ID X01678; SV 1; linear; unassigned RNA; STD; VRL; 2865 BP. XX AC X01678; K02707; XX DT 28-JAN-1986 (Rel. 08, Created) DT 29-OCT-1996 (Rel. 49, Last updated, Version 4) XX DE Brome mosaic virus (BMV) RNA2 XX KW . XX OS Brome mosaic virus OC Viruses; Riboviria; Bromoviridae; Bromovirus. XX RN [1] RP 1-2865 RX DOI; 10.1016/S0022-2836(84)80012-1. RX PUBMED; 6694215. RA Ahlquist P.G., Dasgupta R., Kaesberg P.; RT "Nucleotide sequence of the brome mosaic virus genome and its implications RT for viral replication"; RL J. Mol. Biol. 172(4):369-383(1984). XX DR MD5; f8720a3d88302cef9a7a4141b8a26e84. DR EuropePMC; PMC3318653; 22318148. DR RFAM; RF01084; TLS-PK3. DR RFAM; RF01113; BMV3_UPD-PK3. XX CC Data kindly reviewed (07-MAR-1986) by P. Ahlquist XX FH Key Location/Qualifiers FH FT source 1..2865 FT /organism="Brome mosaic virus" FT /mol_type="unassigned RNA" FT /db_xref="taxon:12302" FT misc_feature 1..42 FT /note="region of 96% homology to BMV RNA1" FT misc_RNA 1..1 FT /note="pot. cap site" FT CDS 104..2572 FT /note="pot. BMV RNA2 translation product (aa 1-822)" FT /db_xref="GOA:P03594" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR007610" FT /db_xref="InterPro:IPR018228" FT /db_xref="UniProtKB/Swiss-Prot:P03594" FT /protein_id="CAA25834.1" FT /translation="MSSKTWDDDFVRQVPSFQWIIDQSLEDEVEAASLQVQEPADGVAI FT DGSLASFKLAIAPLEIGGVFDPPFDRVRWGSICDTVQQMVQQFTDRPLIPQAEMARMLY FT LDIPGSFVLEDEIDDWYPEDTSDGYGVSFAADEDHASDLKLASDSSNCEIEEVRVTGDT FT PKELTLGDRYMGIDEEFQTTNTDYDITLQIMNPIEHRVSRVIDTHCHPDNPDISTGPIY FT MERVSLARTEATSHSILPTHAYFDDSYHQALVENGDYSMDFDRIRLKQSDVDWYRDPDK FT YFQPKMNIGSAQRRVGTQKEVLTALKKRNADVPEMGDAINMKDTAKAIAKRFRSTFLNV FT DGEDCLRASMDVMTKCLEYHKKWGKHMDLQGVNVAAETDLCRYQHMLKSDVKPVVTDTL FT HLERAVAATITFHSKGVTSNFSPFFTACFEKLSLALKSRFIVPIGKISSLELKNVRLNN FT RYFLEADLSKFDKSQGELHLEFQREILLALGFPAPLTNWWSDFHRDSYLSDPHAKVGMS FT VSFQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDCAIFSGDDSLIISKVKPVLDTDMFT FT SLFNMEIKVMDPSVPYVCSKFLVETEMGNLVSVPDPLREIQRLAKRKILRDEQMLRAHF FT VSFCDRMKFINQLDEKMITTLCHFVYLKYGKEKPWIFEEVRAALAAFSLYSENFLRFSD FT CYCTEGIRVYQMSDPVCKFKRTTEERKTDGDWFHNWKNPKFPGVLDKVYRTIGIYSSDC FT STKELPVKRIGRLHEALERESLKLANDRRTTQRLKKKVDDYATGRGGLTSVDALLVKSH FT CETFKPSDLR" FT repeat_region 2606..2640 FT /note="imperfect direct repeat 1" FT repeat_region 2642..2680 FT /note="imperfect direct repeat 1'" FT misc_feature 2763..2865 FT /note="193 bp region of common secondary structure of all FT BMV RNAs" XX SQ Sequence 2865 BP; 774 A; 603 C; 678 G; 810 T; 0 other; gtaaaccacg gaacgaggtt caatcccttg tcgacccacg gtttgcgcaa cacacatctg 60 accttgttgt tgttgtgtgc ttgttctttc tactatcacc aagatgtctt cgaaaacctg 120 ggatgatgat ttcgttcgcc aggtcccgtc tttccaatgg atcatagatc aatccttaga 180 agacgaggtg gaggctgcta gccttcaggt gcaggagccg gcagacggag ttgccattga 240 cggatctctc gcgagtttta aattagctat agcgcccttg gagataggag gggtattcga 300 tccccctttt gaccgagtgc gctggggctc tatttgcgac accgtccaac aaatggttca 360 acagttcacc gatagaccgc tgattcctca