Dbfetch
ID X03869; SV 1; linear; mRNA; STD; PHG; 3466 BP. XX AC X03869; D00046; D10027; XX DT 18-NOV-1986 (Rel. 10, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 8) XX DE Group II RNA coliphage GA genome XX KW coat protein; complete genome; inverted repeat; lysis protein; KW maturation protein; protein binding site; replicase beta subunit; KW synthetase. XX OS Enterobacteria phage GA OC Viruses; Riboviria; Leviviridae; Levivirus. XX RN [1] RP 1-3466 RX PUBMED; 3711059. RA inokuchi Y., Takahashi R., Hirose T., Inayama S., Jacobson A.B., RA Hirashima A.; RT "The complete nucleotide sequence of the group II RNA coliphage GA"; RL J. Biochem. 99(4):1169-1180(1986). XX DR MD5; ddb82a1b833e47b59b53723900296a54. DR EuropePMC; PMC3430324; 22821966. XX CC Data kindly reviewed (10-JUL-1986) by Y. Inokuchi XX FH Key Location/Qualifiers FH FT source 1..3466 FT /organism="Enterobacteria phage GA" FT /mol_type="mRNA" FT /db_xref="taxon:12018" FT regulatory 127..131 FT /note="pot. rRNA binding site" FT /regulatory_class="ribosome_binding_site" FT CDS 136..1308 FT /transl_table=11 FT /note="put. maturation protein (aa 1-390)" FT /db_xref="GOA:P07394" FT /db_xref="InterPro:IPR005563" FT /db_xref="UniProtKB/Swiss-Prot:P07394" FT /protein_id="CAA27496.1" FT /translation="MFPKSNIDRNYKVKLISYDKKGKLVSDDSFEQVENYLFQNRSTTY FT KPGYIRRDFRRPTNFWNGYRCFNQPVGTFTRKLSDGGRQVADYGIVNPNKFTANSQHLG FT DNMVIYPGPFSINIDQRASVEVLNKLSQSNLNIGVAIAEAKMTASLLAKQSIALIRAYT FT AAKRGNWREVLSQLLISEHRFRAPAKDLGGRWLELQYGWLPLMSDLKAAYDLLTQTKLP FT AFMPLRVTRTVGGTHNYKVRNVESAGDTWSYRHRLSVNYRIWYFISDPRLAWASSLGLL FT NPLEIYWEKTPWSFVVDWFLPVGNLIEAMSNPLGLDIISGTKTWQLESKLNATLPASGW FT SGTAKLTAYAKAYDRSTFYSFPTPLPYVKSPLSGLHLANALALINQRLKR" FT CDS 1325..1717 FT /transl_table=11 FT /note="coat protein (aa 1-130)" FT /db_xref="GOA:P07234" FT /db_xref="InterPro:IPR002703" FT /db_xref="InterPro:IPR015954" FT /db_xref="PDB:1GAV" FT /db_xref="PDB:1UNA" FT /db_xref="UniProtKB/Swiss-Prot:P07234" FT /protein_id="CAA27497.1" FT /translation="MATLRSFVLVDNGGTGNVTVVPVSNANGVAEWLSNNSRSQAYRVT FT ASYRASGADKRKYAIKLEVPKIVTQVVNGVELPGSAWKAYASIDLTIPIFAATDDVTVI FT SKSLAGLFKVGNPIAEAISSQSGFYA" FT misc_feature 1683..1707 FT /note="pot. stem loop structure; pot. function in lysis FT gene control" FT repeat_region 1683..1693 FT /note="imp. inverted repeat a" FT repeat_region 1698..1707 FT /note="imp. inverted repeat a'" FT CDS 1717..1908 FT /transl_table=11 FT /note="put. lysis protein (aa 1-64)" FT /db_xref="GOA:P07233" FT /db_xref="InterPro:IPR022599" FT /db_xref="UniProtKB/Swiss-Prot:P07233" FT /protein_id="CAA27498.1" FT /translation="MGLKAKHKENLCSDSERSKRLYVWIALAIVLSDFTSIFSHWIWGL