ID X02869; SV 1; circular; genomic DNA; STD; VRL; 2749 BP. XX AC X02869; XX DT 02-JUL-1986 (Rel. 09, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 13) XX DE Wheat dwarf virus - [Sweden] complete genome XX KW capsid protein; complete genome; composite protein; ORF 10146; ORF 14556; KW ORF 1742; ORF 29407; ORF 30156. XX OS Wheat dwarf virus - [Sweden] OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2749 RX PUBMED; 15938050. RA MacDowell S.W., Macdonald H., Hamilton W.D.O., Coutts R.H.A., Buck K.W.; RT "The nucleotide sequence of cloned wheat dwarf virus DNA"; RL EMBO J. 4(9):2173-2180(1985). XX DR MD5; 3c726c7565b2729eb79ed92fae573c14. XX FH Key Location/Qualifiers FH FT source 1..2749 FT /organism="Wheat dwarf virus - [Sweden]" FT /isolate="SE" FT /mol_type="genomic DNA" FT /db_xref="taxon:268789" FT stem_loop join(2740..2749,1..44) FT /note="putative" FT repeat_region join(2740..2749,1) FT /note="inverted repeat a" FT repeat_region 34..44 FT /note="inverted repeat a'" FT stem_loop 57..102 FT /note="putative" FT repeat_region 57..73 FT /note="inverted repeat b" FT regulatory 75..78 FT /note="putative, alternative signal for ORF 10146" FT /regulatory_class="TATA_box" FT regulatory 77..85 FT /note="potential recognition sequence for protein involved FT in replication" FT /regulatory_class="other" FT repeat_region 86..102 FT /note="inverted repeat b'" FT stem_loop 105..132 FT /note="putative" FT repeat_region 105..113 FT /note="inverted repeat c" FT repeat_region 124..132 FT /note="inverted repeat c'" FT regulatory complement(182..186) FT /note="ORF 14556, putative" FT /regulatory_class="polyA_signal_sequence" FT regulatory 225..228 FT /note="putative, signal for ORF 29407 (capsid protein) and FT alternative signal for ORF 10146" FT /regulatory_class="TATA_box" FT CDS 254..526 FT /product="hypothetical protein" FT /note="ORF 10146" FT /db_xref="GOA:P06849" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/Swiss-Prot:P06849" FT /protein_id="CAA26621.1" FT /translation="MEQAIAPPLPIRDYQYQTPSIPGSSDYAWRTFVFVTFGLLIAVGV FT AWLAYTLFLKDLILVCKAKKQRRTEEIGYGNTPARLNGDQQGLPR" FT CDS complement(357..752) FT /product="hypothetical protein" FT /note="ORF 14556" FT /protein_id="CAA26623.1" FT /translation="MPIIIGLTLSKTGNQIDPGCITHNNIGPVAIQPVVAEYAESWGLH FT RYYLIRLFTPLIHSPLPPSAGFTFFHLPLPLTSGVLVGHHLIWPVYSRNQFPRSSFASS FT PYTLKLNLSETECKQAKQRLRLLANQR" FT CDS 498..1280 FT /product="putative capsid protein" FT /note="ORF 29407" FT /db_xref="GOA:P06946" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/Swiss-Prot:P06946" FT /protein_id="CAA26622.1" FT /translation="MVTNKDSRGKGKRKMEEGESSGRWKGAVYKRRKQAYKVVPVKPPA FT