ID X02986; SV 1; linear; genomic RNA; STD; VRL; 4003 BP. XX AC X02986; XX DT 28-JAN-1986 (Rel. 08, Created) DT 05-APR-2017 (Rel. 132, Last updated, Version 8) XX DE Carnation mottle virus (CarMV) complete genomic RNA sequence XX KW coat protein; genome. XX OS Carnation mottle virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Alphacarmovirus. XX RN [1] RP 1-4003 RA Morris T.J.; RT ; RL Submitted (28-JAN-1986) to the INSDC. RL Department of Plant Pathology, University of California, Berkeley, CA RL 94TZQ, USA. XX RN [2] RX DOI; 10.1093/nar/13.18.6663. RX PUBMED; 3840587. RA Guilley H., Carrington J.C., Balazs E., Jonard G., Richards K., RA Morris T.J.; RT "Nucleotide sequence and genome organization of carnation mottle virus RT RNA"; RL Nucleic Acids Res. 13(18):6663-6677(1985). XX DR MD5; bea406d015448891da475ddc213c2e39. DR EuropePMC; PMC1421387; 16524473. DR EuropePMC; PMC3113551; 21645857. DR EuropePMC; PMC4432326; 25977420. XX CC Parts of the sequence near the 5' end (bp 22-60, 237-332, 336-357) CC were characterized both with cloned cDNA and by direct sequence CC analysis of primer elongated cDNA. CC To produce the in vitro translation product p77-80 the CC UAG-stop codon (pos. 805-807) has to be read through. CC CC Data kindly reviewed (03-MAR-1986) by K. Richards XX FH Key Location/Qualifiers FH FT source 1..4003 FT /organism="Carnation mottle virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:11986" FT 5'UTR 1..69 FT CDS 70..2361 FT /transl_table=1 FT /transl_except=(pos:805..807,aa:OTHER) FT /product="RNA-dependent RNA polymerase" FT /note="putative readthrough stop-codon" FT /note="86 kDa protein" FT /db_xref="GOA:Q9WJE0" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q9WJE0" FT /protein_id="CAB38331.1" FT /translation="MGLPSLLVEGVIGCTLVGGLVAVGSAALAVRATIGVVEFNRECVR FT GARRIVSSGGRCLVVQSPYGNPNQGLIRGEDEEIDNVEESTPVELTPLIEVKAEVDGKE FT VVVSKKRVVNRHLRQRFVRSIAIEAKNHFGGDISPSKANYLSVSKFLTGKCKERHVVPA FT HTRDCVSAAMVLVFTPDVHEIRMMAGLASDAAYGIKIAMASILNRKGWCWRLMVNPLDR FT ARWWEMWCVVNGFDSNKPVTFPKXGGLFYLNGVETKIRRGGHPSVIEVDGQCPLKERKL FT YVQNAITTGYEYRVHNHSYANLRRGLLERVFYVERNKELVSCPQPEPGSFKEMGYLRRR FT FHRVCGNHTRISANDLVDCYQGRKRTIYENAAASLLDRAIERKDGDLKTFIKAEKFNVN FT LKSDPAPRVIQPRSPRYNVELGRYLKKYEHHAYKALDKIWGGPTVMKGYTTEEVAQHIW FT SAWNQFQTPVAIGFDMSRFDQHVSVAALEFEHSCYLACFEGDAHLANLLKMQLVNHGVG FT FASNGMLRYTKEGCRMSGDMNTALGNCLLACLITKHLMKIRSRLINNGDDCVLICERTD FT IDYVVSNLTTGWSRFGFNCIAEEPVYEMEKIRFCQMAPVFDGAGWLMVRDPLVSMSKDS FT HSLVHWNNETNAKQWLKSVGMCGLRIAGGVPVVQEFYQKYVETAGNVRENKNITEKSSS FT GFFMMADRAKRGYSAVSEVCRFSFYQAFGITPDQQIALEGEIRSLTINTNVGPQCEAAD FT SLWILNRKYQ" FT CDS 70..807 FT /transl_table=1 FT /product="replicase-associated protein" FT /note="27 kDa protein" FT /db_xref="GOA:P04518" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:P04518" FT /protein_id="CAA26726.1" FT /translation="MGLPSLLVEGVIGCTLVGGLVAVGSAALAVRATIGVVEFNRECVR FT GARRIVSSGGRCLVVQSPYGNPNQGLIRGEDEEIDNVEESTPVELTPLIEVKAEVDGKE FT VVVSKKRVVNRHLRQRFVRSIAIEAKNHFGGDISPSKANYLSVSKFLTGKCKERHVVPA FT HTRDCVSAAMVLVFTPDVHEIRMMAGLASDAAYGIKIAMASILNRKGWCWRLMVNPLDR