Dbfetch
ID U95208; SV 2; linear; genomic DNA; STD; VRL; 7206 BP. XX AC U95208; XX DT 07-OCT-1997 (Rel. 52, Created) DT 29-JUN-2001 (Rel. 68, Last updated, Version 4) XX DE Petunia vein clearing virus, complete genome. XX KW . XX OS Petunia vein clearing virus OC Viruses; Ortervirales; Caulimoviridae; Petuvirus. XX RN [1] RP 1-7206 RX DOI; 10.1006/viro.1997.8712. RX PUBMED; 9299626. RA Richert-Poggeler K.R., Shepherd R.J.; RT "Petunia vein-clearing virus: a plant pararetrovirus with the core RT sequences for an integrase function"; RL Virology 236(1):137-146(1997). XX RN [2] RP 1-7206 RA Richert-Poeggeler K.R., Hohn T.; RT "Isolation of an infectious full-length clone of petunia vein clearing RT virus (PVCV) from infected Nicotiana glutinosa"; RL Unpublished. XX RN [3] RP 1-7206 RA Richert-Poeggeler K.R., Shepherd R.J.; RT ; RL Submitted (26-MAR-1997) to the INSDC. RL Agronomy, University of Kentucky, Lexington, KY 40546-0091, USA XX RN [4] RC Sequence update by submitter RP 1-7206 RA Richert-Poeggeler K.R., Shepherd R.J.; RT ; RL Submitted (28-JUN-2001) to the INSDC. RL Agronomy, University of Kentucky, Lexington, KY 40546-0091, USA XX DR MD5; 544953b852b9085ac3a458f04a379521. DR EuropePMC; PMC212712; 12970195. XX CC On Jun 28, 2001 this sequence version replaced gi:2463654. XX FH Key Location/Qualifiers FH FT source 1..7206 FT /organism="Petunia vein clearing virus" FT /host="petunia hybrida cv. Himmelsroeschen" FT /mol_type="genomic DNA" FT /note="isolated from Nicotiana glutinosa which can be FT infected with the virus via grafting" FT /db_xref="taxon:59504" FT CDS 51..6590 FT /codon_start=1 FT /product="ORF I polyprotein" FT /note="contains putative movement protein, RNA binding FT domain, protease, reverse transcriptase, and RNase H" FT /db_xref="GOA:Q91DM0" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR028919" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041577" FT /db_xref="UniProtKB/Swiss-Prot:Q91DM0" FT /protein_id="AAK68664.1" FT /translation="MTSPSDYQSNSSLATTYSNAPKLSKALSNKYDYLYEVDILKENQK FT ISDTYLPLLNPYSAFAKRSVTPWSQIRSLVQSKPRHVKEYVAASKLDQHPVFATGEEQF FT VTLHIPEEFASHWKSHQFTHIHFGAVKIALTYHGRKGQPVVARLALLDTRYLEYQHANL FT GTAEITLNAGTVFITLFPNFTMSLSDANLSTALKIQVQIQGAPLTKDSIQATLHYQIAW FT RVQNHAMDLTLPGGEEALFLKIDAGSGATQCTQVPRQLSKEDLIKILPDSWVTNYEKLR FT EPEEPLRSTEVSMSKRHDKSVAISFDHSHYKKLRNTHHFMGMISDDVIVLDDPETFSKT FT LPSLMQTHDWIHHFQLDGRAVSWYKDPFDGHCPWDIDCQCYSCLYSEDEEDFEDGFPTK FT YKGIPRPGSIAERKMQEEANLKKLYEEKDPFVGSLSRPGKYEYLVRYDAPSWAKDPHLT FT VEPTGWDSDEPIPPKQPFTTRNTLPKIYMFNPLNYENNFPPLSSFSKDGADHTPKIPKR FT