FT LILYLQTLMDLPTFVMNV" FT misc_feature 1733..1753 FT /note="pot. stem loop structure; pot. binding site coat FT protein" FT repeat_region 1733..1741 FT /note="imp. inverted repeat b" FT repeat_region 1746..1753 FT /note="imp. inverted repeat b'" FT CDS 1749..3347 FT /transl_table=11 FT /note="put. replicase beta-subunit (aa 1-532)" FT /db_xref="GOA:P07393" FT /db_xref="InterPro:IPR005093" FT /db_xref="InterPro:IPR007096" FT /db_xref="UniProtKB/Swiss-Prot:P07393" FT /protein_id="CAA27499.1" FT /translation="MFRFREIEKTLCMDRTRDCAVRFHVYLQSLDLGSSDPLSPDFDGL FT AYLRDECLTKHPSLGDSNSDARRKELAYAKLMDSDQRCKIQNSNGYDYSHIESGVLSGI FT LKTAQALVANLLTGFESHFLNDCSFSNGASQGFKLRDAAPFKKIAGQATVTAPAYDIAV FT AAVKTCAPWYAYMQETYGDETKWFRRVYGNGLFSVPKNNKIDRAACKEPDMNMYLQKGA FT GSFIRKRLRSVGIDLNDQTRNQELARLGSIDGSLATIDLSSASDSISDRLVWDLLPPHV FT YSYLARIRTSFTMIDGRLHKWGLFSTMGNGFTFELESMIFWALSKSIMLSMGVTGSLGI FT YGDDIIVPVECRPTLLKVLSAVNFLPNEEKTFTTGYFRESCGAHFFKDADMKPFYCKRP FT METLPDVMLLCNRIRGWQTVGGMSDPRLFPIWKEFADMIPPKFKGGCNLDRDTYLVSPD FT KPGVSLVRIAKVRSGFNHAFPYGHENGRYVHWLHMGSGEVLETISSARYRCKPNSEWRT FT QIPLFPQELEACVLS" XX SQ Sequence 3466 BP; 844 A; 838 C; 821 G; 963 T; 0 other; ggtggttagg aatttagggg gggttccctc acccttgaag gcgctaggaa tggtttgcat 60 aagcggctta attctgcagt cgttccacca tgccgttagg tttaggtgac ggtatgtcca 120 cataccggag gatctatgtt tccgaagtca aatatagaca gaaattacaa ggttaaactt 180 atatcttacg acaagaaagg gaagcttgtt tccgacgact cttttgagca agtcgaaaac 240 tatctctttc aaaatcgttc gactacgtat aaacctggtt acatccgtcg tgactttcga 300 agaccaacga acttctggaa cggctatcgc tgtttcaatc agccagttgg taccttcact 360 cggaaactct ctgatggtgg gagacaagtc gctgattatg gtatcgtaaa ccctaataag 420 tttactgcca atagccagca cttgggggat aacatggtaa tttaccctgg tcccttttct 480 ataaatattg atcagcgtgc ttccgttgaa gtcctcaaca agctctcgca atctaacctc 540 aatattgggg ttgcaattgc tgaagccaag atgactgctt cgttactcgc taaacaatct 600 atagctctca tcagagccta cactgctgca aagcgcggta attggcgaga ggtgctttct 660 cagctcctca tctccgaaca ccgtttcaga gctcctgcta aggatctcgg aggtcgatgg 720 ctcgaactgc agtacggctg gctacccctt atgagtgatt tgaaagctgc atatgatttg 780 cttacgcaaa ccaaattgcc tgctttcatg cccttaaggg ttacccgcac cgttggcgga 840 acgcacaatt acaaagtgcg caacgtcgaa tctgcagggg atacttggtc ctataggcac 900 cgcttgtcgg tgaattaccg aatatggtat ttcatttccg acccgcgcct cgcatgggct 960 agttccctcg ggcttcttaa ccctttagaa atctattggg agaagacgcc ctggtcgttc 1020 gttgttgact ggttcttacc tgtcggtaat cttatagaag ccatgagtaa tcctcttggc 1080 ctcgatatta tttccggcac gaagacttgg caactcgaat caaaacttaa tgcgacgctt 1140 ccggcttcgg gttggtctgg aactgcaaag ttgactgcat acgcgaaagc atatgacaga 1200 tcgactttct attcctttcc cactcctttg ccgtacgtga aatccccact tagtgggctt 