ID V00140; SV 1; circular; genomic DNA; STD; VRL; 8031 BP. XX AC V00140; J02046; XX DT 03-NOV-1982 (Rel. 02, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 13) XX DE Cauliflower mosaic virus genome. XX KW circular; genome. XX OS Cauliflower mosaic virus OC Viruses; Ortervirales; Caulimoviridae; Caulimovirus. XX RN [1] RP 1-8031 RX DOI; 10.1093/nar/9.12.2871. RX PUBMED; 6269062. RA Gardner R.C., Howarth A.J., Hahn P., Brown-Luedi M., Shepherd R.J., RA Messing J.; RT "The complete nucleotide sequence of an infectious clone of cauliflower RT mosaic virus by M13mp7 shotgun sequencing"; RL Nucleic Acids Res. 9(12):2871-2888(1981). XX RN [2] RP 1-8031 RX DOI; 10.1007/BF00026781. RX PUBMED; 1627769. RA Yanagisawa S., Izui K.; RT "MNF1, a leaf tissue-specific DNA-binding protein of maize, interacts with RT the cauliflower mosaic virus 35S promoter as well as the C4 photosynthetic RT phosphoenolpyruvate carboxylase gene promoter"; RL Plant Mol. Biol. 19(4):545-553(1992). XX DR MD5; 2f4b68ae23b26d29649974cc1063d0cd. DR EPD; EP07015; CAMV_35MJ. DR EPD; EP07016; CAMV_35MN. DR EuropePMC; PMC1440423; 16571798. DR EuropePMC; PMC1526669; 16702420. DR EuropePMC; PMC3001031; 19143938. DR EuropePMC; PMC3130284; 21378120. DR EuropePMC; PMC3921208; 24523907. DR EuropePMC; PMC4498817; 26162084. DR EuropePMC; PMC4599878; 25403771. DR EuropePMC; PMC5052798; 27716385. DR GOA; P03555. DR GOA; P03558. DR InterPro; IPR000477; RT_dom. DR InterPro; IPR000588; Pept_A3A. DR InterPro; IPR009027; Ribosomal_L9/RNase_H1_N. DR InterPro; IPR011320; RNase_H1_N. DR InterPro; IPR021109; Peptidase_aspartic_dom_sf. DR InterPro; IPR037056; RNase_H1_N_sf. DR InterPro; IPR041373; RT_RNaseH. DR UniProtKB/Swiss-Prot; P03555; POL_CAMVC. DR UniProtKB/Swiss-Prot; P03558; IBMP_CAMVC. XX CC See also entries and . XX FH Key Location/Qualifiers FH FT source 1..8031 FT /organism="Cauliflower mosaic virus" FT /mol_type="genomic DNA" FT /db_xref="taxon:10641" FT CDS 364..1347 FT /note="reading frame I" FT /db_xref="GOA:P03546" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/Swiss-Prot:P03546" FT /protein_id="CAA23452.1" FT /translation="MDLYPEENTQSEQSQNSENNMQIFKSENSDGFSSDLMISNDQLKN FT ISKTQLTLEKEKIFKMPNVLSQVMKKAFSRKNEILYCVSTKELSVDIHDATGKVYLPLI FT TREEINKRLSSLKPEVRKIMSMVHLGAVKILLKAQFRNGIDTPIKIALIDDRINSRRDC FT LLGAAKGNLAYGKFMFTVYPKFGISLNTQRLNQTLSLIHDFENKNLMNKGDKVMTITYI FT VGYALTNSHHSIDYQSNATIELEDVFQEIGNVQQSDFCTIQNDECNWAIDIAQNKALLG FT AKTQSQIGNSLQIGNSASSSNTENELARVSQNIDLLKNKLKEICGE" FT CDS 1349..1828 FT /note="reading frame II" FT /db_xref="GOA:P03549" FT /db_xref="InterPro:IPR004917" FT /db_xref="UniProtKB/Swiss-Prot:P03549" FT /protein_id="CAA23453.1" FT /translation="MSITGQPHVYKKDTIIRLKPLSLNSNNRSYVFSSSKGNIQNIINH FT