ID U90320; SV 1; linear; genomic DNA; STD; PLN; 4603 BP. XX AC U90320; XX DT 03-APR-1997 (Rel. 51, Created) DT 14-FEB-2020 (Rel. 143, Last updated, Version 4) XX DE Volvox carteri f. nagariensis retrotransposon Lueckenbuesser, complete DE sequence. XX KW . XX OS Volvox carteri f. nagariensis OC Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-4603 RA Koehl G., Putz E., Schmitt R.; RT ; RL Submitted (21-FEB-1997) to the INSDC. RL Lehrstuhl fuer Genetik, University of Regensburg, Universitaetsstr. 31, RL Regensburg D-93050, Germany XX DR MD5; ea8485db55724dd807d241e00c07a14d. XX FH Key Location/Qualifiers FH FT source 1..4603 FT /organism="Volvox carteri f. nagariensis" FT /strain="UTEX 1885 (HK10)" FT /mol_type="genomic DNA" FT /note="contains ICTV exemplar Volvox carteri Lueckenbuesser FT virus; forma: nagariensis" FT /db_xref="taxon:3068" FT mobile_element 1..4603 FT /mobile_element_type="transposon:Lueckenbuesser" FT /note="copia/ty1 like retrotransposon" FT repeat_region 1..185 FT /rpt_type=LONG_TERMINAL_REPEAT FT repeat_region 1..2 FT /rpt_type=INVERTED FT /note="5'IR" FT regulatory 138..142 FT /regulatory_class="polyA_signal_sequence" FT regulatory 145..149 FT /regulatory_class="TATA_box" FT repeat_region 184..185 FT /rpt_type=INVERTED FT /note="3'IR" FT CDS join(327..3153,3153..4378) FT /codon_start=1 FT /ribosomal_slippage FT /product="reverse transcriptase, gag, polyprotein" FT /db_xref="GOA:O04013" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR013103" FT /db_xref="InterPro:IPR025724" FT /db_xref="InterPro:IPR036397" FT /db_xref="InterPro:IPR039537" FT /db_xref="UniProtKB/TrEMBL:O04013" FT /protein_id="AAB51275.1" FT /translation="MAEQSKRVPKLESIADYPQWEPRARNALILDGYWDVVNSAPITSV FT EKGLMAKAALIMMVGDKFLQEIDQCATSAAGWAYLKKIHSENQKGHQLLYDAQIRSLKK FT GNDERVEDYVKRTIQLRTKLKDSGFDYPENITVKLMLDGLPPSFQHFVQQYTATGSLDK FT LTFDGILPLLVTEEARQASEITQERVGALVGRMHATDNVNRQRWQPGTQPTQQEGCWKC FT GAPDHIKRNCPQLYQNQGGNPRPHFGGGGRHPNKFGLFAAALSATTEVCGIKGVPQWYI FT DSACGLHLTGCKEDLDDYVRVDDGPQIQALKGASLKAEGYGSVKLLTNVDGSEYTLEVE FT QVWYVPGADFRLISASELDKKGYSMEIRDGQLNLYVTVKVPERMIRFLGVRPYGHRFLN FT PLALNKPLVHRMRIATASLVAGGTYLLDATCPKYNRALAVMKDSVELWHRRFGHLGYRG FT LEQLASEGMVDGLPVTAKQFKEAARHSIVASHASRATRACIAPIIKSHLDLPLSEFILT FT CVKMPHFSLGGARYAVRFLDEFSSFSVVRTVNSKDQVAQVVKDALLLLENQTGRRVREI FT VSDRGREYVNVKLRAFFAERGIRHNISAPYTPEQNGRAERLNRTLLEKVRAMLQESGLG FT NEFWAEAFRTANAVRNCSPVSNKNATPHELLFGYKPDVSVLRVFGCTAWVYEERQHRTK FT LDPVSRKGIFVGYDSMDNYRIYLPEDGKVVVSCNVKFDESKGGSVVNVHAKDDGKSVSA FT SSVSDTRKLLEDADQDEDAVGLADDAGDETAEDAGDESAEDAGEQVADADAPAGEISNP FT PVASTSGLRRSTRDRKAPERLIAAAAILSPNPTSFQEAIKSPQADMWWEAMEEEIASLH FT RLGTWRLEHPPPDANVVPGRWVYKVKSGADGEVERYKARFVAKGYMQVEGVDYDEVFAP FT TSNHATVRAFSPKAAAKGIEVHHLDVRTAFLHGDLDEVVYVDQPEGFVTGERGLKCRLL FT KALYGLRQASRAWYVKLVNKLREMGYTVSDADPGLFIKCQGTDVVELLIHVDDLLIGSD FT SKDLIAQSRRTGEGFDCVIRRGLVLFWDGGMRDKPPGPLKISQKKYAAELVARFDMADA FT KSAAIPMEPSLVLRREPVDEELLLDASKFRSLVGGLMYLAVCTRPDIAQAVYKLARFMS FT KPAVISHWEAAKSVLRYVKSTLAYGIVFCGSQSLVGYADSDWPSDPDSRRSTGYVFILN FT GGAISWKSRLQPTVAASSVEAEYMAAASATREAVWLRKLMRDLGYEVRAVEIKDDSQGA FT IALIRNPITSERSKHIDVIHHFVREKESSGSVSFQYCPSHDMVADVLTKPLALVKFSKF FT RECMGVR" FT misc_feature 