ID U89894; SV 1; linear; genomic RNA; STD; VRL; 6611 BP. XX AC U89894; XX DT 07-MAY-1997 (Rel. 51, Created) DT 04-APR-2012 (Rel. 112, Last updated, Version 4) XX DE Odontoglossum ringspot virus polyprotein, 30 kDa protein, and coat protein DE genes, complete cds. XX KW . XX OS Odontoglossum ringspot virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 4230-6436 RX DOI; 10.1006/viro.1993.1107. RX PUBMED; 8438560. RA Hilf M.E., Dawson W.O.; RT "The tobamovirus capsid protein functions as a host-specific determinant of RT long-distance movement"; RL Virology 193(1):106-114(1993). XX RN [2] RP 5563-6182 RX DOI; 10.1073/pnas.90.5.2055. RX PUBMED; 8446627. RA Culver J.N., Lehto K., Close S.M., Hilf M.E., Dawson W.O.; RT "Genomic position affects the expression of tobacco mosaic virus movement RT and coat protein genes"; RL Proc. Natl. Acad. Sci. U.S.A. 90(5):2055-2059(1993). XX RN [3] RP 1-6611 RA Dawson W.O.; RT ; RL Submitted (18-FEB-1997) to the INSDC. RL CREC, University of Florida, 700 Experiment Station Road, Lake Alfred, FL RL 33850-2299, USA XX DR MD5; 0ddd4b422bb8b5407944accdc6f0b11a. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01083; UPD-PK2. XX FH Key Location/Qualifiers FH FT source 1..6611 FT /organism="Odontoglossum ringspot virus" FT /host="Cymbidium sp." FT /lab_host="Nicotiana tabacum" FT /mol_type="genomic RNA" FT /db_xref="taxon:12238" FT CDS 63..4901 FT /codon_start=1 FT /transl_except=(pos:3399..3401,aa:OTHER) FT /product="polyprotein" FT /function="replication" FT /note="contains a readthrough stop codon" FT /db_xref="GOA:O10447" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O10447" FT /protein_id="AAB53794.1" FT /translation="MAHFQQTMNNKVIEAGMGRNSLINDLAQRRVYDNPVEELNHRSRR FT PKVNFSKVISQEQIIQATNAYPEFEITFYNTQLAVHSMAGGLRALELEYLMMQIPFGSI FT TYDIGGNFSAHLYKGRDYVHCCMPNLDIRDVARHINQQDTVSTYLARLERSKRGLPVFQ FT QSAFNKYMNDPDAVCCDKRFQDCSYSVDLPGKTYAVGLHSIYDIPADEFGAALLRKDVH FT ICYAAFHFSENLLLETTSAPLDEIGATFYKSGDRLSFFFQNESTLNYEHSYKNVIKYVC FT KTFFPASNRFVYHKEFMCTRVNTWFCKFTKVDTYFLFRGVYTRGEDSEQFYTAMDEAWE FT YKKTLAMLNSERTIFRDRAAVNFWFPKVKDMVIVPLFDGSVTSGKMKRSEVMVNKDFVY FT TVLNHIRTYQDKALTYKNVLSFVESIRSRVIINGVTARSEWDVDKSVLQPLSMTFLLQT FT KLAEAKDQVVLKKFQKFDDTVTNLFWKQISDAVGDLFPSIKERLISGGFVKVAEQSLQI FT KTPDEYITFADKLVMEYKATEELQHLDISKPLERAEKYYNALSELSVLKESDEFDITQF FT KNLCEEKDIAPDVLAKVIVPIMKNELTLPFKNPTPEALSDALSPLPKDLDMRFSLLKLS FT TCAPFPSVKTLDSGLLPKQSYGDERQFESQSVVSVSDFHLKSVESVKMKSMSSAVYTGP FT LKVQQMKNYMDYLSASISATVSNLCKVLKDVYGVDPESAEKSGVYDVVKGKWLLKPKDK FT