LNNLNEIVGRSLLGIWKINSYFGLSKDPSESKSKNPSVFNTAKNIFKSRGVDYSSQLKE FT VKSLLEAQNTRIKNLENAIQSLDNKIEPEPLTKEEVKELKESINSIKEGLKNIIG" FT CDS 1830..2219 FT /note="reading frame III" FT /db_xref="GOA:P03552" FT /db_xref="InterPro:IPR004986" FT /db_xref="UniProtKB/Swiss-Prot:P03552" FT /protein_id="CAA23454.1" FT /translation="MANLNQIQKEVSEILSDQKSMKSDIKAILELLGSQNPTKESLEAV FT AAKIVNDLTKLINDCPCNKEILEALGNQPKEQLIEQPKEKGKGLNLGKYTYPNYGVGNE FT ELGSSGNPKALTWPFKAPAGWPNQF" FT CDS 2201..3667 FT /note="reading frame IV" FT /db_xref="GOA:P03543" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001988" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/Swiss-Prot:P03543" FT /protein_id="CAA23455.1" FT /translation="MAESILDRTINRFWYNLGEDCLSESQFDLMIRLMEESLDGDQIID FT LTSLPSDNLQVEQVMTTTDDSISEESEFLLAIGEISEDESDSGEEPEFEQVRMDRTGGT FT EIPKEEDGEGPSRYNERKRKTPEDRYFPTQPKTIPGQKQTSMGMLNIDCQINRRTLIDD FT WAAEIGLIVKTNREDYLDPETILLLMEHKTSGIAKELIRNTRWNRTTGDIIEQVINAMY FT TMFLGLNYSDNKVAEKIDEQEKAKIRMTKLQLFDICYLEEFTCDYEKNMYKTEMADFPG FT YINQYLSKIPIIGEKALTRFRHEANGTSIYSLGFAAKIVKEELSKICDLSKKQKKLKKF FT NKKCCSIGEASVEYGGKKTSKKKYHKRYKKRYKVYKPYKKKKKFRSGKYFKPKEKKGSK FT RKYCPKGKKDCRCWICNIEGHYANECPNRQSSEKAHILQQAENLGLQPVEEPYEGVQEV FT FILEYKEEEEETSTEESDDESSTSEDSDSD" FT mRNA 3633..5666 FT /note="reading frame V" FT mRNA 5554..7333 FT /note="reading frame VI" FT old_sequence 6407 FT /replace="c" FT /citation=[1] XX SQ Sequence 8031 BP; 2931 A; 1658 C; 1570 G; 1872 T; 0 other; ggtatcagag ccatgaatcg gtttaaaaac caaactcaag agggtaaaac ctcaccaaaa 60 tacgaaagag ttcttaactc taaagataaa agatctttca agatcaaaac tagttccctc 120 acaccggtga ccgacaggtt taccaccgta aggtttcaga acaacatcga atgcgtttac 180 gccaacttcg actctcagct caagtcgtcg tacgatggta gatctaaaaa gatcaagaat 240 ctaagcctta aaaatcttag atgttatgaa gccttcctca ggaagtacct tctggaacaa 300 taaatctctc tgagaatagt actctaacga gtatccacag gaaaaataat cttctgtgtt 360 gagatggatt tgtatccaga agaaaatacc caaagcgagc aatcgcagaa ttctgaaaat 420 aatatgcaaa tatttaagtc agaaaattcg gatggattct cctccgatct aatgatctca 480 aacgatcaat taaaaaatat ctctaagacc caattaactt tggagaaaga aaagatattt 540 aaaatgccta acgttttatc tcaagttatg aaaaaagcgt ttagcaggaa aaacgagatt 600 ctttactgcg tctcgacaaa agaattatca gtggacattc acgatgccac aggtaaggta 660 tatctccctt taatcactag agaggagata aataaaagac tttctagctt aaaacctgaa 720 gtcagaaaga tcatgtccat ggttcatctt ggagcggtca aaatattgct taaagctcaa 780 tttcgaaatg ggattgatac cccaatcaaa attgctttaa tcgatgatag aattaattct 840 agaagagatt gccttctcgg tgcagccaaa ggtaatctag catacggtaa gtttatgttt 900 actgtatacc ccaagtttgg aataagcctt aatacccaaa gacttaacca aaccttaagc 960 cttattcatg attttgagaa taaaaatctt atgaataaag gtgataaagt tatgaccata 1020 acctatatcg taggatatgc attaactaat agtcatcata gcatagatta tcaatcgaat 1080 gctacaattg aactagaaga cgtatttcaa gaaattggaa