981..1022 FT /note="encodes DNA-binding domain" FT misc_feature 1164..1196 FT /note="encodes protease domain" FT misc_feature 2052..2195 FT /note="encodes endonuclease domain" FT misc_feature 3153 FT /note="postulated frameshift (-1)" FT misc_feature 3179..3204 FT /note="encodes RT conserved region I" FT misc_feature 3233..3265 FT /note="encodes RT conserved region II" FT misc_feature 3431..3469 FT /note="encodes RT conserved region III" FT repeat_region 4419..4602 FT /rpt_type=LONG_TERMINAL_REPEAT FT repeat_region 4419..4420 FT /rpt_type=INVERTED FT /note="5'IR" FT regulatory 4556..4560 FT /regulatory_class="polyA_signal_sequence" FT regulatory 4563..4567 FT /regulatory_class="TATA_box" FT repeat_region 4601..4602 FT /rpt_type=INVERTED FT /note="3'IR" XX SQ Sequence 4603 BP; 1085 A; 1037 C; 1337 G; 1144 T; 0 other; tgttgatatc tcgtccagaa ctcctgcata tcgtagtttg gcgggatacc tgtactggtt 60 ctggagcgga tttccgagat acactttgta tttatggcag ggtcttgcct tttatcctcg 120 ctctaatccc agacctatgt aacgtataac gaggtgatcg ctctgtattc gctgcttagt 180 tttcaggtta tgagccccgc gcaaggatag tgtcgcggtc tgccggaacc agccaactgc 240 gggattgcag tctcaggata agagcggctc tggtacattt gagcctggct gcaggcaggg 300 aggctacata cagccggatt tgcgaaatgg ccgaacaatc gaagcgggtc ccgaagttgg 360 agtcgatcgc cgactacccg caatgggagc cgagggcaag aaatgccctg attctggatg 420 gttattggga tgtagtcaac tctgctccta ttacctctgt cgagaaaggt ttaatggcga 480 aggccgcgct gatcatgatg gtcggcgaca agttccttca ggagattgat cagtgtgcga 540 catcagctgc tggatgggca tatctgaaga agatccacag cgagaatcag aaagggcacc 600 agctactcta cgacgcacaa atacgcagcc tcaagaaggg taacgatgag cgcgtcgagg 660 attacgttaa gcgcaccatt cagctgcgta ccaagctcaa ggattcgggt ttcgactacc 720 cggagaacat cactgtcaag cttatgctag acggcctgcc gccgagtttc caacacttcg 780 ttcaacaata cacggcgact ggcagcctgg acaagctgac ttttgatggc atactgccac 840 tcctggtcac ggaggaggca cgccaagcga gcgagataac ccaagaacgg gtaggggcgc 900 tggtaggaag aatgcacgcc acggacaacg tcaaccgtca gcggtggcaa ccaggtactc 960 aaccaacaca acaggagggt tgctggaagt gcggagcacc agatcacatc aagagaaatt 1020 gccctcagct ctaccaaaac caagggggga acccaaggcc ccacttcggt ggaggtggcc 1080 gccatcccaa caagtttgga ttgtttgcag ccgctttatc tgcaactacg gaggtgtgcg 1140 gtatcaaggg tgtaccgcaa tggtacattg attctgcgtg tggcctgcat ctgactggct 1200 gcaaggagga cttggatgac tacgttcgag tggacgatgg cccccaaatc caggcgctca 1260 agggtgcatc actgaaggcc gagggctatg gaagcgtgaa gctcctgaca aacgttgatg 1320 gctctgagta cacgttggag gtcgagcaag tatggtatgt cccgggtgca gactttcggt 1380 tgatatcagc aagtgagctt gataagaagg ggtacagtat ggagattcgg gatggccagt 1440 tgaacctcta tgttacagta aaagttcccg agaggatgat taggtttctg ggcgtgcgac 1500 cttatggcca taggtttctc aatcctcttg ccttgaacaa acctttagtt caccggatgc 1560 ggatcgcaac agcttcactt gttgctggcg gcacatactt gctagacgcc acttgcccta 1620 agtacaacag ggctctggct gtcatgaagg attcagttga gctgtggcat cgccgttttg 1680 ggcaccttgg ataccgtggg ctagagcagc tagctagcga aggaatggta gacggtttac 1740 cggtgacggc aaagcagttt aaggaagctg ctaggcacag catagttgcg agccatgcat 1800 cacgagcaac acgtgcgtgc atcgcaccca tcatcaaatc gcatctcgat ttgcccttga 1860 gcgagttcat actgacgtgt gtgaaaatgc ctcatttttc tttaggtggt gccaggtatg 1920 ccgtcaggtt cttagatgag ttctcgagtt tcagtgtggt