LCVFRYNWLNSDRTNIVVGNTPRVDLITCFAQGKADNNRHTNQTVLYKFNIQGTCYMSD FT ASAPFIGPVRLYHWLVYDAEPKQAMPDATDIFTMPWNLLPSTWTVQRAWSHRFVVKRKW FT TVNLVTDGRKVGSKTVDQRYNWVVGKNIVDANKFFKGLRVTTEWMNTGDGKIGDIKKGA FT LYLISSTRGGVTGDSASTAFDVVCAYTHACYFKAIGIQ" FT misc_feature 540..540 FT /note="putative alternative translation start site for ORF FT 29407" FT regulatory 741..745 FT /note="ORF 10146, putative" FT /regulatory_class="polyA_signal_sequence" FT regulatory complement(769..772) FT /note="putative, signal for ORF 14556" FT /regulatory_class="TATA_box" FT regulatory 1284..1288 FT /note="ORF 29407, putative" FT /regulatory_class="polyA_signal_sequence" FT regulatory complement(1293..1297) FT /note="ORF 30156 and ORF 17292, putative" FT /regulatory_class="polyA_signal_sequence" FT CDS complement(1452..>1904) FT /product="putative composite protein" FT /note="ORF 1742" FT /db_xref="GOA:Q67622" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q67622" FT /protein_id="CAA26624.1" FT /translation="LRVDGRLFQESPGRHKSIYICGPTRTGKTSWARSLGTHNYYNSLV FT DFTTYDVNAKYNIIDDIPFKFTPNWKCFVGAQRDFTVNPKYGKRKVIRGGIPCIILVNP FT DEDWLKDMTPEQSDYMYSNTVVHYMYEGETFINYSFASGEDVTASQ" FT CDS complement(1799..2593) FT /product="putative composite protein" FT /note="ORF 30156" FT /db_xref="GOA:P06847" FT /db_xref="GOA:Q67622" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:P06847" FT /db_xref="UniProtKB/Swiss-Prot:Q67622" FT /protein_id="CAA26625.1" FT /translation="MASSSAPRFRVYSKYLFLTYPECTLEPQYALDSLRTLLNKYEPLY FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMDTSPFSIFHPNIQAAKDCNQVR FT DYITKEVDSDVNTAEWGTFVAVSTPGRKDRDADMKQIIESSSSREEFLSMVCNRFPFEW FT SIRLKDFEYTARHLFPDPVATYTPEFPTESLICHETIESWKNEHLYSVSLESYILCTST FT PADQAQSDLEWMDDYSRSHRGGISPSTSAGQPEQERLPGQGL" FT stem_loop 2398..2417 FT /note="putative" FT repeat_region 2398..2405 FT /note="inverted repeat d" FT repeat_region 2410..2417 FT /note="inverted repeat d'" FT regulatory complement(2718..2721) FT /note="putative, signal for ORF 30156 and ORF 17292" FT /regulatory_class="TATA_box" XX SQ Sequence 2749 BP; 708 A; 594 C; 735 G; 712 T; 0 other; ctagtgttcc cacggtagcg tagcgaatct tgtgggccct gttcggtgtg cggtcggggg 60 gcctccacgc gggttataat attaccccgc gtggtggccc ccgacgcgca ctcggctttt 120 cgtgagtgcg cggaggcttt tggaccacat cttttctgat cactttcgtg gaagatgttg 180 atttatcaca cttttgacgg ggaaatctgt gccatgcctt agcttataag gaagtgcgtg 240 gtagcccatc tcgatggagc aggcaatagc ccccccgctt cctatacggg actatcaata 300 ccagacccct tccattcccg gttcctccga ctacgcctgg cgaacatttg tgttcgttac 360 ctttggtttg ctaatagccg taggcgttgc ttggcttgct tacactctgt ttctgaaaga 420 tttaatttta gtgtgtaagg cgaagaagca aaggaggacc gaggaaattg gttacgggaa 480 tacaccggcc agattaaatg