ID U94887; SV 1; linear; genomic RNA; STD; VRL; 3965 BP. XX AC U94887; XX DT 17-MAR-1998 (Rel. 55, Created) DT 24-MAR-2010 (Rel. 104, Last updated, Version 3) XX DE African horsesickness virus segment 1 RNA-dependent RNA polymerase (VP1) DE gene, complete cds. XX KW . XX OS African horse sickness virus OC Viruses; Riboviria; Reoviridae; Sedoreovirinae; Orbivirus. XX RN [1] RP 1-3965 RX DOI; 10.1007/s007050050298. RX PUBMED; 9541625. RA Vreede F.T., Huismans H.; RT "Sequence analysis of the RNA polymerase gene of African horse sickness RT virus"; RL Arch. Virol. 143(2):413-419(1998). XX RN [2] RP 1-3965 RA Vreede F.T.; RT ; RL Submitted (21-MAR-1997) to the INSDC. RL Biochemistry, Onderstepoort Veterinary Institute, Zoutpan Road, RL Onderstepoort, Gauteng 0110, South Africa XX DR MD5; 531bdba4188bb8736a33a1c311ee7e81. XX FH Key Location/Qualifiers FH FT source 1..3965 FT /organism="African horse sickness virus" FT /segment="1" FT /serotype="9" FT /mol_type="genomic RNA" FT /note="AHSV-9" FT /db_xref="taxon:40050" FT gene 14..3931 FT /gene="VP1" FT CDS 14..3931 FT /codon_start=1 FT /gene="VP1" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:O70695" FT /db_xref="InterPro:IPR007097" FT /db_xref="InterPro:IPR008723" FT /db_xref="UniProtKB/Swiss-Prot:O70695" FT /protein_id="AAC40586.1" FT /translation="MVITVQGADLVRRALNRLFKYGRIDGTKMYYEYYRYSSKMRETRR FT KKGTKYKTDDEFLERERDAGRLKLYDLQVIREASWEDLLYENVHTAELDIYVRSILKLE FT DLEPEEEFLRNYAVYDGVHPLKDFVEMRAKNEMQIFGDMPIKAWISVLMEISRETKHKP FT LGLMVASDFVGRFGSPFEQNFRDLSQINEYGYCYSSPLLFEMCVTESILEFNMWYRMRE FT ERIQSLKFGLEVIDPFKLIREFFEICLPHPKKINNTLRSPYSWFVKNWGIGCSRVKVLT FT SIGGEDRNSKEVFYTGYHETENLYSEIVLKSKFYRESLKQNMTKTEEAITYSQKLGNHG FT RTMPIFLKMLKAVYTTEFDPTKISHVILASLCLSIQTITGYGRAWVVNKSSDLEAQMKP FT SSDNYVQRVCDYTKNNFIKAYEEARRGGEEIVMPEDMYTSILRLAKNTSSGFSTSIDVF FT KRYGPNAKGGRGEKIQITSRIKALVIFTKGHEIFTPKNLALKYNTTEFFQTKGSRDVPI FT KSTRIVYSINLSILVPQLIVTLPLNEYFARAGGSTLPETQRMGGKIIVGDLEATGSRVM FT DAADTFRNSSDPLNLTIAIDYSEFDTHLTPYNFRNGMLDGIREAMRRYQHLRYEGYTLD FT ELIEFGYGEGRVMNTLWNGKRRVFKVAFEDYVMLSDEDKVQGTFKPPIGVKPVKNIKIC FT EELEKKADGRDLILVSPTDGSDLALINTHLSGENSTLIANSLHNLAIGTVIREEVKRIF FT GDDISFKSEQYVGDDTLFYTELRTRSVERFDSIVDTIFEVIKKSGHEASMSKTLIAPFS FT VEKTQTHAKQGIYIPQDRMMLVSSERRKDIEDVAGYLRSQVQTLTTKISRGFSHELAQI FT IFMMKSSIIGHRKLKRTIKDGGYRDRKYDDDKEDGFTLIMLRDPLIAFYPVEWNGFGAH FT PAAMNIIMTEDMFVDSVMRGECRAWMEPLVKLIDQSPPLWNETSADKRMIGTDSTMSFF FT SRMARPAVRTVLTNSEVGDAVRSLPLGDFSPFNISKTMMHSALLKEKNARSLLTPAYEM FT EYQKELQGWRPRQKKFLVTSNEMEITTNYMKMFNVGKIPLHGLALKFFPDVNLSKEFFL