ID V00141; SV 1; linear; genomic DNA; STD; VRL; 8024 BP. XX AC V00141; J02048; XX DT 03-NOV-1982 (Rel. 02, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 8) XX DE Cauliflower mosaic virus genome. XX KW genome. XX OS Cauliflower mosaic virus OC Viruses; Ortervirales; Caulimoviridae; Caulimovirus. XX RN [1] RP 1-8024 RX DOI; 10.1016/0092-8674(80)90136-1. RX PUBMED; 7407912. RA Franck A., Guilley H., Jonard G., Richards K., Hirth L.; RT "Nucleotide sequence of cauliflower mosaic virus DNA"; RL Cell 21(1):285-294(1980). XX DR MD5; 30348fb274e0e86ede46056e3d5be17e. DR EPD; EP07015; CAMV_35MJ. DR EPD; EP07016; CAMV_35MN. DR EuropePMC; PMC1440423; 16571798. DR EuropePMC; PMC1569826; 16907967. DR EuropePMC; PMC16687; 10859345. DR EuropePMC; PMC2631584; 19055784. DR EuropePMC; PMC2836466; 19856176. DR EuropePMC; PMC3866725; 24471096. DR EuropePMC; PMC4227211; 25310647. DR EuropePMC; PMC5033183; 24495911. XX CC KST CAULIFLOWER XX FH Key Location/Qualifiers FH FT source 1..8024 FT /organism="Cauliflower mosaic virus" FT /mol_type="genomic DNA" FT /db_xref="taxon:10641" FT CDS 364..1347 FT /note="reading frame (I)" FT /db_xref="GOA:P03545" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/Swiss-Prot:P03545" FT /protein_id="CAA23456.1" FT /translation="MDLYPEENTQSEQSQNSENNMQIFKSENSDGFSSDLMISNDQLKN FT ISKTQLTLEKEKIFKMPNVLSQVMKKAFSRKNEILYCVSTKELSVDIHDATGKVYLPLI FT TKEEINKRLSSLKPEVRKTMSMVHLGAVKILLKAQFRNGIDTPIKIALIDDRINSRRDC FT LLGAAKGNLAYGKFMFTVYPKFGISLNTQRLNQTLSLIHDFENKNLMNKGDKVMTITYV FT VGYALTNSHHSIDYQSNATIELEDVFQEIGNVQQSEFCTIQNDECNWAIDIAQNKALLG FT AKTKTQIGNNLQIGNSASSSNTENELARVSQNIDLLKNKLKEICGE" FT CDS 1349..1828 FT /note="reading frame (II)" FT /db_xref="GOA:P03548" FT /db_xref="InterPro:IPR004917" FT /db_xref="UniProtKB/Swiss-Prot:P03548" FT /protein_id="CAA23457.1" FT /translation="MSITGQPHVYKKDTIIRLKPLSLNSNNRSYVFSSSKGNIQNIINH FT LNNLNEIVGRSLLGIWKINSYFGLSKDPSESKSKNPSVFNTAKTIFKSGGVDYSSQLKE FT IKSLLEAQNTRIKSLEKAIQSLENKIEPEPLTKEEVKELKESINSIKEGLKNIIG" FT misc_feature 1628..1628 FT /note="single-stranded gap (gap3)" FT CDS 1830..2219 FT /note="reading frame (III)" FT /db_xref="GOA:P03551" FT /db_xref="InterPro:IPR004986" FT /db_xref="PDB:3F6N" FT /db_xref="PDB:3K4T" FT /db_xref="UniProtKB/Swiss-Prot:P03551" FT /protein_id="CAA23458.1" FT /translation="MANLNQIQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLETV FT AAKIVNDLTKLINDCPCNKEILEALGTQPKEQLIEQPKEKGKGLNLGKYSYPNYGVGNE FT ELGSSGNPKALTWPFKAPAGWPNQF" FT CDS 2201..3670 FT /note="reading frame (IV)" FT /db_xref="GOA:P03542" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001988" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/Swiss-Prot:P03542" FT /protein_id="CAA23459.1" FT /translation="MAESILDRTINRFWYNLGEDCLSESQFDLMIRLMEESLDGDQIID FT LTSLPSDNLQVEQVMTTTEDSISEEESEFLLAIGETSEEESDSGEEPEFEQVRMDRTGG FT TEIPKEEDGEGPSRYNERKRKTPEDRYFPTQPKTIPGQKQTSMGMLNIDCQTNRRTLID FT DWAAEIGLIVKTNREDYLDPETILLLMEHKTSGIAKELIRNTRWNRTTGDIIEQVIDAM FT YTMFLGLNYSDNKVAEKIDEQEKAKIRMTKLQLCDICYLEEFTCDYEKNMYKTELADFP