gcgcactgtg aactcgaagg 1980 accaagttgc gcaagttgtt aaggatgcgt tattgctttt agaaaatcaa accggtaggc 2040 gcgtgcgcga aattgtctct gaccgtggtc gtgaatacgt caacgtaaag ttacgtgctt 2100 tctttgccga aagagggatt aggcacaata tttcagctcc gtatacaccg gagcagaatg 2160 gtcgtgcgga acgtttgaac cgtacccttt tggaaaaggt acgtgccatg ttacaggaat 2220 ccggtctagg taatgagttc tgggctgagg ctttccgtac ggccaatgct gtacgcaact 2280 gctctccagt cagcaacaag aacgctactc cacatgaact tctttttggc tacaaaccgg 2340 acgtatcggt tttgcgcgtt tttggctgca cggcatgggt gtatgaagaa aggcaacacc 2400 gcactaagtt ggatccagta agtcggaagg gaattttcgt tggctatgac agcatggaca 2460 attaccgcat ttacctacct gaagacggca aggttgttgt gtcgtgcaac gtaaaatttg 2520 acgagtcaaa ggggggtagt gtggtgaatg tgcatgccaa ggatgatggc aaatctgtct 2580 cagcttcttc tgtttctgat acaagaaagc tcttagagga tgccgaccag gatgaggatg 2640 cagtaggtct ggctgatgat gcgggggatg agactgcaga agatgcgggg gatgagagtg 2700 ctgaggatgc gggggagcag gtggccgatg ctgatgcacc tgcgggggag atatcaaatc 2760 ctccagttgc atcaacatca ggcctacgga gaagtactag ggaccgtaag gctcctgagc 2820 gactgattgc agcggcagca atcctttcac ccaatcccac gtcatttcaa gaagccatca 2880 agtcaccgca ggccgatatg tggtgggagg caatggagga ggaaatcgca tcgctgcacc 2940 gcctaggcac ttggcgttta gagcacccgc ccccggacgc caacgttgta ccaggccgtt 3000 gggtctataa agtaaagagt ggcgccgatg gtgaggtaga acgttataaa gcccgttttg 3060 ttgcaaaagg atatatgcaa gtagagggcg tggactatga tgaagttttt gctccaacaa 3120 gcaatcatgc taccgtacgc gccttctctc caaagctgca gccaaaggaa ttgaggtcca 3180 ccatctcgac gtccgcacag catttttgca tggcgatttg gatgaggtag tttacgttga 3240 tcagcctgaa ggttttgtga ccggcgagcg tggtctaaag tgtcggttgt tgaaggcgtt 3300 gtacggctta cggcaagcca gccgggcttg gtatgttaaa ttggtaaata agctacggga 3360 aatgggctac acggtctcag acgcggaccc cggcttgttt atcaagtgtc aaggcactga 3420 cgttgttgag ttgcttatcc atgttgacga tctgttgatt gggagtgact ctaaggatct 3480 aatagcccag tcaagaagaa ctggcgaagg attcgattgc gtgattaggc gcggtctcgt 3540 acttttttgg gatggaggta tgcgtgataa accgccggga ccccttaaaa tatcgcaaaa 3600 gaagtatgca gcggagttgg ttgcaaggtt tgatatggcc gatgctaagt ccgcggctat 3660 tcctatggag ccgtcattag tattgcggcg ggagcccgtt gatgaagaac tgttgctgga 3720 cgctagcaag tttcgatctt tggttggtgg tttaatgtac cttgcagtct gtacaaggcc 3780 tgatatcgcg caggctgtct ataaactcgc acgttttatg tcgaagcctg ccgtcatttc 3840 acattgggag gctgccaagt ccgtcttgcg gtacgttaag agcacattag cgtatggtat 3900 tgttttttgc ggttcgcagt ctttggtggg gtatgcggat tctgactggc ccagtgatcc 3960 agatagtcgg cgatccaccg gctatgtctt tattctgaat gggggcgcca taagttggaa 4020 gagcaggcta caacctactg tcgctgcatc gtcggttgaa gccgagtaca tggctgctgc 4080 gtcagcaacg cgggaggcag tttggttgcg taagttgatg agggatttgg gctacgaggt 4140 acgggccgtt gagatcaagg acgatagtca aggtgctata gccctgatcc gcaaccccat 4200 cacgtcagag cggtcaaagc acatagacgt gatccaccac tttgttcgag aaaaggagag 4260 ttcgggtagt gtatcgttcc agtattgccc ttctcacgat atggttgcag atgtgctgac 4320 gaagccgttg gctttggtca agttttcgaa attccgagag tgcatgggag ttcgttgagt 4380 tttctctggg gtgtgccaga gttctgtccg cgggggagtg ttgatatctc gtccagaact 4440 cctgcatatc gtagtttggc gggatacctg tactggttct ggagcggatt tccgagatac 4500 actttgtatt tatggcaggg tcttgccttt tatcctcgct ctaatcccag acctatgtaa 4560 cgtataacga ggtgatcgct ctgtattcgc tgcttagttt tca 4603 //