FT QKSVLGNRESPRARMSYVDRIDSILRGDVVMRGFITANTIINILEKLGHTHSASDLTTL FT FEIMNLSSSVAQRLSEYITTERVRFDAMKLSKRGICGDEFSMSLDVCTQTMVDRYIRAP FT TQFTKTELDAVNLYVAQHIMLDAATGLTPSRYDINVSGDERVRFKQRVARFNTHLPKMR FT MVKRLIETERLSARLVQNQFV" XX SQ Sequence 3965 BP; 1253 A; 628 C; 983 G; 1101 T; 0 other; gtttatttga gcgatggtca tcaccgtgca aggtgcagat ctagtcagga gggctttaaa 60 tcgattattt aagtatggga ggatagatgg aactaagatg tattatgaat attacagata 120 ttcaagtaaa atgagggaga ctaggaggaa aaaagggacg aagtataaaa cagatgatga 180 gtttttagag cgcgagaggg atgcggggag gttgaagctt tatgatctac aagtgatacg 240 ggaagcgtct tgggaagatt tgttgtatga aaatgttcac actgctgagt tagatattta 300 tgttagatca atcttgaaat tagaggactt agagccagaa gaagaatttt tgcgaaatta 360 cgcagtttat gatggtgtgc acccgctgaa ggatttcgtt gaaatgagag cgaaaaatga 420 aatgcagatt tttggtgata tgcccattaa ggcgtggatc tcagtattga tggaaatctc 480 gcgcgaaaca aagcataaac ctcttgggtt aatggtagct tcggattttg tcggaagatt 540 tggttcgcct tttgaacaga attttagaga tttgtcacag attaacgaat atggttattg 600 ttactcaagt ccattattat ttgagatgtg tgtaactgag tcaattttgg aatttaatat 660 gtggtaccgg atgcgtgaag aaagaataca gtcgctgaaa ttcggattgg aagtgattga 720 tcctttcaaa ctgatacgag aattttttga aatatgtttg ccgcatccta agaagataaa 780 caacacgttg cgctcaccgt attcgtggtt tgtcaagaat tggggtattg gatgttcgag 840 agtgaaggtt ttaacatcga ttggaggtga ggatcggaat tcaaaggaag ttttttatac 900 tggttaccat gaaacagaga acctatactc agagattgtc ctgaaatcga aattttatag 960 agaaagcttg aaacaaaata tgacgaaaac ggaagaggcg attacgtatt cgcaaaaact 1020 tggcaatcat gggagaacga tgcccatttt cctgaaaatg ttaaaagcgg tatatactac 1080 agagtttgat ccaacaaaaa taagtcacgt tatattggcg tcattatgct taagtataca 1140 aacaataaca ggatatggga gggcatgggt agttaacaaa tctagtgatt tggaagcgca 1200 gatgaaacca agtagtgaca actatgtaca gcgcgtatgc gattatacaa aaaataactt 1260 tataaaagcc tatgaagagg cgaggcgagg gggtgaagag attgtaatgc ctgaagatat 1320 gtatacatcg attttacgtc tcgctaaaaa tacaagctcg ggtttctcaa ctagtattga 1380 tgtttttaag cggtatggcc ccaacgcgaa gggtggacgt ggagaaaaga ttcaaattac 1440 gtcgcggatt aaagcgttag tcatttttac aaaaggtcat gaaatattta cgccaaaaaa 1500 cctagcttta aagtataaca ctactgaatt tttccaaacg aagggttcga gagatgttcc 1560 gattaagtcg acgagaatag tgtattccat caacctctca attttagttc cgcagctcat 1620 agtgacatta cctttgaatg agtattttgc aagggcggga ggaagtactt tacctgaaac 1680 tcaacgtatg ggtggaaaaa ttatcgttgg agatttggag gctacaggat cgcgtgtgat 1740 ggacgcagct gatacattta ggaattcttc agatccactt aacttaacta tcgcgattga 1800 ctacagcgaa tttgatacgc atttaacacc ttataatttc aggaacggga tgctagatgg 1860 tatacgagaa