NVVLPSGAKDPTGDLEATVNWQTENALAQNRMLTTIDRTLKETVTKVDRVTDQSSKNQG FT LIKVLEQQLQDLNKRICPPGTSLFHFFDQQKSEMASLKEQIRLLKEQPQKNETDTPSYQ FT SSYQPFHSFSSPYMPSNPPNSPFTTFANTPQPQPSLFSQYPIQPKSPNTFDLAKLVWEK FT KDAIAAEKRAKKKLQKDEVKQKTSLPPESKRPDPQSSSHLGDQFMISDPALPKVYALNE FT PSVPSEDTSSQSYISTEESVEDTDSFSVVSEESTQLSQLSSSSNDSPENNENTLPQTFM FT VRPTEPEISEVEDEVDGMTEEPIPERRPEITPPKMVGTGFHTFSLDDISITKWPERIQD FT FHTWMLTKQLVEREPFLILSEFTARLSGTLREWWNSVGPDDKNRFLTSQDFTWNIRILY FT SYFCGDQSQNKEELRRQIFEMKCLSYDRKKIDRHFQRMIKLFYHIGGDISLKQAFISSL FT PPILSERISALIKERGTSVTQMHVGDIRQTAFYVLDDLCSKRKFFNQMKKMSRDLEKAC FT TKSDLIIKGDKGCSGYCNPSRRRKYKRFKLPSFKERDGRQYRKRRRFFRRSKTSKAMRQ FT KPRSCFTCGKIGHFSRNCPQNKKSIKLISEIQKYTGIDIEDDLESVFSIEDEPSEDTLF FT SLEFYEEYAGEQYQITSYEAPKTENPPLPKIHTIVEIPQTEVKIYTSKWDKPISVIAFY FT DTGAAYSIMDPAILPSEYWIPHFRHFGTADDGILTTTVKTKHPITIEFFPGFKYTTKLL FT GSDIPGKDLLIGFDIYRQLNNKLRIGADGIRWKNQFKRYTEIPRLFQLTTSNELQQLED FT VIKNQLCADSHVDFLSKCSHPLWLNQDFFIQLPFKKNENINPTKASHSGMNPEHLQLAI FT KECDELQQFDLIEPSDSQWACEAFYVNKRSEQVRGKLRLVINYQPLNHFLQDDKFPIPN FT KLTLFSHLSKAKLFSKFDLKSGFWQLGIHPNERPKTGFCIPDRHFQWKVMPFGLKTAPS FT LFQKAMIKIFQPILFSALVYIDDILLFSETLEDHIKLLNQFISLVKKFGVMLSAKKMIL FT AQNKIQFLGMDFADGTFSPAGHISLELQKFPDTNLSVKQIQQFLGIVNYIRDFIPEVTE FT HISPLSDMLKKKPPAWGKCQDNAVKQLKQLAQQVKSLHIPSEGKKILQTDASDQYWSAV FT LLEEHNGKRKICGFASGKFKVSEQHYHSTFKEILAVKNGIKKFNFFLIHTNFLVEMDMR FT AFPKMIRLNPKIVPNSQLLRWAQWFSPYQFEVKHLKGKDNILADFLSRPHEFSQRLKNS FT PKVLMFQRRTRSSSTKSKADSSQSTGSSYKLSHNLPENPPEVFNLDYPWDTSVFLERRT FT FYELQVFKKYGGSILRPFGVDPEYPFAHIFIPNPTDFSEDLLWMFWYLLNHFHILMKFR FT CSKFSKIDQVNPWMLKFLLWFNNHNYWASLFKCMKGIKKYVVIWFYRPVNYYQGKLCAL FT PHSSIVKWNHVSVLNDEDEYSELQRFIFQENKCIPKEIWPGSSGSWNYGNSDHPHGQWI FT RDALREYREMNDYFQDAQDPYPAYSKVDLTQEELNTLRITRSYGSSSEDADMVKRSIYT FT VQSNIVKDSPRKRKGKAKSRSSTRSEKRRAKNKCKYRSLHGEDWWIELGYSTKPSTPSW FT TQDSSSEPCV" XX SQ Sequence 7206 BP; 2383 A; 1470 C; 1285 G; 2068 T; 0 other; tggtatcaga gccatccatt ttgttgaggg aggaaacatt tctcaccata atgacttctc 60 cttctgatta tcaatccaat tcctctctgg ctaccactta ttctaatgca cctaaactct 120 ctaaagcttt gtctaataaa tatgactacc tttatgaagt agatatcctt aaagaaaacc 180 aaaaaatatc agatacctat cttcctttgt taaatcctta ctctgctttt gcaaagagat 240 ccgttacccc ttggtctcag atccgttcat tagtccagtc taagcctcgc catgtgaaag 300 aatatgttgc tgcttccaaa ttagatcagc atcctgtctt tgctacagga gaagaacagt 360 ttgttactct acatattcca gaagaatttg cttctcactg gaaatcccac caattcactc 420 atatccactt tggtgctgtt aaaattgccc ttacctacca tggaagaaag ggtcaacctg 480 ttgttgccag attagcactc ttagatacta gatatcttga ataccaacat gctaatcttg 540 gaactgctga aatcactctc aatgcaggca cagtcttcat tactctcttc cctaacttta 600 ccatgtcttt atcagacgcc aatctgtcca cagccttaaa aatccaagtc caaatccaag 660 