atgtccagca atctgacttt 1140 tgtacaatac aaaatgacga atgcaattgg gccattgata tagcccaaaa caaagcctta 1200 ttaggagcta aaacccaatc ccaaattggt aatagtcttc aaataggaaa cagtgcttca 1260 tcctctaata ctgaaaatga attagctagg gtaagccaaa acatagatct tttaaaaaac 1320 aaattaaaag agatctgtgg agaataaaat gagcattacg ggtcaaccgc atgtttataa 1380 aaaggatact attattagac taaaaccatt gtctcttaat agtaataata gaagttatgt 1440 ttttagttcc tcaaaaggga acattcaaaa tataattaat catcttaaca acctcaatga 1500 gattgtagga agaagcttac tcggaatatg gaagatcaac tcatacttcg gactaagcaa 1560 agacccttcg gagtccaaat caaaaaaccc gtcagttttt aatactgcaa aaaacatttt 1620 taagagtagg ggggttgatt actcgagcca actaaaggaa gtaaaatccc ttttagaagc 1680 tcaaaatact agaattaaaa atctagaaaa tgcaattcaa tccttagata ataagattga 1740 accagagccc ttaactaaag aagaagttaa agagctaaaa gaatcgatta actcgatcaa 1800 agaaggatta aagaatatta ttggctgaaa tggctaatct taatcaaatc cagaaagaag 1860 tctctgaaat cctcagtgac caaaaatcca tgaaatcgga tataaaagct atcttagaat 1920 tgctaggatc ccaaaatcct actaaagaaa gcttagaagc cgttgcagcg aaaatcgtta 1980 atgacttaac caagctcatc aatgattgtc cttgtaacaa agagatatta gaagccttag 2040 gcaatcagcc taaagagcaa ctaatagaac aacctaaaga aaaaggcaaa ggccttaatc 2100 taggaaaata tacttacccc aattacggcg taggaaatga agaattagga tcctctggaa 2160 accctaaagc tttaacttgg cctttcaaag ctccagcagg atggccgaat caattttaga 2220 caggaccatt aaccggttct ggtataacct gggagaagat tgtctctcag aaagtcaatt 2280 tgaccttatg ataaggttaa tggaagagtc ccttgacggg gaccaaatta ttgatctaac 2340 ctctctacct agtgataatt tgcaggtcga acaggttatg acaactaccg acgactcgat 2400 ctcggaagaa tcagaattcc ttctagcaat aggagaaata tctgaagacg aaagtgattc 2460 aggagaagaa cctgaattcg aacaagttcg aatggatcga acaggaggaa cggagattcc 2520 caaagaagaa gatggtgaag gaccatctag atacaatgag agaaagagaa agaccccgga 2580 ggaccggtac tttccaactc aaccaaagac catcccagga caaaagcaaa cgtctatggg 2640 aatgctcaac attgactgcc aaatcaatcg aagaacttta atcgatgatt gggcagcaga 2700 aatcggattg atagtcaaaa ccaacagaga agactatctt gatccagaaa caatactact 2760 cttgatggaa cacaaaacat caggaatagc caaggagtta atccgaaata caagatggaa 2820 ccgtactacc ggcgatatca tagaacaggt gatcaatgca atgtacacca tgttcttagg 2880 acttaactac tccgacaaca aggttgctga aaagatagac gagcaagaga aggccaagat 2940 cagaatgacc aagctccagc tcttcgacat ctgctacctt gaagaattta catgtgatta 3000 tgagaagaac atgtacaaga cggaaatggc ggatttccct ggatacatca accagtacct 3060 gtcaaaaatc cccatcatag gagaaaaagc gctaacacgc tttaggcatg aagccaacgg 3120 aaccagcatc tacagcttag gtttcgcggc aaagatagta aaagaagaac tatcaaaaat 3180 ctgcgactta tcaaagaagc agaagaagtt gaagaaattc aacaagaaat gctgcagcat 3240 cggtgaagct tcagtagaat atggaggcaa gaaaacatcc aagaagaagt atcataagcg 3300 atacaagaaa agatataagg tctataaacc ttataagaag aagaagaaat tccgatccgg 3360 aaaatacttc aagcccaaag agaagaaggg ctcaaagcga aagtattgcc caaaaggcaa 3420 