ID X02733; SV 1; linear; genomic RNA; STD; VRL; 3389 BP. XX AC X02733; XX DT 28-JAN-1986 (Rel. 08, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 3) XX DE Cucumber mosaic virus strain Q (Q-CMV) RNA 1 sequence XX KW coat protein. XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3389 RX DOI; 10.1111/j.1432-1033.1985.tb09025.x. RX PUBMED; 4018086. RA Rezaian M.A., Williams R.H.V., Symons R.H.; RT "Nucleotide sequence of cucumber mosaic virus RNA. 1. Presence of a RT sequence complementary to part of the viral satellite RNA and homologies RT with other viral RNAs"; RL Eur. J. Biochem. 150(2):331-339(1985). XX DR MD5; e8f5f97d1feac32b446891fcaa7f8fca. DR EuropePMC; PMC136033; 11884564. DR EuropePMC; PMC3582468; 22999234. DR RFAM; RF01084; TLS-PK3. XX CC Data kindly reviewed (26-NOV-1985) by R. Symons XX FH Key Location/Qualifiers FH FT source 1..3389 FT /organism="Cucumber mosaic virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:12305" FT misc_feature 1..97 FT /note="5' leader sequence" FT misc_RNA 1..1 FT /note="cap site" FT misc_feature 7..47 FT /note="put. hairpin structure (A)" FT repeat_region 7..23 FT /note="imp. inverted repeat A" FT misc_feature 22..33 FT /note="conserved sequence with pot. rgulatory function" FT repeat_region 30..47 FT /note="imp. inverted repeat A'" FT CDS 98..3073 FT /note="Q-CMV RNA 1 (aa 1-991)" FT /db_xref="GOA:P06011" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:P06011" FT /protein_id="CAA26515.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGL FT KVYIRNVLDVKDSEVIRTRYGGKYDLHLAQQELAPHGLAGALRLCETLDCLDFFPRSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHTERLMSMRKVILNDPQQFDGRQ FT PDFCTKSAAECKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GFIPELKCQWRKIKSAFSEEEDATCSAAKLNSSVFSRVRNGKTLIAFDFVEESTMSYVH FT DWDNIKSFMTDQTYSFNGMTYGIERCVIYAGVMTYKIVGVPGMCPPELIRHCIWFPSMK FT DYVGLKIPASDDLVKWKTVRILLSTLRETEEIAMRCYNDKKNWMDLFKIILGVLSSKSS FT TIVINGMSMQSGERIDLNDYHYIGFAILLHTKLKYEQLGKMYDMWNASFIWKWFASMSR FT PFRVFFSTVVKTLFPTLRPREEKEFLVKLSTFVTFNEECSFDGGKEWDVISSAAFVATQ FT AVADGTILAEEKAKKLADRLAVPVEEVTAIPEVSPTPVDQGTACGLETETSELDSLSAQ FT TRSPIARIAERATAMLEYSAYEKQLHDTTVSNLQRIWCMAGGDNKRNSLESNLKFVFDT FT YFSVDALVNVHFPTGRWMHPVPEGVVYSVGYNEKGLGPKLDSELYIVNGDCVISNSHDL FT FSITKSLLAPTGTISQVDGVAGCGKTTAIKSMFNPSTDIIVTANKKSAQDVRYALFKST FT DSKEACAFVRTADSILLNDCPTVSRVLVDEVVLLHFGQLCAVMSKLHAVRALCFGDSEQ FT IAFSSRDASFDMRFSKLIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTRTKYSDGA FT QSKVRKSVTSRAVASVSLVELDPTRFYITMTQADKASLITRAKELNLPKAFYTDRIKTV FT HESQGISEDHVTLVRLKSTKCDLFKKFSYCLVAVTRHKVTFRYEYCGVLGGDLIANCIP FT LV" FT misc_feature 3113..3180 FT /note="put. hairpin structure (B)" FT repeat_region 3113..3138 FT /note="imp. inverted repeat B" FT repeat_region 3151..3180 FT /note="imp. inverted repeat B'" FT misc_feature 3196..3260 FT /note="put. hairpin structure (C)" FT repeat_region 3196..3223 FT /note="imp. inverted repeat C" FT repeat_region 3229..3260 FT /note="imp. inverted repeat C'" XX SQ Sequence 3389 BP; 856 A; 734 C; 784 G; 1015 T; 0 other; gttttattta caagagcgta cggttcaacc cctgcctcct ctgtaaaact accctttgaa 60 ttcttcttct cgattttttt cttagtttaa aattcctatg gcaacgtcct cattcaacat 120 caatgaactg gtagcctccc acggcgataa aggactactt gcgacagccc tcgttgataa 180 gacagctcat gaacagctgg aggagcaact tcaacatcaa cgtagaggcc ttaaggtcta 240 catccgtaat gttttggatg taaaggactc cgaagtcatt cggactcggt atggtggtaa 300 gtacgacctc catctcgccc agcaggaatt agctccccat ggcctcgctg gtgccctccg 360 cttgtgtgaa actctcgatt gtctagactt tttccctcgt tcaggtctgc ggcaggacct 420 