agctgaaatg gcacggatgt tatatcttga 420 cattccgggc tctttcgtgc tcgaagatga aattgatgac tggtatcccg aggatactag 480 tgatggttac ggtgtatcgt ttgccgccga tgaagatcat gcgagcgatc taaaactcgc 540 cagtgattcc tcgaactgtg aaattgagga agttcgtgtt actggagata cccccaagga 600 gctgaccctt ggagataggt acatgggcat tgatgaagag tttcagacta ctaatactga 660 ttacgacatc actcttcaaa tcatgaaccc tattgaacat agggtttcgc gtgttattga 720 tacacactgc catccagata accctgacat ctctactggg ccaatttata tggagagagt 780 cagccttgct agaacagaag cgaccagtca ttccatactg ccaacccatg cttatttcga 840 tgattcgtac catcaagccc ttgttgaaaa tggtgattat tccatggact ttgataggat 900 cagacttaag caaagtgatg tagactggta tagggacccc gataaatatt ttcaaccaaa 960 aatgaatatc gggagtgctc agcgaagagt tggtactcag aaagaagtct taaccgcact 1020 caaaaagcga aacgcggacg ttccagaaat gggagacgcg attaacatga aggacactgc 1080 gaaagctata gcaaagcgct ttcgtagcac attccttaat gttgacggtg aagactgtct 1140 gagagcttct atggatgtca tgactaaatg tcttgagtac cataagaagt ggggtaagca 1200 catggacttg caaggtgtga atgtggcagc agagactgat ttatgtcggt accagcatat 1260 gctgaagtct gacgtaaaac ctgttgtaac tgacaccctt cacttggaac gagcagtagc 1320 agctactata acatttcata gtaaaggtgt gactagtaat ttttcaccct ttttcactgc 1380 ttgtttcgag aagttatcac tggccctgaa atccaggttc attgtgccta tcggaaagat 1440 atcctctctg gagcttaaga atgtccgctt gaataacaga tactttcttg aagcggacct 1500 aagcaaattt gataaatctc agggtgagct gcacctagag tttcagagag agatactcct 1560 tgcgctgggc tttccagcgc cgctgacgaa ttggtggtct gattttcatc gcgattctta 1620 tttatcagac cctcatgcca aggtgggaat gtccgtttcc ttccaacgca gaactggtga 1680 cgcgtttaca tatttcggta atactcttgt cactatggct atgattgcat atgcctctga 1740 tctaagtgac tgtgactgtg caatattttc aggagatgat tctttaatca tctctaaagt 1800 taagccagtc ctggataccg atatgtttac gtctctcttc aatatggaga taaaagtcat 1860 ggaccctagt gtgccctacg tttgtagtaa gtttctcgtc gaaactgaaa tgggcaattt 1920 ggtgtctgta ccagatcctc tgagagagat ccagcgctta gctaagcgaa agattctgcg 1980 tgatgaacag atgctcagag cacatttcgt ttccttctgt gatcgaatga agtttattaa 2040 tcaacttgat gagaagatga ttacgacgct ctgtcatttt gtttatctga aatatgggaa 2100 agaaaaacct tggattttcg aggaggttag agctgctctt gcggcttttt ctttatactc 2160 cgagaatttc ctgaggttct ctgattgcta ctgtaccgaa ggcatcagag tttatcagat 2220 gagcgatcct gtatgtaagt tcaaacgcac cacggaagag cgtaaaactg atggtgactg 2280 gtttcacaac tggaagaatc caaagtttcc tggtgtgtta gacaaagtct acagaaccat 2340 tggaatttat tcctcggact gtagtactaa ggagctccct gtcaaacgga tcggacgttt 2400 acatgaggcc cttgagcgtg agtcactcaa attagctaat gatcgtagga ccacacaacg 2460 cttgaaaaag aaggtcgacg attacgctac cggtagagga ggcctaacgt cagttgatgc 2520 tttgctcgtg aagtcccatt gtgagacttt taagccctct gatctgagat gatcggttct 2580 atgatatatg aacctaagct gtgaacagcc ctttggttaa ggttaaaaac tcctggtcag 2640 gcagaccact ttggctaagt ttaaaagctt gttgaatcag tacaataact gatagtcgtg 2700 gttgacacgc agacctctta caagagtgtc taggtgcctt tgagagttac tctttgctct 2760 cttcggaaga acccttaggg gttcgtgcat gggcttgcat agcaagtctt agaatgcggg 2820 tgccgtacag tgttgaaaaa cactgtaaat ctctaaaaga gacca 2865 //