gaaggactgc agatgttgga tctgcaatat cgaaggccat tacgccaacg aatgtcctaa 3480 tcgacaaagc tcggagaagg ctcacatcct tcaacaagca gagaatttgg gtctccagcc 3540 cgttgaagaa ccctatgaag gagttcaaga agtattcatc ttagaataca aagaagagga 3600 agaagaaacc tctacagaag aaagcgatga tgaatcatct acttctgaag actcagactc 3660 agattgagca ggtgatgaac gtcaccaatc ccaattcgat ctacatcaag ggaagactct 3720 acttcaaagg atacaagaag atagagcttc actgttttgt agacacggga gcaagcttat 3780 gcatagcatc caagttcgtc ataccagaag aacattgggt taatgcagaa agaccaataa 3840 tggtcaaaat agcagatgga agttcaatta ccatcagcaa agtctgcaaa gacatagact 3900 tgatcatagc cggcgagata ttcaaaattc ccaccgtcta tcagcaagaa agtggcatcg 3960 atttcataat cggcaacaac ttttgtcaac tgtatgaacc attcatacag tttacagata 4020 gagttatctt cacaaagaac aagtcctatc ctgttcatat tacgaagcta acaagagcag 4080 tgcgagtagg catcgaagga tttcttgaat caatgaagaa acgttcaaag actcagcaac 4140 ctgagccggt gaacatttcg acaaacaaga tagaaaatcc actagaagaa attgctattc 4200 tttcagaggg gaggaggtta tcagaagaaa aacttttcat cactcaacaa agaatgcaaa 4260 aaatcgaaga actactagag aaagtatgtt cagaaaatcc attagatcct aacaagacta 4320 agcaatggat gaaagcttca atcaagctca gcgacccaag caaagctatc aaggttaaac 4380 ccatgaaata cagcccaatg gatcgtgaag aatttgacaa gcaaatcaaa gagttactgg 4440 accttaaagt cattaaaccc agtaaaagcc ctcacatggc accagccttc ttggtcaaca 4500 atgaagccga gaagcgaaga ggaaagaaac gtatggtagt caactacaaa gctatgaaca 4560 aagccaccat aggagacgca tacaatcttc ccaacaaaga cgagttactt acactcattc 4620 gaggaaagaa gatcttttct tccttcgact gtaagtccgg attctggcaa gttctacttg 4680 atcaagaatc aagacctcta acggcattca catgtccaca aggtcactac gaatggaatg 4740 tggtcccttt cggcctaaag caggcaccat ccatattcca gagacacatg gacgaagcat 4800 ttcgtgtgtt cagaaaattc tgttgcgtgt atgtcgacga catcctcgta ttcagtaaca 4860 acgaagaaga tcacctactt cacgtagcaa tgatcttaca aaagtgcaat caacatggaa 4920 tcattctttc caagaagaaa gcacaactct tcaagaagaa gataaacttc cttggtctag 4980 aaatagatga aggaacacac aagcctcaag gacatatctt ggaacatatc aacaaattcc 5040 cagataccct tgaagacaag aagcaacttc agagattctt aggcatccta acatatgcct 5100 ctgattatat cccgaagcta gctcaaatca gaaagcctct gcaagccaag cttaaagaaa 5160 atgttccatg gaaatggaca aaggaggaca ccctctacat gcaaaaggtg aagaaaaatc 5220 tgcaaggatt tcctccacta catcatccct taccagagga aaagctgatc atcgagaccg 5280 acgcatcaga cgactactgg ggaggtatgt taaaagctat caaaattaac gaaggtacta 5340 ataccgagtt aatttgcaga tacgcatctg gaagctttaa agctgcagaa aggaattacc 5400 acagcaatga caaagagaca ttggcggtaa taaatactat aaagaaattc agtatttatc 5460 taactcctgt tcattttctg attaggacag ataatactca tttcaagagt tttgttaacc 5520 ttaattacaa aggagattca aaacttggaa gaaacatcag atggcaagca tggcttagcc 5580 actattcgtt tgatgttgaa catattaaag gaaccgacaa ccactttgcg gacttccttt 5640 caagagaatt caataaggtt aattcctaat tgaaatccga agataagatt cccacacact 5700 tgtggctgat atcaaaaagg ctactaccta