1260 cacttagcga atgcattagc cttaatcaac caacgcctga aaaggtaatt acggagttag 1320 ccatatggca actttacgca gtttcgtact cgtcgataat ggcggtacgg ggaatgttac 1380 tgtcgttcct gttagcaatg ccaacggcgt cgctgagtgg ctttctaata actcgcgcag 1440 tcaggcttat cgcgtgactg ccagttatcg tgcgtcaggc gcggacaagc gcaaatatgc 1500 cattaaactt gaagtaccga aaatcgttac ccaagttgta aatggtgttg agctgcctgg 1560 ttccgcatgg aaggcttatg cctctatcga cctgaccatc cctatctttg ctgcaaccga 1620 cgacgtgact gttatttcca agtcgctcgc cggcctgttc aaagttggga accctatcgc 1680 tgaagctatc tcttcacaga gtggcttcta cgcgtaatgg gtctgaaagc aaaacataag 1740 gaaaacctat gttccgattc agagagatcg aaaagactct atgtatggat cgcactcgcg 1800 attgtgctgt ccgatttcac gtctatcttc agtcattgga tttggggtct tctgatcctc 1860 tatctccaga ctttgatgga cttgcctacc ttcgtgatga atgtctaact aaacatcctt 1920 cacttggaga cagtaattcg gacgcacgcc gtaaggaatt ggcatatgcc aaacttatgg 1980 atagtgatca aagatgcaaa atccaaaaca gtaacggata cgactactct catatcgaga 2040 gtggcgtact tagcggtata ctcaagaccg cccaggccct tgtggcaaac ttacttacgg 2100 gttttgaatc tcacttcctg aacgattgtt cattctccaa cggagcctca caagggttca 2160 agttgcggga tgcagcgccg tttaagaaga tcgctgggca agcaaccgtt acagctcctg 2220 cttatgacat tgccgtggcc gccgttaaaa cgtgcgcacc gtggtatgct tatatgcagg 2280 aaacgtatgg cgatgagacc aaatggtttc gtcgggtata cggcaacggt ttgttttctg 2340 ttccgaagaa caataaaata gatcgggctg cctgtaagga gcctgatatg aatatgtacc 2400 ttcagaaggg ggcgggatct tttataagaa aacgccttcg ctccgtcggt atagatctta 2460 acgatcagac gcgcaatcag gaattagccc gacttggcag cattgatggt tcgctcgcta 2520 ctattgatct tagtagcgct agcgattcca tctctgaccg tcttgtctgg gatctacttc 2580 cgccgcacgt ttattcatac ctcgctcgta tccgaacatc gttcactatg atcgatgggc 2640 gtttacataa gtggggtcta ttttctacca tgggtaatgg cttcacgttc gaactcgagt 2700 ccatgatctt ttgggcttta agcaagagca ttatgctgtc catgggtgtt actggctcat 2760 taggcatcta cggtgatgat ataatcgtcc ccgttgagtg tcgtccaact ctccttaagg 2820 tactatccgc tgtaaacttt cttcctaatg aggagaaaac atttacaacg ggttactttc 2880 gtgaaagttg tggtgcccac ttcttcaaag atgccgacat gaaacctttt tactgcaagc 2940 ggccaatgga aacccttccc gatgtcatgt tgctatgcaa caggataaga ggttggcaga 3000 ccgttggtgg aatgtcagat ccgcgactct ttcctatttg gaaggagttc gctgatatga 3060 tcccgccgaa gtttaagggt ggatgcaacc tggatcgcga tacttacctc gtctcacctg 3120 ataaacctgg tgtttcattg gttcgtattg ctaaggtacg ctctggtttt aaccatgcgt 3180 tcccgtacgg ccatgaaaat ggtcgctacg tccactggtt gcatatggga tcgggagaag 3240 ttcttgagac catttcctcc gccaggtata ggtgcaaacc taactcggaa tggagaacac 3300 agatccctct atttcctcag gaattagagg cctgcgttct ctcctgatag tatcaggacc 3360 tccccgtatg gggtgggtgt gaccgaaagg ccactatgga ggtgaaccct cccaccgccc 3420 aaaaggcggt tctcggtgac tagtttgctt ggctagtcac caccca 3466 //