ID U96748; SV 1; linear; genomic DNA; STD; PLN; 4975 BP. XX AC U96748; XX DT 23-MAY-1997 (Rel. 52, Created) DT 14-FEB-2020 (Rel. 143, Last updated, Version 4) XX DE Glycine max copia-like retrotransposon Tgmr, complete sequence. XX KW . XX OS Glycine max (soybean) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; OC Glycine subgen. Soja. XX RN [1] RP 1-4975 RX DOI; 10.1023/A:1005851623493. RX PUBMED; 9207841. RA Bhattacharyya M.K., Gonzales R.A., Kraft M., Buzzell R.I.; RT "A copia-like retrotransposon Tgmr closely linked to the Rps1-k allele that RT confers race-specific resistance of soybean to Phytophthora sojae"; RL Plant Mol. Biol. 34(2):255-264(1997). XX RN [2] RP 1-4975 RA Bhattacharyya M.K., Gonzales R.A., Kraft M., Buzzell R.I.; RT ; RL Submitted (08-APR-1997) to the INSDC. RL Plant Biology, The Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, RL Ardmore, OK 73401, USA XX DR MD5; ec01ffb0b9b0be10e9b386f85866e77a. DR EuropePMC; PMC2666490; 19153256. DR EuropePMC; PMC5258746; 28174588. XX FH Key Location/Qualifiers FH FT source 1..4975 FT /organism="Glycine max" FT /mol_type="genomic DNA" FT /note="contains ICTV exemplar Glycine max Tgmr virus" FT /db_xref="taxon:3847" FT source 6..4970 FT /organism="Glycine max" FT /mol_type="genomic DNA" FT /note="contains ICTV exemplar Glycine max Tgmr virus; FT copia-like retrotransposon Tgmr" FT /db_xref="taxon:3847" FT repeat_region 1..5 FT /rpt_type=DIRECT FT /note="duplicated target site" FT repeat_region 6..264 FT /rpt_type=LONG_TERMINAL_REPEAT FT repeat_region 6..10 FT /rpt_type=DIRECT FT /note="imperfect LTR terminal repeat" FT repeat_region 260..264 FT /rpt_type=DIRECT FT /note="imperfect LTR terminal repeat" FT misc_feature 4713..4721 FT /note="polypurine tract" FT repeat_region 4723..4970 FT /rpt_type=LONG_TERMINAL_REPEAT FT repeat_region 4723..4727 FT /rpt_type=DIRECT FT /note="imperfect LTR terminal repeat" FT repeat_region 4966..4970 FT /rpt_type=DIRECT FT /note="imperfect LTR terminal repeat" FT repeat_region 4971..4975 FT /rpt_type=DIRECT FT /note="duplicated target site" XX SQ Sequence 4975 BP; 1458 A; 1218 C; 826 G; 1473 T; 0 other; tagggtctta gtcgaagctt attaatcagt tagaaatctg tttagtagtt agttagttag 60 ttaaaagatg ttagagttag tttcctaaat gtaactgact aaactactca aagcgcttct 120 ctttcctcag caactctgca aagatataaa tgcataataa atgcaacaat aaaaaaaagc 180 tctcatgcag tatttggtca tcttcacgtg ttttacgtag cttactacat tttctctctc 240 tatggcacaa tatgcttatt aatatggtat cagagctctt cttgtgaaga gttctgttgt 300 gccaccgtct ttacgctcac gagtttgcct ttttcatcgt tttctcacca tgaactagtt 360 actactaaac tcaaaaagct atctctatct ccacccaagt gagaacccag ctgttgcact 420 agtttctcca gctttagatt ccagcaatta ccattcatgg