CHAWGVAELNNGEKVIVLLEWADGFPICGDWRRVAVSSDSLIYSDMGKLQTLLSCLKDG FT EPVLRMPKVTLVDGVPGCGKTKEILETVNFDEDLILVPGKEACKMIIKRANKSGHVRAT FT KDNVRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFI FT NRVANFPYPKHFGHTCLHHREVRRLSLRCPADVTHFMNSKYDGKVLCTNDVIRSVDAEV FT VRGKGVFNPKSKPLKGKIITFTQSDKAELNERGYEEVSTFGEINTVHEIQGETFEDVSV FT VRLTPTPLELISKSSPHVLVALTRHTKSFKYYSVVLDPLVKVCSDLSKVSDFILDMYKV FT DAGILXQLQVGSIFKGENLFVPCPKSGYISDMQFYYDTLLPGNSTILNEYDAVTMNLRE FT NNLNVKDCTIDFSKSVSVPRQQQEFFTPVIRTAAERPRSAGLLENLVAMIKRNFNSPDL FT TGILDIEDTAELVVNKFWDAYIIDELSGGNVTPMTSDAFHRWMAKQEKSTIGQLADFDF FT VDLPAIDQYKHMIKGEPKQKLDLSPQDEYAALQTIVYHSKQINAIFGPLFSELTRQLLE FT RIDSSKFLFYTRKTPEQIEEFFSDLDSTVPMEVLELDISKYDKSQNEFHCAVEYLIWEK FT LGLNGFLEEVWKQGHRKTSLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIAACLASMIP FT MDKVIKAAFCGDDSILYIPKGLDLPDIQSGANLMWNFEAKLYRKRYGYFCGRYIIHHDR FT GAIVYYDPLKLISKLGCKHIKSLDHLEEFRISLCDVSSSLNNCAYFGQLNDAIAEVHKT FT AVNGSFAFCSIVKYLSDKNLFRTLFYNGSSTKG" FT mat_peptide 63..3401 FT /product="helicase" FT /function="replication" FT misc_feature 3399..3401 FT /note="readthrough stop codon" FT mat_peptide 3402..4895 FT /product="RNA replicase" FT /function="replication" FT CDS 4879..5718 FT /codon_start=1 FT /product="30 kDa protein" FT /function="movement" FT /db_xref="GOA:O10448" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:O10448" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAB53795.1" FT /translation="MALVLRDSIKISEFINLSASEKLLPSALTAVKSVRISKVDKIISY FT ENDTLSDIDLLKGVKLVEIGYVLVAGLVVTGEWNLPDNCKGGVSICLVDKRMKRANEAT FT LGSYHTSACKKRFTFKIIPNYSVTTADALKGIWQVMTNIRGVEMEKGFCPLSLEFVSIC FT VVYLNNIKLGLREKILNVTEGGPTELTEAVVDEFVRKFPMAARLKSFRSVNKKKPSNSS FT KFVNGKSRLNSRNKLNYENGDSDVGISVVDDIVVGNGVSDIRIDHHCESFDAQSDSY" FT CDS 5721..6197 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:O12854" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:O12854" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAB53796.1" FT /translation="MSYTITDPSKLAYLSSAWADPNSLINLCTNSLGNQFQTQQARTTV FT QQQFADVWQPVPTLTSRFPAGAGYFRVYRYDPILDPLITFLMGTFDTRNRIIEVENPQN FT PTTTETLDATRRVDDATVAIRSAINNLLNELVRGTGMYNQVSFETMSGLTWTSS" XX SQ Sequence 6611 BP; 1972 A; 1174 C; 1421 G; 2044 T; 0 other; gtattgttcg attactacaa ttacaacaaa caattacaac aaaattcaca attcacatca 60 acatggcaca cttccaacaa acaatgaaca acaaagttat tgaggctggt atgggcagaa 120 acagcctcat taacgatttg gctcagagac gtgtttacga taaccctgtc gaagagttaa 180 accaccgttc tagacgccca aaggttaact tttccaaggt catttctcag gaacagatta 240 ttcaagctac taatgcgtac cctgagtttg aaatcacctt ttacaacact