FT GYINQYLSKIPIIGEKALTRFRHEANGTSIYSLGFAAKIVKEELSKICDLSKKQKKLKK FT FNKKCCSIGEASTEYGCKKTSTKKYHKKRYKKKYKAYKPYKKKKKFRSGKYFKPKEKKG FT SKQKYCPKGKKDCRCWICNIEGHYANECPNRQSSEKAHILQQAEKLGLQPIEEPYEGVQ FT EVFILEYKEEEEETSTEESDGSSTSEDSDSD" FT CDS 3633..5672 FT /note="reading frame (V)" FT /db_xref="GOA:P03554" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR000588" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/Swiss-Prot:P03554" FT /protein_id="CAA23460.1" FT /translation="MDHLLLKTQTQTEQVMNVTNPNSIYIKGRLYFKGYKKIELHCFVD FT TGASLCIASKFVIPEEHWVNAERPIMVKIADGSSITISKVCKDIDLIIAGEIFRIPTVY FT QQESGIDFIIGNNFCQLYEPFIQFTDRVIFTKNKSYPVHIAKLTRAVRVGTEGFLESMK FT KRSKTQQPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKIEELLEKVCSE FT NPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSP FT HMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFD FT CKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCC FT VYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHK FT PQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWRWT FT KEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELIC FT RYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKG FT DSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREFNKVNS" FT misc_feature 4210..4210 FT /note="single-stranded gap (gap2)" FT CDS 5776..7338 FT /note="reading frame (VI)" FT /db_xref="GOA:P03559" FT /db_xref="InterPro:IPR009027" FT /db_xref="InterPro:IPR011320" FT /db_xref="InterPro:IPR037056" FT /db_xref="UniProtKB/Swiss-Prot:P03559" FT /protein_id="CAA23461.1" FT /translation="MENIEKLLMQEKILMLELDLVRAKISLARANGSSQQGDLSLHRET FT PEKEEAVHSALATFTPSQVKAIPEQTAPGKESTNPLMANILPKDMNSVQTEIRPVKPSD FT FLRPHQGIPIPPKPEPSSSVAPLRDESGIQHPHTNYYVVYNGPHAGIYDDWGCTKAATN FT GVPGVAHKKFATITEARAAADAYTTSQQTDRLNFIPKGEAQLKPKSFAKALTSPPKQKA FT HWLMLGTKKPSSDPAPKEISFAPEITMDDFLYLYDLVRKFDGEGDDTMFTTDNEKISLF FT NFRKNANPQMVREAYAAGLIKTIYPSNNLQEIKYLPKKVKDAVKRFRTNCIKNTEKDIF FT LKIRSTIPVWTIQGLLHKPRQVIEIGVSKKVVPTESKAMESKIQIEDLTELAVKTGEQF FT IQSLLRLNDKKKIFVNMVEHDTLVYSKNIKDTVSEDQRAIETFQQRVISGNLLGFHCPA FT ICHFIVKIVEKEGGSYKCHHCDKGKAIVEDASADSGPKDGPPPTRSIVEKEDVPTTSSK FT QVD" FT modified_base complement(6658..6658) FT /mod_base=OTHER FT /note="modified D-C residue" FT misc_feature complement(8024..8024) FT /note="single-stranded gap (gap1)" XX SQ Sequence 8024 BP; 2946 A; 1649 C; 1558 G; 1871 T; 0 other; ggtatcagag ccatgaatcg gtttaagacc aaaactcaag agggtaaaac ctcaccaaaa 60 tacgaaagag ttcttaactc taaaaataaa agatctttca agatcaaaca tagttccctc 120 acaccggtga ccgacaggat taccaccgta aggtttcaga acaacatcga aagcgtttac 180 gccaacttcg actctcaact caagtcgtcg tacgatggta gatctaaaaa gatcaagact 240 ctaagcctta aaaatcttag atgttacgaa gccttcctca ggaagtacct tctggaacaa 300 taaatctctc tgagaatagt actctattga gtatccacag gaaaaataac cttctgtgtt 360 gagatggatt tgtatccaga agaaaatacc caaagcgagc aatcgcagaa ttctgaaaat 420 aatatgcaaa tatttaaatc agaaaattcg gatggattct cctccgatct aatgatctca 480 aacgatcaat taaaaaatat ctctaaaacc