agtaggtaca tgataacggc 480 attgagcgcc aagaacaaag tagaattcgt aaacggaaaa gcacccgagc cattgaagtc 540 tgatagaact tacggggcat ggcgtcgctg caacaacatg gtggtatcct ggttagttca 600 ttcagtatcc atctccatta gacaaagtgt cttgtggatg gacaaagcgg aagaaatttg 660 gaatgacttg aaatctcgat acgcacaagg ggaccttttg agagtttctg aactccaaca 720 agaagcttca tccatcaagc aaggatctct ttctattacg gagtatttta caaagctgcg 780 agtcatatgg gacgagatcg aaaacttcat acctgatccc atatgttcat gcactgtcaa 840 gtgtacttgc ttagtactca ccaccatagc tcaacgaaag cgagaagacc gagctatgca 900 gttcctgcaa gggttgaacg aacagtatag caatatatgt tctcatgtgt tgctcatgga 960 cccaataccc acaataccga aaatcttctc gtacgtggca cagcaggaaa gacaacttac 1020 aggtaacaac tctttatcaa gctttaatct cgaaactaaa gagggacctt ccattaacgc 1080 tgtcaaaagt gtttgtgaat tcggtggacg cattgaccat aatgaaagcg tttgttataa 1140 gaagcacgga ctacctcaga attacgatgg gaaagggaaa agatacaaca caagaaagac 1200 atgtgcctac tgcagaaaac ttggacacac aattgatgtt tgctacaaga aacaagggta 1260 tcccccagga ttcaaattca acaatggcaa agcaatagct aacaatgtag tggcagtaga 1320 aggaaaagcc acagatgacc agatactacc ccaagaatct caagaactgg tttgtttctc 1380 accggagcaa tacaaggcac tgctagcttt aatacaacag ccatcggccg gaaactcagc 1440 acccatcaag ccataggtcg cctttatttc atcttgttcc aataacgatg caacaggtat 1500 aattctatct tgcgaaaaag ccaattctac ctcctggatc ttagattcag gagccactga 1560 tcatgtttcc tcctctctaa caaattttca ctcatatcat caaattaatc ccatcacagt 1620 taaactacca aatggtcatc ttgtctatgc tacccactca ggcacaatac aactttctgc 1680 attcattaca ctaaatgatg tcttatacgt gccatctttt actttcaact taatatccat 1740 atcaaagctt gtgtcttcta ctaattgcaa attaatattt tcatcaaata tttgtattct 1800 acaggatacc aataccaagg tgaggattgg tacagctgaa gtgagtcgcg gtctctatca 1860 attcaccccc gaagcataaa aaacacacac catatgttcc actattacac acccaaaatg 1920 taaagtcctt cctataaatc tgtggcactt tcgtatgggc catccttccc tcgaaagatt 1980 acaagccatg cagtcctatt atccgttttt gaacaacaac aaaaacttca tatgtaatac 2040 atgtcattat gcaaagcata agagattact tttctcttct agcacctttc atgcatcaaa 2100 caaatttgag cttttacata ttgatatttg ggggccatgc tccataacaa ccctttatgg 2160 gcaccgatat ttcttaacca tcatagatga cttctcccga tatacatgga ctcatctcat 2220 gcacacaaaa gccgaaacac gtaaaatcat tactgatttc attgcatatg ttgaaactca 2280 atttgatagt aaagttaaaa ttctacaaag cgataatgga gctgaatttc tcatgcatga 2340 tttctatgct cgaaagggta taatccatca aactacttgt gtcgaaacgc ctgagcaaaa 2400 tggcattgcc gagagaaagc atcaacatct cttgaatgtc acacgagcac tcttatatca 2460 agcacaactt ccactaaatt tctggtgttt tgcattgctt catgctgcat acctcataag 2520 tcgtatacct accccttttt tgaaagatat atctccttat gaaaaattat atgtgcaacc 2580 ctgcgatatc tctaatctcc gtgtttttgg gtgcttatgt tacgttagta cccttcagaa 2640 tcatcgacaa aaacttgatc ctcgagctca tccttgcata tttcttggtt gtaaaccaca 2700 tacaaaaggg tatctcgttt