FT ARWWEMWCVVNGFDSNKPVTFPK" FT CDS 2334..2519 FT /transl_table=1 FT /product="movement protein 1" FT /note="7 kDa protein" FT /db_xref="GOA:P11794" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/Swiss-Prot:P11794" FT /protein_id="CAA26727.1" FT /translation="MDIESEVPVVGKQMLAGNRGKQKTRRSVAKDAIRKPASDSTNGGN FT WVNVADKIEVHIHFNF" FT CDS 2425..2679 FT /product="movement protein 2" FT /note="9 kDa protein" FT /db_xref="GOA:Q98VK4" FT /db_xref="UniProtKB/TrEMBL:Q98VK4" FT /protein_id="SMB65965.1" FT /translation="MPSANLHLIVLTGVIGLMLLIRLRCTFTSTFSLPPLVTLNQIIAL FT SFCGLLLNSISRAERACYYNYSVDSSKQQHISISTPNGK" FT CDS 2669..3715 FT /transl_table=1 FT /product="capsid protein" FT /note="38 kDa protein" FT /db_xref="GOA:P04383" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR013669" FT /db_xref="InterPro:IPR029053" FT /db_xref="PDB:1OPO" FT /db_xref="UniProtKB/Swiss-Prot:P04383" FT /protein_id="CAA26728.1" FT /translation="MENKGEKIAMNPTVQTLAQKGDKLAVKLVTRGWASLSTNQKRRAE FT MLAGYTPAILAFTPRRPRMTNPPPRTSRNSPGQAGKSMTMSKTELLSTVKGTTGVIPSF FT EDWVVSPRNVAVFPQLSLLATNFNKYRITALTVKYSPACSFETNGRVALGFNDDASDTP FT PTTKVGFYDLGKHVETAAQTAKDLVIPVDGKTRFIRDSASDDAKLVDFGRIVLSTYGFD FT KADTVVGELFIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGK FT WCIIVRGTVEGGFTKPTLIGPGISGDVDYESARPIAVCELVTQMEGQILKITKTSAEQP FT LQWVVYRM" FT 3'UTR 3716..4003 XX SQ Sequence 4003 BP; 1127 A; 863 C; 1091 G; 922 T; 0 other; gggtaagctg gcgggcaaac ctacactcta tcttacatac attatatatt ctaaccatct 60 gctttcacta tgggattacc cagtctacta gtggaaggcg ttattggatg cactctagtt 120 ggtggtttgg tggctgttgg tagcgcagcg ctggccgttc gggcgaccat cggtgtagtg 180 gaattcaata gggagtgtgt gcgcggggcg agaaggatcg tatctagcgg agggaggtgc 240 ttagtagtcc aatcccctta tggcaatcct aaccaaggat tgataagggg tgaagacgaa 300 gaaattgata acgtggagga gtcaactccg gtagagttga ctccgttgat cgaggttaag 360 gcggaagtgg atgggaaaga ggtggttgtc tctaagaagc gcgtggtaaa caggcacttg 420 agacaacgat tcgttcgctc catagccatc gaagccaaaa accactttgg cggtgatatc 480 agcccaagca aggccaatta cctttctgtt tccaagtttc taacggggaa atgcaaggag 540 aggcatgttg tgcccgctca cacaagagac tgtgtgagcg ctgccatggt gctggtgttc 600 acccctgacg tccacgagat cagaatgatg gcaggattgg cgtctgacgc agcgtacgga 660 ataaagatcg cgatggcaag catactgaac aggaaagggt ggtgttggag gctaatggta 720 aatccattag atagggcaag atggtgggaa atgtggtgcg ttgtgaacgg gtttgactcc 780 aacaaacccg tcacctttcc caaatagggg ggcctgttct acctcaatgg tgtggagacg 840 aaaattcgtc gtggaggcca cccatcagtg attgaggtag acgggcaatg tcctctaaaa 900 gagagaaaac tctacgtaca gaatgccata accactggtt atgaatacag ggtccacaac 960 cattcgtacg caaacctcag acgagggctc cttgagagag ttttctatgt tgagcgcaac 1020 aaggagctag tcagctgtcc gcaacctgaa cccggcagct ttaaagagat gggatacctg 1080 cgacgcaggt tccatagagt gtgtggcaat catacccgga tctctgccaa tgatttggta 1140 gattgttatc agggcaggaa acgcacaatt tatgagaatg cagcagcgtc cctacttgat 1200 agagctatcg aaaggaagga tggcgatctc aagaccttta ttaaggcaga gaaattcaac 1260 gtaaatctga aaagtgatcc tgctcctcgg gttatacagc ctaggagccc tcgctacaat 1320 gtggagttgg gccggtactt aaagaagtat gaacaccatg cttacaaagc cttagacaag 1380 atctggggag gaccaacagt catgaaagga tacactacag