caattaacct tggagaaaga aaagatattt 540 aaaatgccta acgttttatc tcaagttatg aaaaaagcgt ttagcaggaa aaacgagatt 600 ctctactgcg tctcgacaaa agaattatca gtggacattc acgatgccac aggtaaggta 660 tatcttccct taatcactaa ggaagagata aataaaagac tttccagctt aaaacctgaa 720 gtcagaaaga ccatgtccat ggttcatctt ggagcggtca aaatattgct taaagctcaa 780 tttcgaaatg ggattgatac cccaatcaaa attgctttaa tcgatgatag aatcaattct 840 agaagagatt gtcttcttgg tgcagccaaa ggtaatctag catacggtaa gtttatgttt 900 actgtatacc ctaagtttgg aataagcctt aacacccaaa gacttaacca aaccctaagc 960 cttattcatg attttgaaaa taaaaatctt atgaataaag gtgataaagt tatgaccata 1020 acctatgtcg taggatatgc attaactaat agtcatcata gcatagatta tcaatcaaat 1080 gctacaattg aactagaaga cgtatttcaa gaaattggaa atgtccagca atctgagttc 1140 tgtacaatac agaatgatga atgcaattgg gccattgata tagcccaaaa caaagcctta 1200 ttaggagcta aaaccaagac tcaaattggt aataaccttc aaataggtaa cagtgcttca 1260 tcctctaata ctgaaaatga attagctagg gtaagccaga acatagatct tttaaagaat 1320 aaattaaaag aaatctgtgg agaataatat gagcattacg ggacaaccgc atgtttataa 1380 aaaagatact attattagac taaaaccatt gtctcttaat agtaataata gaagttatgt 1440 ttttagttcc tcaaaaggga acattcaaaa tataattaat catcttaaca acctcaatga 1500 gattgtagga agaagcttac tcggaatatg gaagatcaac tcatacttcg gattaagcaa 1560 agacccttcg gagtccaaat caaaaaaccc gtcagttttt aatactgcaa aaaccatttt 1620 taagagtggg ggggttgatt actcgagcca actaaaggaa ataaaatccc ttttagaagc 1680 tcaaaacact agaataaaaa gtctagaaaa agcaattcaa tccttagaaa ataagattga 1740 accagagccc ttaactaaag aggaagttaa agagctaaaa gaatcgatta actcgatcaa 1800 agaaggatta aagaatatta ttggctaaaa tggctaatct taatcagatc caaaaagaag 1860 tctctgaaat cctcagtgac caaaaatcca tgaaagcgga tataaaagct atcttagaat 1920 tattaggatc ccaaaatcct attaaagaaa gcttagaaac cgttgcagca aaaatcgtta 1980 atgacttaac caagctcatc aatgattgtc cttgtaacaa agagatatta gaagccttag 2040 gtacccaacc taaagagcaa ctaatagaac aacctaaaga aaaaggtaaa ggccttaact 2100 taggaaaata ctcttacccc aattacggag taggaaatga agaattagga tcctctggaa 2160 accctaaagc tttaacctgg cccttcaaag ctccagcagg atggccgaat caattttaga 2220 cagaaccatt aataggtttt ggtataatct gggagaagat tgtctctcag aaagtcaatt 2280 cgatcttatg ataagattga tggaagagtc ccttgacggg gaccaaatta ttgatctaac 2340 ctctctacct agtgataatt tgcaggttga acaggttatg acaactaccg aagactcaat 2400 ctcggaagaa gaatcagaat tccttctagc aataggagaa acatctgaag aagaaagcga 2460 ttcaggagaa gaacctgaat tcgagcaagt tcgaatggat cgaacaggag gaacggagat 2520 tccaaaagaa gaagatggtg aaggaccatc tagatacaat gagagaaaga gaaagacccc 2580 ggaggaccgg tactttccaa ctcaaccaaa gaccattcca ggacaaaagc aaacgtctat 2640 gggaatgctc aacattgact gccaaaccaa tcgaagaact ctaatcgacg actgggcagc 2700 agaaatcgga ttgatagtca agaccaatag agaagactat ctcgatccag aaacaattct 2760 actcttgatg gaacacaaaa catcaggaat agccaaggag ttaatccgaa atacaagatg 2820 gaaccgcact accggagaca tcatagaaca ggtgatcgat gcgatgtaca ccatgttctt 2880 aggactaaac tactccgaca acaaagttgc tgagaagatt gacgagcaag agaaggccaa 2940 gatcagaatg accaagctcc agctctgcga catctgctac cttgaggaat ttacatgtga 3000 ttatgaaaag aacatgtata