caactcgctg 300 tccactcgat ggcgggaggt cttcgagcac tcgagctcga gtatcttatg atgcaaatcc 360 catttggttc tattacgtat gacatcgggg gaaacttttc agcgcactta tataaaggac 420 gagattacgt ccattgctgt atgcctaatc ttgacattcg cgatgtggct cgtcacatca 480 atcaacaaga tactgtttct acttatctgg ctaggctcga gagaagcaag aggggtcttc 540 cggtttttca gcaatcagct tttaataaat atatgaatga ccctgatgct gtgtgctgcg 600 ataaaaggtt tcaagactgt tcttactccg ttgatcttcc gggaaaaaca tacgctgtgg 660 gccttcatag tatctatgat attccagcgg atgagttcgg agctgcctta ttacgaaagg 720 atgttcacat atgttatgct gcttttcatt ttagtgagaa tctgcttctt gagactacgt 780 ctgctccgct cgatgagatt ggagcgacgt tttacaagtc aggggatagg ttatccttct 840 tctttcaaaa tgagagcaca ttgaattatg aacactctta taaaaacgta attaaatatg 900 tttgcaagac tttttttcca gcttcaaata ggtttgtcta ccataaggaa tttatgtgca 960 ccagagttaa cacatggttt tgtaagttca ccaaggtaga tacttatttc cttttccgag 1020 gggtgtatac taggggagaa gattctgaac aattttacac tgctatggat gaagcatggg 1080 agtataagaa aactttggca atgcttaata gcgaaaggac gatctttcgc gatcgcgctg 1140 cggttaactt ttggtttcct aaagttaagg atatggttat tgtgccgctt tttgatggtt 1200 ccgtcacttc aggaaagatg aaaagaagtg aagtcatggt taacaaggat tttgtttaca 1260 ccgttttaaa tcacatccgt acctatcaag acaaagcctt gacgtataaa aacgttcttt 1320 cctttgtcga gtcaattagg tctcgtgtga ttattaatgg tgtgactgca agatctgagt 1380 gggatgtaga caagtctgtg ttacagccgt tatctatgac ttttctttta cagacgaagt 1440 tggctgaagc aaaagatcaa gtcgtactta aaaaatttca aaaatttgac gatacagtta 1500 ctaatctttt ctggaaacag attagtgatg ctgtaggcga tctcttcccg tcgattaagg 1560 aaaggctcat tagcggtggg tttgtaaaag ttgctgagca atctttacaa attaaaacgc 1620 ctgatgagta tatcaccttt gcagataaac tggttatgga atataaagca actgaagagc 1680 ttcaacatct agacattagt aagcctcttg agagagccga gaaatattat aatgctttat 1740 cggaactatc ggttctcaag gaatctgacg agtttgatat aacgcaattc aagaatttat 1800 gtgaagaaaa ggacattgct ccagacgtcc tggcgaaagt gatcgtaccc atcatgaaga 1860 acgaactcac actgcctttt aaaaatccaa cgcctgaagc attatcggat gctctttcac 1920 cgttacccaa agacttggat atgagattta gtctgcttaa attaagtacg tgtgcaccct 1980 ttccaagcgt taaaacttta gatagtggtt tattaccaaa gcaaagctac ggtgacgaaa 2040 gacaatttga gagtcaatct gtcgtgtctg tatctgattt tcatcttaag agcgtcgagt 2100 cagtaaaaat gaaaagtatg tcgtcagcgg tctacacagg tcccctcaaa gttcaacaga 2160 tgaagaacta tatggattac ctgtccgcat cgatttcggc tactgtttca aatttatgca 2220 aggtgctaaa ggatgtctat ggtgtcgacc cagagtctgc agaaaagtct ggagtctacg 2280 atgtagtgaa aggcaaatgg ttattaaaac caaaggataa atgtcacgct tggggtgttg 2340 ccgaacttaa caatggcgag aaagtcatcg tattactcga atgggctgat ggattcccta 2400 