gagctcccct tacaaaagac tccatccagg caactttaca ttaccaaatt gcttggcgtg 720 tccaaaatca tgctatggat ttgactctcc ctggaggtga ggaagccttg ttcctcaaaa 780 ttgatgccgg aagtggagcc acccaatgta cccaagtccc tagacagttg tcaaaagaag 840 atctaatcaa aatattgcct gattcttggg taacaaatta tgaaaagtta agggaaccag 900 aagaacctct ccgttccact gaagtctcaa tgtcaaagag acatgataaa tcagtagcta 960 tcagttttga tcattcccat tataagaagc tcagaaacac ccatcacttc atgggtatga 1020 tttcagatga tgtcattgtc ttggatgatc ctgaaacttt ttccaaaact cttccatctc 1080 tcatgcaaac tcatgattgg atccatcatt tccaacttga tggacgtgct gtatcatggt 1140 ataaagatcc ttttgatggt cattgtccat gggatattga ttgccaatgt tattcttgtt 1200 tatacagtga agatgaagag gattttgaag atggatttcc tacaaaatac aaagggattc 1260 ccagaccagg aagtattgct gaaagaaaga tgcaagaaga agctaatctc aagaaacttt 1320 atgaggagaa ggatcctttt gtgggatcat tgagcaggcc aggcaaatat gagtatctcg 1380 ttagatacga tgccccatct tgggccaaag atcctcatct gacagtggag ccaacaggtt 1440 gggatagtga tgaaccaatt ccacctaagc aaccattcac aaccagaaat accttgccaa 1500 aaatttacat gttcaaccca ctcaattatg aaaacaactt tccacctttg tcatcatttt 1560 ctaaagatgg tgcagatcat actccaaaaa ttccaaagag aaatgttgtt ttaccatctg 1620 gtgcaaaaga cccaactggt gatcttgagg caactgtaaa ttggcaaaca gaaaatgctt 1680 tggctcagaa taggatgtta acaaccattg ataggaccct caaggagact gtaaccaagg 1740 ttgatagagt cacagatcag tcctcaaaaa atcaaggtct tatcaaagtt ctcgaacaac 1800 agctccaaga ccttaacaag aggatatgtc ccccaggaac atccttattt cacttctttg 1860 atcaacaaaa gagtgaaatg gcatccctta aagaacaaat cagacttctc aaagaacaac 1920 cacagaaaaa tgaaactgat accccatctt accagtcctc atatcagcct tttcacagtt 1980 tctcttcccc atatatgccc tcaaatccgc ctaactcacc gttcacaact tttgcaaata 2040 ctccacaacc acaaccttct cttttttctc aatatccaat acagccaaaa tccccaaata 2100 cctttgactt agccaaacta gtctgggaga aaaaagatgc aattgctgca gaaaaaaggg 2160 ccaagaagaa gctacaaaaa gatgaggtaa agcaaaaaac ttctttacct ccagaatcaa 2220 aaaggccaga tccccagtct agcagtcacc ttggtgatca gttcatgatt tctgatccag 2280 ctttaccaaa agtttacgcg ctgaatgaac cttcagttcc ttcggaagat acatcctccc 2340 aatcatacat cagtactgag gaatcagtag aagacacaga ctctttctct gtagtctcgg 2400 aagaatcaac ccaactttct caactctcca gttcttctaa tgattcacca gaaaacaatg 2460 aaaatacact acctcagacc tttatggttc gtccaactga accggaaata tctgaagttg 2520 aagatgaggt agatggtatg actgaggaac caattcctga aagaagacct gaaatcactc 2580 cacctaagat ggttggcaca ggctttcaca ctttcagcct agatgatatt tccattacca 2640 aatggcctga aagaattcag gatttccaca catggatgct cactaaacaa ctggtggaaa 2700 gagaaccatt cttaatcctg tcagaattca cagcaagatt gtcaggaaca cttcgagaat 2760 ggtggaattc tgtaggacca gatgacaaaa acaggttctt gacttctcaa gacttcacat 2820 ggaatattag aatactttat tcttatttct