNVN FT PRQRFEAESSSSQLPSGGLVVRPAAGSGDSSLGEDLFSNSKLDDASTAFHKSLATLKGS FT RPKAVVQRTFEKEYSLRWTAAAPVAAAGGTPPGGRSWTWNLV" FT misc_feature 1257..1257 FT /note="put. 5'-terminus of subgenomic RNA 6" FT CDS 1282..2049 FT /note="29.1 K protein (aa 1-255)" FT /db_xref="GOA:P05078" FT /db_xref="InterPro:IPR007935" FT /db_xref="UniProtKB/Swiss-Prot:P05078" FT /protein_id="CAA27585.1" FT /translation="MGNGDWSSKWPNDHLFIDDFGKLVWFDVLTDIVKISHFVSQVPTD FT LSPIPSSYISFIDGRIPMCINHLGWVYIRVKFESEEVFYQKFGEVDVSRFGESELPPDF FT EVTFSKVTTLVNKSLVRKSELLEKMNNELKQELTNKLDSLEKVNVQLKKELSQAQQSNF FT TELRDGLILNFSKVGGRIHRMVVRSIQNQLKLVSEINNDGDRWATMGATVILKEGAQYL FT GFVVVKNDGKIGVKFDLTRLNSLDNQTLLASVV" FT CDS <2292..2684 FT /note="28.8 K protein fragment" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/Swiss-Prot:P05074" FT /protein_id="CAA27586.1" FT /translation="ACDNCSVAQYKVEYSISTQENVLDVWKVGCISEGVPVCDGTYPFS FT IEVSLIWVATDSTRRLNVEELNSSDYIEGDFTDQEVFGEFMSLKQVEMKTIEAKYDGPY FT RPATTRPKSLVSSEDVKGASKKKNSS" FT misc_feature 2688..2688 FT /note="put. 5'-terminus of subgenomic RNA 5" FT CDS 2709..3134 FT /note="16 K protein (aa 1-141)" FT /db_xref="InterPro:IPR007968" FT /db_xref="UniProtKB/Swiss-Prot:P05076" FT /protein_id="CAA27587.1" FT /translation="MTCVLKGCVNEVTVLGHETCSIGHANKLRKQVADMVGVTRRCAEN FT NCGWFVCVIINDFTFDVYNCCGRSHLEKCRKRFEARNREIWKQVERIRGEKASATVKKS FT HKSKPSKKKFKERKDFGTPKRFLRDDVPLGIDQLFVF" XX SQ Sequence 3389 BP; 962 A; 559 C; 832 G; 1036 T; 0 other; ataaaacatt gcaccaatgg tgctgccctg gctggggtat gtctttgaac gcagtagaat 60 gtgctaattg acaagttgga gaacgcggta gaacgtactt atccgacaca gcctttatcc 120 ctttgttgag aggtttttct caactgcacc gaaattctgg atttagttgg tcgctagaag 180 actgaaggaa tgtaggtgta tttttagata gttaataggt atcttctcaa ataccataaa 240 catgagacgc atcgcttgcg aaagtagcat taaaagctaa accttactaa atgacaaatt 300 ttagtttggt ggttcaaaaa cgtcactcaa agtcaatttg agtgtgcgca gaacagaacg 360 atgtcacgtt cctgttcggg gtttcacact atcttaagag aaagtgttaa aatagtgaga 420 atattctcac tatgagcata attatactgg ttatcctctc gctgatagag actatcattc 480 ttaaaatcac tttgaaaggt agtcttgttg atacacaggt tgctttatca cttgcactac 540 ttacttatgg caggtagtta tggggaaacg ttcgatggaa aaattctcga cgatctctct 600 ggggcttggg ttgagaaaca taactggagc gacatcctcc gaaggttgac gaagatcaaa 660 tttgctctcc aggcagacag agatatgatc cctggaattg ttgaggatct gagtacggaa 720 ataccagttg atgaaaacac gaggtttcct agtgggaaag tgtatcacct tctgaccaag 780 gaaatgttga tggcgatcga agctatccat gcggcttcgt cgttcaaaag aagagccgag 840 gagaaaaata atgtcaatcc gagacagaga tttgaagccg aaagttcgtc ttcacagtta 900 ccatctggtg gtttagtagt tagacctgct gctgggagtg gggattcatc gttaggtgaa 960 gatttgtttt cgaatagtaa attagatgac gccagtacgg cctttcataa gagtttagct 1020 actcttaagg gaagtcgtcc aaaggcggtt gtccagcgca ctttcgaaaa agagtatagt 1080 ttgaggtgga cggctgctgc