cgtcttagat ttcggaggaa gttgggtcac acactatctt cgcggacaca acgtacattg 480 ctgctcccca tgtttgggta ttcgtgacaa gatgcgtcac actgaaaggt tgatgagcat 540 gcgcaaggtc attttaaacg atccacaaca gtttgatggc cgccagccgg acttttgcac 600 taagtctgcg gctgaatgca aagttcaagc ccactttgct atttctatac acggaggata 660 tgatatgggc tttagaggtt tatgtgaggc aatgaacgct cacggaacta cgattttgaa 720 agggacgatg atgttcgacg gtgctatgat gtttgacgac caaggcttta ttcctgaact 780 taaatgtcag tggcgaaaaa ttaaatccgc cttttctgag gaggaggatg ccacttgttc 840 agcagctaaa ctcaattcta gtgttttttc acgcgtgcga aatgggaaaa ccttaatcgc 900 atttgacttc gttgaggaat ccacgatgtc ttatgttcac gattgggata atataaaatc 960 gtttatgaca gatcaaacgt actctttcaa tggtatgacc tatggaattg agcgttgtgt 1020 tatttacgct ggcgtgatga cttacaagat tgttggcgtg cctggtatgt gtccgcccga 1080 actcattcga cattgtatct ggttcccctc tatgaaggac tatgttggtc ttaagattcc 1140 cgcgtctgat gacttggtta aatggaaaac agtccgtatt ttactgtcaa cattacgtga 1200 gactgaagaa atagctatgc gttgttataa cgacaagaag aattggatgg atctattcaa 1260 gattattctc ggtgttttat catcgaagtc ctccacgatc gttatcaatg gtatgtctat 1320 gcaatccggt gaacgtattg atctcaatga ttatcattac atcggttttg ctattcttct 1380 ccacacgaaa ttaaaatacg aacaacttgg aaaaatgtac gatatgtgga atgcttcctt 1440 catttggaag tggtttgcgt ctatgtctag accattccgt gttttctttt ccactgttgt 1500 taagactttg tttccgactt tgagaccgcg cgaggaaaag gagtttttgg tcaaactttc 1560 cactttcgtc acctttaacg aggagtgctc ttttgacgga gggaaagaat gggacgtgat 1620 atcatcagcg gctttcgtag ccactcaggc tgttgcagat ggcactattc tggccgagga 1680 gaaagctaag aaattagctg atcgtctggc cgtgcctgtt gaagaagtta ctgctattcc 1740 tgaggtgtct cctacacctg ttgatcaggg cactgcttgt ggactggaaa cagaaacatc 1800 ggaactggat tctctgtctg cccaaacacg ttcccccatc gcacggatcg ctgaaagagc 1860 gaccgctatg cttgaatatt cagcttatga gaaacaattg cacgatacca ccgtttcaaa 1920 tcttcaacga atttggtgca tggcaggtgg cgacaacaag agaaactctt tagagagtaa 1980 tttgaaattt gtgtttgaca cttatttttc tgttgacgcc ctagtgaatg ttcactttcc 2040 tactgggaga tggatgcacc ctgtgcctga gggcgtggta tactctgttg gttataatga 2100 gaagggtctt ggtcctaaac ttgatagtga gttgtacata gttaatggtg attgtgtgat 2160 ttcgaacagt catgatttgt tttcaatcac taaatctttg ttagctccca ccggaaccat 2220 cagccaagtc gatggtgtag ctgggtgcgg gaaaaccact gctataaaat ccatgtttaa 2280 tccttccaca gatataattg tcacagccaa caagaaatct gctcaagatg tgcgttatgc 2340 gctgtttaaa tctactgact ccaaagaagc ttgtgctttt gttaggaccg ctgattccat 2400 attactcaat gattgcccta cggtgtctcg agtgcttgtg gatgaagttg ttttgttgca 2460 ctttggtcag ttgtgcgctg tcatgtcgaa acttcatgct gtcagagctt tgtgtttcgg 2520 agactccgaa cagatagcct tctcctctcg tgacgcttcg ttcgacatgc gtttctctaa 2580 gcttattccg gatgagacca gtgatgcgga cacaactttc cgtagcccac aagatgtagt 2640 accacttgtg cgtttgatgg ctacgaaggc tctaccgaaa gggacccgta cgaaatactc 2700 agatggtgcc caatctaaag tgaggaagtc tgttacttcg cgtgctgttg ctagtgtatc 2760 tctagttgaa ctggacccca ccagattcta tattacgatg acgcaagctg ataaagcctc 2820 actaatcact agagctaagg aactgaacct acccaaggca ttctacactg ataggataaa 2880 gactgtccat gaatctcaag gtatttcaga agatcatgtg accctggtta ggttgaagag 2940 tactaaatgt gacctgttca agaaattttc ttactgctta gttgcagtta ctcgacacaa 3000 ggtcaccttc cgctatgagt actgtggtgt gttaggtggg gacctaatcg ctaattgtat 3060 tccgttagtc tgatcgcgga aggtccgaag acgttaaact acgctctctt tattgcgagt 3120 gctgagttgg tagttttgct ttaaactatc tgaagtcgct aaatccagta ttggttgcga 3180 acgggttgtc catccagctt acggctaaaa tggtcagtat gccccaaagg catgccgaca 3240 tcctacaagg ttgtcgagct acccttgaaa tcatctccta gatttcttcg gaagggcttc 3300 gtgagaagct cgtgcacggt aatacactga tattaccaag agtgcgggta tcgcctgtgg 3360 ttttccacag gttctccata aggagacca 3389 //