gtggagatca aagtcaaaac aaggaagaac 2880 tcaggagaca aatcttcgag atgaagtgtt tgtcttatga caggaagaaa atagatcgtc 2940 atttccaaag aatgatcaag ctcttttatc acattggagg agatatttct ttaaagcaag 3000 ccttcatatc ttcccttccc cccattttat cagaaaggat ctctgccttg ataaaagaaa 3060 ggggtacttc agttacacaa atgcatgttg gagatattag gcaaacggct ttttacgtcc 3120 ttgatgatct ctgtagcaaa agaaaattct tcaaccaaat gaagaagatg tctagagatc 3180 tggaaaaagc atgcaccaaa tctgacctta ttattaaggg tgataaagga tgttcaggct 3240 attgtaatcc ttcaagaaga aggaaataca agcgcttcaa acttcctagc ttcaaggaac 3300 gagatggcag gcaatacagg aaaagaagga ggtttttcag aagaagcaaa acaagcaagg 3360 caatgaggca aaagcctaga tcttgtttta catgtgggaa aattggtcac ttctccagaa 3420 actgccccca aaacaagaag tcaataaaat tgatttctga aatccaaaag tatactggaa 3480 ttgatattga agatgacctg gagtccgttt tctcaattga ggatgaaccc agtgaggata 3540 cattattctc gctagagttt tatgaagaat atgcaggaga gcaataccag atcacttctt 3600 atgaagctcc aaaaacagaa aaccccccat tgcctaaaat ccacaccatt gttgaaatac 3660 cacaaacaga ggtcaagatc tacacctcta aatgggataa gcctatctca gtcattgctt 3720 tttatgatac aggagcggcc tattcaatta tggatccagc aattcttcca tctgaatatt 3780 ggattccgca tttcaggcac tttggaacgg ctgatgatgg tattttgaca accacagtca 3840 aaaccaagca tcccattaca attgaattct tcccaggctt caagtacact acaaaattgt 3900 tgggatcaga tattcctgga aaagatctgc tcattggatt tgatatctac agacagctta 3960 ataataagct tcgcattgga gcagatggaa tcagatggaa aaaccagttc aaaaggtata 4020 ctgagatacc acgacttttc cagttaacaa caagcaacga gcttcaacag cttgaggatg 4080 ttatcaaaaa tcaactctgt gcagattctc atgttgattt cctcagcaaa tgttctcatc 4140 cattatggct taatcaggat ttcttcatcc agctcccctt taaaaagaat gaaaacatca 4200 atcccacaaa ggcaagccat tctggaatga atccagaaca tctccagtta gcaataaagg 4260 aatgtgatga gcttcaacaa tttgatctaa tcgaaccctc tgattcacaa tgggcatgtg 4320 aagcttttta tgtcaacaag aggtcagagc aagtgagagg aaaattaagg ttagtcataa 4380 attatcaacc attaaaccat ttcctccaag atgacaagtt tcccattcca aataagctca 4440 cactcttctc tcacttatcc aaagcaaagc tcttttcaaa gtttgatctt aagtcaggat 4500 tttggcaatt aggaatccat cctaatgaga gaccaaaaac agggttttgc attcctgata 4560 gacattttca atggaaggtc atgccattcg gtcttaaaac agccccttct ttgttccaaa 4620 aagccatgat caaaatcttc cagcccatcc ttttttcagc tttggtctac attgatgata 4680 tccttctttt ttctgaaaca ctggaagatc acataaaatt gcttaaccag ttcataagtt 4740 tggttaaaaa atttggagtc atgttatcgg caaaaaagat gatccttgct caaaataaaa 4800 ttcaattctt aggaatggat tttgctgatg gaactttttc acctgctggt cacatctctt 4860 tggaactcca aaagtttcct gatacaaatc tctcggtaaa gcagatacaa caatttcttg 4920 ggattgttaa ttatatcaga gattttattc cagaggttac tgagcatatt tcccctctta 4980 gtgatatgct aaagaagaaa ccaccggcat ggggaaaatg tcaagacaat