gtgaccaaca aggactcccg aggtaagggg aagcggaaga 540 tggaagaagg tgaatccagc ggaaggtgga agggggctgt gtataagcgg cgtaaacagg 600 cgtataaggt agtacctgtg aagcccccag ctctctgcgt attccgctac aactggttga 660 atagcgacag gaccaatatt gttgtgggta atacaccccg ggtcgatctg attacctgtt 720 ttgctcaggg taaggccgat aataatcggc atacaaatca gaccgtccta tacaaattta 780 acatacaggg tacctgctat atgtccgatg catcagctcc gttcatcggt ccagtccgcc 840 tctaccactg gttagtctat gatgcagagc cgaaacaggc tatgccagac gccactgaca 900 tctttacgat gccttggaat ctgctgccga gtacgtggac tgtgcaacgt gcttggtcgc 960 atcgattcgt ggtgaaaagg aagtggaccg tgaaccttgt tactgatgga cggaaggtcg 1020 ggtctaagac cgttgaccag cgctacaact gggtagtcgg caagaatatc gttgacgcaa 1080 ataagttctt caaaggtttg cgtgtcacga cggagtggat gaacacgggt gacggcaaga 1140 taggcgacat taagaaggga gcactgtatc ttattagcag tactcgtggt ggtgttactg 1200 gtgatagtgc ctctacggcg tttgatgttg tatgtgccta tacgcacgcg tgttatttca 1260 aagccatcgg cattcagtaa taaaataata ttttatttat ctcatgtcat tcgattacag 1320 aggctcggct acgagcaaag acaaaccaaa tataacaaac aacaaccctt acacaatgac 1380 atcggaaaac gaaatacaac accctgagat attacattta tagaaactgt acgccgtccg 1440 cgctaggaca gtcactgcga agcagtgacg tcttcgccgg aggcgaacga gtagttgatg 1500 aacgtctcgc cttcatacat gtagtgaaca acagtgttag agtacatgta atccgactgt 1560 tcgggagtca tatccttgag ccaatcttcg tctggattaa ctaaaatgat gcaaggtatt 1620 ccaccccgta tgacctttcg cttaccatat tttggattga ccgtgaagtc acgctgagcc 1680 ccgacgaagc acttccagtt gggtgtgaac ttgaatggaa tgtcgtcgat gatattatac 1740 ttggcgttga cgtcatatgt tgtgaaatca actagactgt tataataatt gtgtgtccct 1800 agagaccttg cccaggaagt ctttcctgtt ctggttggcc cgcagatgta gatggactta 1860 tgcctccccg gtgactcctg gaataatcgt ccatccactc taagtcagat tgcgcttgat 1920 ccgcaggagt ggaagtacaa aggatatagg attcgaggct tacggagtag agatgttcat 1980 ttttccagct ttcaatggtc tcatggcaaa tgagtgattc ggttggaaac tcaggtgtgt 2040 aagtggcaac tgggtcagga aatagatggc gtgccgtgta ctcgaagtct ttgagacgga 2100 tagaccattc aaacggaaaa cgattgcaaa ccatgctgag gaattcctcg cgagaggaac 2160 tagattcaat gatctgtttc atatccgcat cacggtcttt acgacctgga gttgaaacag 2220 ccacgaatgt tccccactca gctgtgttta catcggagtc aacctccttc gtgatgtaat 2280 cacgaacttg gttgcagtct ttggcagctt gtatatttgg atggaatatg gagaatggag 2340 atgtatccat acggaggttt aaggcattgg gattggtgat ggaagcacga agcttgttct 2400 gcacgagaac gtgcagatgt ggtgatccat cttcgtggag ctctctaaca gcagcgatgt 2460 agaggggctc atatttgttc aagagagtgc gaagtgaatc caaggcgtac tgtggctcaa 2520 gggtacattc aggatatgtt agaaagaggt acttggaata gacacggaac ctgggtgcag 2580 atgaagaggc catggtagtg aacagaagtc cggcaggtcc ttagcgaaaa aacggggtgt 2640 gccagaaaac tctatcctct accctgcgtg gaggtgtgaa ttctgcacac tgcaaatgca 2700 atgtgtccaa tgctttatat agggcaggtt ttggcgggag aacagggcc 2749 //