ataatctcca ttctcataac ataactgctt ctcgtaatat 2760 tgttttttta tgaggatcac tttccaatat tacatgaaac ccaacacttc gataataccg 2820 atacgcatat ctcgtcaatt cccttctcta gcaacaccca aattcctgac actatgatga 2880 cacacacagc caacccaaac aatcctaccc acctcacgat acctcctgcc aactccccta 2940 cttcttctac tcaggacaac tcatcttcct cacctccttg gacacccagc ttacgtcgtt 3000 ctacgagaac gagacatcca cccacatact tacaggactt tcatcgcgtt ctcacttcac 3060 atgctgatac ctcctcgacc aaggttaagt accctctcca ctttgtctta tcttattctc 3120 atttgtctca ttcccataaa cacttcatca tgtctataac cgcgatagct aaacccaatt 3180 catatgctga ggcttctagc tatgactgtt ggattaaagc catgcaggtc gagttaaagg 3240 ctcttcaaca gaaccacact tggattctaa ctccacttcc cccacacaaa aaggccattg 3300 gatgtcgctg ggtttacaaa gtcaagcaca atgcggatgg aaccattgaa agatacaaag 3360 cgtgactagt agccaaagga tacactcaac aggaaggttt ggattttctc gatacttttt 3420 cccccgtggc caagctcacc actgttcaaa tgcttctagc ccttgctgct ctttgtaact 3480 ggcaccttag acaactcgac gtcaacaatg cttttcttca tggggatctt aacgaagaag 3540 tttatatgaa gcttccacca ggactggttg tggataaccc caacctcatt tgtcaccttc 3600 aacgttcctt atatggactt aaacaagcaa gtcggaaatg gttcacacgg ctttcgtcat 3660 tccttttctc ccaaggcttt cgtcaatctt cagttgacca ctcacttttc ttatactcta 3720 acaatgataa tactgtaaca gctattcttg tttatgttga cgacatcatc ttggcaggag 3780 ataacctcaa gtctatcact cactttacca agtttctcga tcaaactttc agcattaagg 3840 atctcggtat tctgaagttc ttcctcggac tcgaggttgc tcgttcaagt cacggcatac 3900 acttatgtca gggtaaatat gccctggata ttctatcaga ttcaggtatg cttggttccc 3960 gtcctacctc tactcccatg gattactcta cacgtttgag tgcttccatg ggaacgccat 4020 tgtcagaaac ttctgcttct tcctacagat gattaatcga tcgcctcata tatcttacga 4080 acacccgacc caatattact catgcagttc aacaactaag tcaatatatg gccaatccca 4140 cttctacaca ctctcaggct actttttgaa tcttacgcta cctcaaagga tctcctggtt 4200 cgggcatatt ctttgctgct cacagtacac tcactctcaa ggcattcagt gactccgatt 4260 ggacaggctg tcgcgacaca cgatgctcca tcactggctt ctcagtttat ctgggtgatt 4320 atctcatttc ctggcgatcc aagaagcaat ctacagtctc tcgcagctcc tctgaggcag 4380 agtatcgagc cttggcctcc actacatgtg aacttcaatg gctaagctac cttcttcacg 4440 atttttgggt cccttttctt caacctgcca cactctattg tgacaatcaa tccgctattc 4500 aaatagcttc aaacccagtt ttccacgaac gtactaaaca catcgagatc gactgccata 4560 tcgtgcgaga caaagtgaac gcaggcttgt taaaacttct tccagtttct tcttcaatgc 4620 agcttgccga catcttcaca aagcctctca cccctgctat ttttcaaggt ttatgttcca 4680 agctgggaat gatgaacatc cattcccagc ttgagggggg gctcttagca gaagcttatt 4740 aatcagttag aaatctgttt agtagttagt tagttagtta aaagatgtta gagttagttt 4800 cctaaatgta actgactaaa ctactcaaag cgcttctctt tcctctgcaa ctctgcaaag 4860 atataaatgc aacaataaaa aaaagctctc atgcagtatt tggtcatctt cacgtgtttt 4920 acgtatctta ctacattttc tctctctatg gcacaatacg cttattaata taggg 4975 //