agacagaact ggcggatttc ccaggatata tcaaccagta 3060 cctgtcaaaa atccccatca ttggagaaaa agcgttaaca cgctttaggc atgaagctaa 3120 cggaaccagc atctacagtt taggtttcgc ggcaaagata gtcaaagaag aactatctaa 3180 aatctgcgac ttatccaaga agcagaagaa gttgaagaaa ttcaacaaga agtgttgtag 3240 catcggagaa gcttcaacag aatatggatg caagaagaca tccacaaaga agtatcacaa 3300 gaagcgatac aagaaaaaat ataaggctta caaaccttat aagaagaaaa agaagttccg 3360 atcaggaaaa tacttcaagc ccaaagaaaa gaagggctca aagcaaaagt attgcccaaa 3420 aggcaagaaa gattgcagat gttggatctg caacattgaa ggccattacg ccaacgaatg 3480 tcctaatcga caaagctcgg agaaggctca catccttcaa caagcagaaa aattgggtct 3540 ccagcccatt gaagaaccct atgaaggagt tcaagaagta ttcattctag aatacaaaga 3600 agaggaagaa gaaacctcta cagaagaaag tgatggatca tctacttctg aagactcaga 3660 ctcagactga gcaggtgatg aacgtcacca atcccaattc gatctacatc aagggaagac 3720 tctacttcaa gggatacaag aagatagaac ttcactgttt cgtagacacg ggagcaagcc 3780 tatgcatagc atccaagttc gtcataccag aagaacattg ggtcaatgca gaaagaccaa 3840 ttatggtcaa aatagcagat ggaagctcaa tcaccatcag caaagtctgc aaagacatag 3900 acttgatcat agccggcgag atattcagaa ttcccaccgt ctatcagcaa gaaagtggca 3960 tcgatttcat tatcggcaac aacttctgtc agctgtatga accattcata cagtttacgg 4020 atagagttat cttcacaaag aacaagtctt atcctgttca tattgcgaag ctaaccagag 4080 cagtgcgagt aggcaccgaa ggatttcttg aatcaatgaa gaaacgttca aaaactcaac 4140 aaccagagcc agtgaacatt tctacaaaca agatagaaaa tccactagaa gaaattgcta 4200 ttctttcaga ggggaggagg ttatcagaag aaaaactctt tatcactcaa caaagaatgc 4260 aaaaaatcga agaactactt gagaaagtat gttcagaaaa tccattagat cctaacaaga 4320 ctaagcaatg gatgaaagct tctatcaagc tcagcgaccc aagcaaagct atcaaggtta 4380 aacccatgaa gtatagccca atggatcgcg aagaatttga caagcaaatc aaagaattac 4440 tggacctaaa agtcatcaag cccagtaaaa gccctcacat ggcaccagcc ttcttggtca 4500 acaatgaagc cgagaagcga agaggaaaga aacgtatggt agtcaactac aaagctatga 4560 acaaagctac tgtaggagat gcctacaatc ttcccaacaa agacgagtta cttacactca 4620 ttcgaggaaa gaagatcttc tcttccttcg actgtaagtc aggattctgg caagttctgc 4680 tagatcaaga atcaagacct ctaacggcat tcacatgtcc acaaggtcac tacgaatgga 4740 atgtggtccc tttcggctta aagcaagctc catccatatt ccaaagacac atggacgaag 4800 catttcgtgt gttcagaaag ttctgttgcg tttatgtcga cgacattctc gtattcagta 4860 acaacgaaga agatcatcta cttcacgtag caatgatctt acaaaagtgt aatcaacatg 4920 gaattatcct ttccaagaag aaagcacaac tcttcaagaa gaagataaac ttccttggtc 4980 tagaaataga tgaaggaaca cataagcctc aaggacatat cttggaacac atcaacaagt 5040 tccccgatac ccttgaagac aagaagcaac ttcagagatt cttaggcata ctaacatatg 5100 cctcggatta catcccgaag ctagctcaaa tcagaaagcc tctgcaagcc aagcttaaag 5160 aaaacgttcc atggagatgg acaaaagagg ataccctcta catgcaaaag gtgaagaaaa 5220 atctgcaagg atttcctcca ctacatcatc ccttaccaga ggagaagctg atcatcgaga 5280 ccgatgcatc agacgactac tggggaggta tgttaaaagc tatcaaaatt aacgaaggta 5340 ctaatactga gttaatttgc agatacgcat ctggaagctt taaagctgca gaaaagaatt 5400 accacagcaa tgacaaagag acattggcgg taataaatac tataaagaaa tttagtattt 5460 atctaactcc tgttcatttt ctgattagga cagataatac tcatttcaag agtttcgtta 5520 