gcagtcaagc 5040 aattgaagca actggctcaa caagtcaaat cattacacat cccttctgaa ggaaagaaaa 5100 tacttcaaac tgatgccagt gatcagtatt ggagcgctgt actattggaa gaacataatg 5160 gcaaaaggaa aatctgtgga tttgcaagtg gaaaatttaa ggtctctgaa caacattatc 5220 actccacatt caaagagatc cttgctgtta agaatggaat taaaaagttt aatttcttct 5280 tgatccatac caactttttg gtcgaaatgg acatgagagc atttccaaag atgatcaggt 5340 taaatcctaa gattgttcct aattctcagt tgctacggtg ggcacaatgg ttttctccct 5400 accaatttga ggtaaaacat ttaaagggaa aggacaatat ccttgctgat ttcctatcaa 5460 ggccacatga attttcacaa aggcttaaga attcacccaa ggttcttatg tttcaaagga 5520 ggacaagatc aagctcaaca aaaagcaagg ctgactcaag ccaaagtaca ggatcaagtt 5580 ataaattatc tcataatctt cctgaaaacc ctccggaagt ttttaatcta gattatccat 5640 gggatacgtc tgtttttcta gaaagaagaa cattctatga actacaagtt ttcaagaaat 5700 atggaggatc tattttaagg ccttttggag ttgatccaga gtatccattt gctcacatct 5760 ttatacctaa tcctacagat ttctctgaag atttattatg gatgttttgg tatctgctca 5820 atcatttcca catcctcatg aaattcaggt gtagtaaatt cagcaagatt gatcaagtta 5880 atccatggat gttgaagttc ttattatggt tcaataatca taattattgg gcttcattat 5940 tcaagtgcat gaagggaata aagaaatatg tagtaatttg gttttacaga ccagtaaatt 6000 actaccaagg caagctttgt gctttacccc attcaagtat tgtgaagtgg aatcatgtct 6060 ccgttttaaa tgatgaagat gaatactctg agctacaaag attcattttt caagagaaca 6120 agtgtattcc gaaagaaata tggccaggat cctcaggcag ttggaattat ggaaattcag 6180 atcatcctca tggccaatgg attagagatg cacttaggga atatcgagaa atgaacgatt 6240 actttcaaga tgcacaagat ccatatcctg cttattctaa agttgatctc actcaagaag 6300 aactaaacac cttacgtatc acgcgatcgt atggtagtag ttctgaagat gcagatatgg 6360 tgaaaagaag tatttacaca gtccaatcca atatagtcaa ggattctcca agaaaaagaa 6420 aagggaaagc aaaatcaaga tcatccacca gaagcgaaaa aagaagagct aaaaacaaat 6480 gcaaatatcg gagtcttcat ggagaagatt ggtggattga attgggatat tctacaaagc 6540 catcaacccc ctcatggaca caggacagct catcagaacc atgtgtctaa agcatgcgtg 6600 aagaagataa gagggaatcc acttttcagt agtggtccta tgtgtctaaa gcatgcgtga 6660 agaagataag agggaatcca cttttcagta gtggcttatt actttaaata aagtttgtct 6720 agtctacttc tgtctttatt aaaagtaagg aatctcttgc tttttctatt atggcatttt 6780 gtaataatgc tctgtccact atcgagtctg tattattaag tgtgataagt gtgctgtcat 6840 gatgtaagtg cttacgtctt gagtcataga gattgcctat ataaggtaac ctcattagtt 6900 gttttcgatc agaaccaact ttcctttgta aaatattatc atcaataaaa tgtttgtgtg 6960 aataactctc tcttgtttcc aaactctcaa aatggtagtt cgatcctaat attaaattga 7020 aggtgattac tctataagag tgattactga agatagtagg tcagattaag gttattgact 7080 tggtattatg gctgtatggt gccgtgttaa agcccagtag tctaacaaaa catctgatct 7140 agttatcctc agtttaatca gaattctctt ataggttcaa tcttataatt cctccatatc 7200 tcgtat 7206 //