tccggtcgct gctgctggtg gaacaccacc aggtggaagg 1140 tcgtggacct ggaacctagt ttgaatacta gatttcgata atgacagcaa ttgtcatttt 1200 agaaacggtt ttgctacttg atttggttta atcctttgac atgggtcgca ggtggcatag 1260 taattgtgaa atttcttctt tatgggcaac ggagattggt cttcaaagtg gcctaacgat 1320 cacttgttca tagatgattt cggaaagttg gtttggttcg atgtactgac tgacatagtt 1380 aagatctctc atttcgtttc acaggtacca accgatttgt ctccaattcc gagctcctat 1440 attagcttca tcgatggtcg aattcccatg tgtatcaatc acctaggttg ggtgtatata 1500 cgtgttaaat ttgagtctga ggaagtattt tatcagaagt tcggtgaggt agatgttagt 1560 aggttcggcg agtcggaact tcctccggat ttcgaagtca ctttcagtaa ggtgactacg 1620 ctggtgaata agtccttggt gcgaaaaagc gagcttctcg aaaagatgaa caatgaactc 1680 aaacaggaat taactaacaa gcttgattcg ctggaaaagg taaatgttca gttaaagaag 1740 gaacttagtc aagcgcaaca aagtaatttc actgaattgc gcgacgggtt gatcttaaac 1800 ttttcaaaag ttggcgggag aatccatcgt atggttgtca gatccatcca aaatcagctt 1860 aagcttgttt cggaaatcaa taatgatggt gacaggtggg ctacaatggg agctacggta 1920 attctaaagg aaggagctca gtatttaggg tttgttgttg taaagaatga tgggaaaatc 1980 ggtgtcaaat tcgatttaac caggttaaat tctttggata accaaacttt gctggcgtct 2040 gtggtttaat atgttgtagg tttaaactcc ttttgagcgg ggcgtgaaag tcgtccggtg 2100 gatcgtacct tatcgatttc tgttgtagga agcagataaa ataattcctg tagctacgtc 2160 tcacgtaggg tggttgttac cataaacaat aatgtcgttg gttgcattta aaataattcc 2220 attgaccgat attctatcat gggaaacgtc tgcagggcgt tcttgataag cttaactccg 2280 cagttacatt agcttgcgat aattgttcag ttgcgcagta caaggttgaa tacagtattt 2340 ctacacaaga gaatgtactc gatgtctgga aggtgggttg tatctctgag ggcgttccgg 2400 tctgtgacgg cacataccct ttcagtattg aagtgtcgct catttgggtt gctactgatt 2460 cgactagacg tcttaatgtg gaagaactga acagttcaga ctacattgaa ggcgatttta 2520 ccgatcagga ggttttcggt gagttcatgt ctttgaaaca agttgagatg aagacgattg 2580 aggcgaagta tgatggtccg tacagaccag ctactactag accaaaatca ttggtgtcaa 2640 gtgaagatgt taagggagcg tctaaaaaga aaaactcgtc ttaatgcata aagaaattta 2700 ttgtcactat gacgtgtgta ctcaagggtt gtgtgaatga agtcactgtt cttggtcacg 2760 agacgtgtag tatcggtcat gctaacaagt tgcgaaagca agttgctgac atggttggtg 2820 tcacacgtag gtgtgcggaa aataattgtg gatggtttgt ctgtgttatt atcaatgatt 2880 ttacttttga tgtgtataat tgttgtggcc gtagtcacct tgaaaagtgt cgtaaacgct 2940 tcgaagcgag aaatcgggaa atctggaaac aggttgaacg aattcgaggt gaaaaggcgt 3000 ctgctacggt taaaaagtct cataaatcga aaccctctaa gaagaaattc aaggagagaa 3060 aagattttgg gacaccaaaa agatttttaa gagatgatgt tcctttggga attgatcaat 3120 tgtttgtttt ttgattttat tttaaattgt tatctgtttc tgtgtataga ctgtttgaga 3180 ttggtgtttg accaactcat tgtcttacca taggggaacg gactttgttt gtgttgttat 3240 tttatttgta ttttattaaa attctcaatg atctgaagaa gctttattgc taagagatta 3300 ttggggggtg agtaagtact tttaaagtga tgatggttac aaaggcaaaa ggggtaaaac 3360 ccctcgccta cgtaagcgtt attacgccc 3389 //