aggaggtagc acagcacatt 1440 tggagcgcat ggaatcaatt ccagacacct gtagccatag gatttgacat gtcaagattc 1500 gatcagcatg tgtctgtagc cgcgctcgag ttcgaacatt catgctattt ggcctgtttt 1560 gaaggggacg ctcatctcgc caacttgctt aagatgcaac tggtgaatca tggcgtgggt 1620 tttgcgagca atggaatgtt gcgatacaca aaggaagggt gcagaatgag cggtgacatg 1680 aacactgcct tgggcaactg cttgttagct tgccttatca ccaaacactt aatgaaaatc 1740 aggagcagac tgatcaacaa tggggatgac tgtgtgctta tttgcgaaag aacagacatc 1800 gactacgtcg tgagtaattt aacgacggga tggagtcgat ttggattcaa ttgcatagca 1860 gaagagccag tgtacgaaat ggaaaagatc agattctgcc agatggcacc ggtgtttgat 1920 ggagcaggct ggctgatggt cagggaccct ttggtgagca tgagcaagga ttctcactcc 1980 ttagtgcatt ggaacaacga aacgaatgca aaacaatggc tgaagtcagt aggaatgtgc 2040 ggtctgcgga ttgccggggg ggttccagtt gtgcaagagt tctaccaaaa atacgttgaa 2100 acagccggaa atgtgagaga gaacaaaaat atcacagaga agagtagttc tgggttcttt 2160 atgatggcgg atcgcgctaa gcggggctat tctgctgtgt ctgaggtgtg ccgatttagc 2220 ttctaccagg cattcggcat cacgccagac cagcagatcg cgttggaggg tgagatcagg 2280 tctctcacta tcaacaccaa cgtggggccc cagtgtgaag cggcagattc actatggata 2340 ttgaatcgga agtaccagta gttggaaagc aaatgctcgc tgggaataga ggaaaacaaa 2400 agacacgtag atcggtggcc aaggatgcca tccgcaaacc tgcatctgat agtactaacg 2460 ggggtaattg ggttaatgtt gctgataaga ttgaggtgca cattcacttc aacttttagt 2520 ttgcccccac tggtaacttt aaatcagata atagcgttgt cattttgtgg tcttctatta 2580 aacagcatct ctcgggcaga aagagcttgc tattacaact actctgttga tagttctaaa 2640 caacaacaca tttcaataag tacaccaaat ggaaaataaa ggagaaaaga tcgcgatgaa 2700 tcccactgtg caaacattgg cgcagaaggg ggacaagtta gccgtgaagt tggtgacaag 2760 agggtgggcc tctctgagta cgaaccagaa gaggagagct gaaatgcttg ctggatacac 2820 tccagcgatc ctagccttca caccccgacg accacggatg acgaaccctc ctccaagaac 2880 cagtaggaat tcaccaggac aagctggaaa gtccatgacg atgagtaaga ccgaactatt 2940 aagcaccgtc aaaggtacca cgggtgttat cccaagcttt gaagactggg tcgtttcccc 3000 ccgaaacgta gccgtcttcc ctcaactctc gctgctggcg acgaacttca acaagtaccg 3060 cattactgcg ctcactgtga agtactcacc cgcgtgcagc ttcgagacca atgggagggt 3120 ggctctggga ttcaacgatg acgcttcgga cacaccacca accaccaagg ttggatttta 3180 cgatctgggc aaacatgtgg aaactgctgc acagacagct aaggatctag tgataccagt 3240 agacggcaaa acccggttca tcagggactc ggctagtgat gatgccaaac tagtcgattt 3300 tggacgaata gtcttgtcaa catacgggtt tgacaaggct gacactgtgg tgggcgaatt 3360 gtttatacag tacacgattg tgctgagtga cccaaccaag acggccaaaa tttcacaggc 3420 aagcaacgat aaggtgtcgg acggaccaac gtatgtggtc ccttcggtta atggcaacga 3480 gctacaacta agagtggtag ccgctgggaa atggtgcatt atagtgcggg gtacggttga 3540 gggaggcttc accaaaccca cacttattgg gccgggaatc agcggtgatg tggactatga 3600 aagtgccaga cctatcgccg tttgtgaatt ggtgacacaa atggagggcc agatattgaa 3660 aatcaccaag acctcagcag aacaaccact ccaatgggtt gtttatagga tgtgaatgca 3720 atagaaaagt ttgttagaca cacacggcgg gacgtgttgc cggagctgcc actccgccca 3780 agatggatcg atattaacca tctttggcaa cagcgtgcgt ggctaatcga acctagtaat 3840 tgcatagcat ccgactgtaa cctgttctct gctgaatacg agggtggcct cgtgatccca 3900 aaccataaaa gaaaccaact tgttggtgga agggcttgga agtaggatca accactgttt 3960 attaattagg ggtgagagta ttcactgtac tctttccccg ccc 4003 //