tttgtggtga ttggcgacga gtggccgtct cttcagattc ccttatttat tcagatatgg 2460 gaaaacttca gacgttgtta agctgcttaa aggacggtga gcctgtactt cggatgccga 2520 aagtcacgtt agtagatggc gttcctggtt gtggaaaaac aaaggaaatt cttgaaactg 2580 tgaattttga tgaggactta atacttgttc ctggtaaaga agcttgtaaa atgattatca 2640 agagagctaa taagtctgga catgtaagag cgacaaagga taatgtaaga actgtggatt 2700 cgttcttaat gcatttgaag cctaagactt ataacaaact gtttatcgat gagggtttga 2760 tgttacatac tggttgtgtc aactttctga tagcattgtc ccattgtcgt gaagcaatgg 2820 tttttggtga tactgaacaa attcccttta taaacagagt ggcaaatttc ccttatccga 2880 aacattttgg ccacacttgt ttacatcata gggaggttag gaggttatca cttagatgcc 2940 cggcagatgt tacgcatttt atgaactcca aatatgacgg gaaagtttta tgtacgaatg 3000 atgtgattcg ctcagttgat gctgaagtgg ttagagggaa aggggttttt aacccgaaaa 3060 gcaaaccgct taaagggaaa attatcacct tcactcaaag tgacaaagct gaactgaatg 3120 agcgtggtta tgaagaagtt tcaacttttg gtgaaattaa caccgtacac gaaatccaag 3180 gtgagacctt tgaagacgta tcggttgttc gtttgacacc aactccattg gagcttatat 3240 caaagagttc accgcacgtt cttgttgcat tgacaagaca tactaaaagc ttcaaatatt 3300 actctgtggt tctcgatcct ctcgtcaaag tttgctctga tttaagcaag gtgtcagact 3360 ttatactgga tatgtataag gtcgatgccg ggatcttata gcaattacag gtagggagta 3420 tcttcaaagg cgaaaatcta ttcgtaccat gtcctaaatc tggttatatt tctgatatgc 3480 aattttatta tgacactttg ttacctggaa acagcactat tttaaacgag tatgatgcag 3540 tgactatgaa tcttcgtgaa aataatctta atgtcaagga ttgcacgata gatttttcta 3600 aatctgttag tgtcccgaga caacaacaag agtttttcac accagttatt cgaactgctg 3660 ctgaacgtcc acgtagtgct ggtctccttg aaaaccttgt ggcaatgata aaaagaaatt 3720 ttaactctcc agatttaacg ggtatattag atattgaaga tactgccgaa cttgtagtta 3780 ataagttttg ggatgcttac attattgacg aactttctgg tggaaatgtt acaccgatga 3840 cttcagatgc ctttcacagg tggatggcta agcaggagaa aagtactatt ggtcaattag 3900 ctgattttga ctttgttgat ttacccgcta ttgatcaata caaacatatg attaaggggg 3960 aacctaaaca gaagcttgat ctcagtcctc aagatgagta tgctgcactt cagactattg 4020 tttatcactc aaagcagata aatgcaattt tcggtcctct tttttccgaa ttaactagac 4080 agcttttaga gaggatagac agtagcaaat ttttgtttta cacccggaaa acgcccgaac 4140 agattgaaga gtttttctca gatttggatt cgacggtgcc aatggaagtt ctagagttag 4200 acatttcaaa gtatgacaaa tcccagaacg aattccattg tgctgttgag tacttgattt 4260 gggagaaact tggtcttaat ggctttctcg aagaagtttg gaaacaggga cataggaaga 4320 catccttgaa ggattacacc gcaggaataa agacttgttt atggtatcaa aggaaaagcg 4380 gagatgtaac aacttttatt ggcaatacag ttattatagc tgcttgtctt gcgtcgatga 4440 tacctatgga taaggtaatt aaagctgcgt tttgtggaga tgatagtatt ctatacattc 4500 caaagggact