atctcaatta caaaggagat tcgaaacttg gaagaaacat cagatggcaa gcatggctta 5580 gccactattc atttgatgtt gaacacatta aaggaaccga caaccacttt gcggacttcc 5640 tttcaagaga attcaataag gttaattcct aattgaaatc cgaagataag attcccacac 5700 acttgtggct gatatcaaaa ggctactgcc tatttaaaca catctctgga gactgagaaa 5760 atcagacctc caagcatgga gaacatagaa aaactcctca tgcaagagaa aatactaatg 5820 ctagagctcg atctagtaag agcaaaaata agcttagcaa gagctaacgg ctcttcgcaa 5880 caaggagacc tctctctcca ccgtgaaaca ccggaaaaag aagaagcagt tcattctgca 5940 ctggctactt ttacgccatc tcaagtaaaa gctattccag agcaaacggc tcctggtaaa 6000 gaatcaacaa atccgttgat ggctaatatc ttgccaaaag atatgaattc agttcagact 6060 gaaattaggc ccgtaaagcc atcggacttc ttacgtccac atcagggaat tccaatccca 6120 ccaaaacctg aacctagcag ttcagttgct cctctcagag acgaatcggg tattcaacac 6180 cctcatacca actactacgt cgtgtataac ggacctcatg ccggtatata cgatgactgg 6240 ggttgtacaa aggcagcaac aaacggtgtt cccggagttg cgcataagaa gtttgccact 6300 attacagagg caagagcagc agctgacgcg tatacaacaa gtcagcaaac agataggttg 6360 aacttcatcc ccaaaggaga agctcaactc aagcccaaga gctttgcgaa ggccttaaca 6420 agcccaccaa agcaaaaagc ccactggctc atgctaggaa ctaaaaagcc cagcagtgat 6480 ccagccccaa aagagatctc ctttgcccca gagatcacaa tggacgactt cctctatctc 6540 tacgatctag tcaggaagtt cgacggagaa ggtgacgata ccatgttcac cactgataat 6600 gagaagatta gccttttcaa tttcagaaag aatgctaacc cacagatggt tagagaggct 6660 tacgcagcag gtctcatcaa gacgatctac ccgagcaata atctccagga gatcaaatac 6720 cttcccaaga aggttaaaga tgcagtcaaa agattcagga ctaactgcat caagaacaca 6780 gagaaagata tatttctcaa gatcagaagt actattccag tatggacgat tcaaggcttg 6840 cttcacaaac caaggcaagt aatagagatt ggagtctcta aaaaggtagt tcccactgaa 6900 tcaaaggcca tggagtcaaa gattcaaata gaggacctaa cagaactcgc cgtaaagact 6960 ggcgaacagt tcatacagag tctcttacga ctcaatgaca agaagaaaat cttcgtcaac 7020 atggtggagc acgacacgct tgtctactcc aaaaatatca aagatacagt ctcagaagac 7080 caaagggcaa ttgagacttt tcaacaaagg gtaatatccg gaaacctcct cggattccat 7140 tgcccagcta tctgtcactt tattgtgaag atagtggaaa aggaaggtgg ctcctacaaa 7200 tgccatcatt gcgataaagg aaaggccatc gttgaagatg cctctgccga cagtggtccc 7260 aaagatggac ccccacccac gaggagcatc gtggaaaaag aagacgttcc aaccacgtct 7320 tcaaagcaag tggattgatg tgatatctcc actgacgtaa gggatgacgc acaatcccac 7380 tatccttcgc aagacccttc ctctatataa ggaagttcat ttcatttgga gaggacacgc 7440 tgaaatcacc agtctctctc tacaaatcta tctctctcta taataatgtg tgagtagttc 7500 ccagataagg gaattagggt tcttataggg tttcgctcat gtgttgagca tataagaaac 7560 ccttagtatg tatttgtatt tgtaaaatac ttctatcaat aaaatttcta attcctaaaa 7620 ccaaaatcca gtactaaaat ccagatctcc taaagtccct atagatcttt gtggtgaata 7680 taaaccagac acgagacgac taaacctgga gcccagacgc cgtttgaagc tagaagtacc 7740 gcttaggcag gaggccgtta gggaaaagat gctaaggcag ggttggttac gttgactccc 7800 ccgtaggttt ggtttaaata tcatgaagtg gacggaagga aggaggaaga caaggaagga 7860 taaggttgca ggccctgtgc aaggtaagac gatggaaatt tgatagaggt acgttactat 7920 acttatacta tacgctaagg gaatgcttgt atttacccta tataccctaa tgacccctta 7980 tcgatttaaa gaaataatcc gcataagccc ccgcttaaaa aatt 8024 //