tataaacaca tctctggaga ctgagaaaat 5760 cagacctcca agcatggaga acatagaaaa actcctcatg caagagaaaa tactaatgct 5820 agagctcgat ctagtaagag caaaaataag cttagcaaga gctaacggct cttcgcaaca 5880 aggagacctc cctctccacc gtgaaacacc ggtaaaagaa gaagcagttc attctgcact 5940 ggccactttt acgccaactc aagtaaaggc tattccagag caaacggctc ctggtaaaga 6000 atcaacaaat ccgttgatgg ctagtatctt gccaaaagat atgaacccag ttcaaactgg 6060 gataaggctt gcagtgccag gggacttttt acgtcctcat cagggaattc caatcccaca 6120 aaaatctgag cttagcagca tagttgctcc tctcagagca gaatcgggta ttcaccaccc 6180 tcatatcaac tactacgttg tgtataacgg tccacacgcc ggtatatacg atgactgggg 6240 ttgtacaaag gcggcaacaa acggcgttcc cggagttgca tacaagaagt ttgccactat 6300 tacagaggca agagcagcag ctgacgcgta cacaacaagt cagcaaacag acaggttgaa 6360 cttcatcccc aaaggagaag ctcaactcaa gcccaagagc tttgcgaagg ccttaaccag 6420 cccaccaaag caaaaagccc actggctcac gctaggaacc aaaaggccca gcagtgatcc 6480 agccccaaaa gagatctcct ttgccccgga gatcaccatg gacgactttc tctatctcta 6540 cgatctagga agaaagttcg acggagaagg tgacgatacc atgttcacca ccgataatga 6600 gaagattagc ctcttcaatt tcagaaagaa tgctgaccca cagatggtta gagaggccta 6660 cgcggcaggt ctcatcaaga cgatctaccc gagtaataat ctccaggaga tcaaatacct 6720 tcccaagaag gttaaagatg cagtcaaaag attcaggact aactgcatca agaacacaga 6780 gaaagatata tttctcaaga tcagaagtac tattccagta tggacgattc aaggcttgct 6840 tcataaacca aggcaagtaa tagagattgg agtctctaag aaagtagttc ctactgaatc 6900 aaaggccatg gagtcaaaaa ttcagatcga ggatctaaca gaactcgccg tgaagactgg 6960 cgaacagttc atacagagtc ttttacgact caatgacaag aagaaaatct tcgtcaacat 7020 ggtggagcac gacactctcg tctactccaa gaatatcaaa gatacagtct cagaagacca 7080 aagggctatt gagacttttc aacaaagggt aatatcggga aacctcctcg gattccattg 7140 cccagctatc tgtcacttca tcaaaaggac agtagaaaag gaaggtggca cctacaaatg 7200 ccatcattgc gataaaggaa aggctatcgt tcaagatgcc tctgccgaca gtggtcccaa 7260 agatggaccc ccacccacga ggagcatcgt ggaaaaagaa gacgttccaa ccacgtcttc 7320 aaagcaagtg gattgatgtg atatctccac tgacgtaagg gatgacgcac aatcccacta 7380 tccttcgcaa gacccttcct ctatataagg aagttcattt catttggaga ggacacgctg 7440 aaatcaccag tctctctcta caaatctatc tctctctatt ttctccataa taatgtgtga 7500 gtagttccca gataagggaa ttagggttct tatagggttt cgctcacgtg ttgagcatat 7560 aagaaaccct tagtatgtat ttgtatttgt aaaatacttc tatcaataaa atttctaatt 7620 cctaaaacca aaatccagta ctaaaatcca gatcacctaa agtccctata gatctttgtc 7680 gtgaatataa accagacatg agacgactaa acctggagcc cagacgccgt tcgaagctag 7740 aagtaccgct taggcaggag gccgttaggg aaaagatgct aaggcagggt tggttacgtt 7800 gactcccccg taggtttggt ttaaatatga taaagtggac ggaaggaagg aggaagacaa 7860 ggaaggataa ggttgcaggc cctgtgcaag gtaagaagat ggaaatttga tagaggtacg 7920 ttactatacc tatactatac gctaagggat gcttgtattt taccctatac cccctaataa 7980 ccccttatcg attttaagaa ataatccgca taagcccccg cttaaaaaat t 8031 //