tgatcttcct gatatccaat ctggagcgaa tttgatgtgg aacttcgagg 4560 caaaattata tcgtaagcgt tacggatatt tttgcgggag gtatattatt catcatgaca 4620 gaggtgccat tgtgtattac gaccctctta aattaatttc taagttaggt tgtaaacaca 4680 tcaaatcttt ggatcatttg gaagaattta gaatctcgct gtgtgacgta agctcttctt 4740 taaataattg tgcgtatttt ggtcaattga atgatgcaat tgctgaggtc cacaagaccg 4800 cagtaaatgg gtcgtttgcg ttttgtagta ttgttaagta tctttccgat aaaaaccttt 4860 tcagaacctt gttctacaat ggctctagta ctaagggata gcatcaaaat ctctgaattt 4920 attaatttat cagcctctga aaaactacta ccgtcagctc taacggctgt caagtcggta 4980 cgtatttcaa aggttgataa aattataagt tacgagaatg atactttgtc tgatattgat 5040 ttgcttaaag gtgtgaagtt agtagagatt gggtatgtgc tcgttgccgg cctcgtcgtc 5100 actggtgaat ggaatttacc ggacaattgc aaaggtggtg tgagtatctg tcttgtagac 5160 aaacgcatga aaagagctaa tgaagcaaca cttggctctt atcatacatc tgcttgcaag 5220 aagagattca cctttaaaat tatcccgaat tacagtgtca ccactgccga cgctcttaaa 5280 ggaatatggc aagttatgac aaatattaga ggtgtggaaa tggaaaaggg tttttgccca 5340 ttatctttgg agtttgtttc tatttgcgtg gtgtatttaa ataatataaa actcggactg 5400 agagagaaga ttttgaacgt aacagaagga gggcccaccg aacttactga agcagttgtt 5460 gatgagttcg tgagaaagtt tcctatggct gctaggctca agtcttttcg ctccgtcaac 5520 aaaaagaaac ctagtaacag ttctaagttt gttaatggaa aatctagact taatagtcgt 5580 aataaattaa attatgaaaa tggtgatagt gatgttggta ttagtgttgt agatgatatt 5640 gtggttggta atggagttag tgatattcgt attgatcatc attgtgagtc atttgacgca 5700 caatctgatt cgtattgaat atgtcttaca ctattacaga cccgtctaag ctggcttatt 5760 taagctcggc ttgggctgac cccaattcac taatcaacct ttgtaccaat tctctgggta 5820 atcagttcca aacacaacaa gctcgaacaa ctgttcaaca gcagtttgct gatgtttggc 5880 agccggttcc tactttgacc agtaggttcc ctgcaggcgc tggttacttc agagtttatc 5940 gctatgatcc tatattagat cctttaataa ctttcttaat gggtactttt gatactcgta 6000 atagaataat cgaggtagaa aatccgcaga atccgacaac tacggaaaca ttagatgcaa 6060 ctcgtagagt tgatgatgca actgtagcaa taagatctgc aataaataat ctattaaatg 6120 agttagttag gggaactggt atgtacaatc aagtctcatt tgagacgatg tctggactta 6180 cttggacctc ttcctaatca tttttaggaa aataacgttg atagtgttga actatccgtg 6240 gtgcatacga taatacatag tgtttatccc tccacttaaa tcgaagggtt tttcactgcg 6300 gatatgtagg tttcctacgg tgaatataaa acttatatcc cgttgtgtac acgatagtac 6360 atagtgttta tccctccact taaatcgaag ggttttgtgt cagacgcgtg taaggagtgg 6420 tcaaccttac gacacattta aaataatgcg tccgtggtgc atacgataat gcatagtgtt 6480 tgtccctcca cttaaatcga agggttgtgt atatggatca tgcggataaa gttatactgg 6540 tgcagtataa cccgttatac acataaaatt atgagggatt cgaattcccc cttacctcgg 6600 gtagaggccc a 6611 //