gcgatgcgca gatatcaaca tctgagatat gagggttata cattagacga 1920 attaatagag tttggatatg gagagggtcg cgtaatgaat acattatgga atggaaagag 1980 gcgagtgttt aaagtggcgt ttgaggatta cgttatgttg agtgatgaag ataaagttca 2040 gggaaccttt aaaccaccca ttggggtgaa gccggtaaag aatattaaaa tttgtgaaga 2100 gctggagaaa aaggcggatg gccgtgattt gattttggtt tcgcctacgg atggaagcga 2160 cctagcgctg attaacactc atttatccgg ggagaactcc acgttgattg cgaacagttt 2220 acataatcta gcgattggaa cagttattcg tgaggaggtt aaacgcattt ttggcgatga 2280 tatttcattt aaatcagaac agtatgttgg tgacgacacc ttattttaca ctgaattgag 2340 aacgcggtca gttgagcggt tcgattcaat cgtggatacg atttttgaag tcattaagaa 2400 gagtggccac gaagcctcaa tgtcaaaaac tcttatagct cccttttcgg tcgagaaaac 2460 acagacgcac gctaagcagg gaatatatat tccacaggat cgaatgatgc tagtttcgtc 2520 cgaacgaaga aaagatatag aggatgttgc tgggtacctg agatctcaag ttcaaacgtt 2580 gacaacaaaa attagtcgtg gtttctcgca tgagctggcg caaatcattt ttatgatgaa 2640 atcgtcgatt atcgggcata ggaaactaaa gaggacaatt aaggatggag gatatagaga 2700 tagaaaatac gatgatgaca aagaggacgg cttcactctg ataatgttgc gagatccgct 2760 tattgctttt tatcccgttg aatggaacgg ctttggagcg cacccggcag cgatgaatat 2820 aataatgact gaagatatgt tcgtagactc agtgatgaga ggggaatgta gagcgtggat 2880 ggaaccctta gttaagttga ttgatcaatc tcctcccttg tggaacgaaa cgagcgcgga 2940 taaaagaatg attggtacgg atagtacgat gtcttttttc tcgagaatgg caaggccagc 3000 ggtacgaacg gtattaacca actctgaggt gggagatgcc gtaagaagtt tgcctctggg 3060 agatttctct cctttcaata tctctaaaac tatgatgcat tcggcgttat tgaaagaaaa 3120 gaatgcccgt tcattactta ccccagcgta tgagatggag tatcaaaaag agttgcaagg 3180 ttggagacca aggcagaaaa agttcttagt tacgtctaac gagatggaaa ttactacaaa 3240 ttatatgaag atgtttaacg ttggtaaaat tccactgcac ggtttggcgt tgaagttttt 3300 cccagatgtt aacttgtcga aagaattttt cttacagaag agtgttttag ggaatagaga 3360 gagtccgaga gcacgaatgt catacgtcga tagaattgac tcaatactac gtggcgatgt 3420 cgtaatgcga gggtttatca ctgcgaatac tattatcaac atattggaga aattagggca 3480 cacacattcg gcgagtgact taaccacatt atttgagata atgaatttgt catcaagcgt 3540 cgctcagagg ctatcagagt acatcacgac cgaacgcgtt cgcttcgatg ccatgaaact 3600 ctcgaagagg ggtatatgtg gtgatgaatt ctcaatgtca ttggatgttt gcacacaaac 3660 gatggtagat agatatatac gtgcgccgac gcagttcact aagacggagc ttgatgccgt 3720 aaacctatat gttgcccaac atattatgtt agatgcagcg actggattga cgccatcacg 3780 atatgatatt aatgtgtctg gagacgaaag ggtgcgattt aagcagcgtg ttgcccgatt 3840 taacacacac ttgcctaaga tgcggatggt taaaagattg attgaaacag aaaggttgtc 3900 cgcgagattg gttcagaacc agtttgtctg attagaacta gcacccctca gctcaaaaca 3960 cttac 3965 //