ID U89243; SV 1; linear; genomic RNA; STD; VRL; 8106 BP. XX AC U89243; XX DT 26-MAR-1997 (Rel. 51, Created) DT 08-FEB-2002 (Rel. 70, Last updated, Version 5) XX DE Garlic virus X, complete genome. XX KW . XX OS Garlic virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Allexivirus. XX RN [1] RX PUBMED; 9460937. RA Song S.I., Song J.T., Kim C.H., Lee J.S., Choi Y.D.; RT "Molecular characterization of the garlic virus X genome"; RL J. Gen. Virol. 79(Pt 1):155-159(1998). XX RN [2] RP 1-8106 RA Choi Y.D.; RT ; RL Submitted (10-FEB-1997) to the INSDC. RL Agricultural Chemistry, Seoul National University, Seodun-Dong 441-744, RL Suwon, Korea XX DR MD5; 19ddc75891a0cbcb368651eea482c256. XX FH Key Location/Qualifiers FH FT source 1..8106 FT /organism="Garlic virus X" FT /host="Allium sativum" FT /isolate="Korea" FT /mol_type="genomic RNA" FT /db_xref="taxon:150284" FT 5'UTR 1..97 FT CDS 98..4729 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:O09498" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O09498" FT /protein_id="AAC58809.1" FT /translation="MTTVQKLLDQISDPNARAAYSQDCLSAAKNAATKAMTIAPYAVTQ FT TEALTLERIGITTSPFATTSNTHAADKIIENDCLEIIGRYLPKEPVTLIQLKRAKLHLL FT KRGPNTDIFQNYCHEPKDVLRFGLTNPHVCPVVNTSCAVISDTLHFMSSQQVWTLFKRN FT PKLQRLYGTLVLPVEALNKLPSLFPEIYKLEYYDNHFAYMPGGHGGGAYIHSYGTLKWL FT STAQIGTESNHLSIEKIETKAAHHIMLIQRRRPELPWPLPPLWVFHASDYVRLPEIFYP FT SEANVQRAYPHVFIKRLQLYCFSVKAVSLRDIFAKIRQVIPTEDLSRFSTADLIRLANY FT LLFITGMQQTSDYQSPLMESLLGKLCLSIRARVREFFQNLLGKSSYAALLTVTDVRPVY FT FTTKPIRRPICGQPWFDEAEVESKPATPTITGYPNPSPDDLDLLAEFEQHERAMMEENC FT FTSKTSATANRAQNPQQNRERVTPEKLAHSSDESHTQITSSQGVNDHTWPTEQSQPTNT FT CKEITDDENMMDGHVTDWTDSDSDHSDEDIETQPETNLSQSIHDDLLPDESDLPDLESV FT ADEQSDAEDNGDSTIDQANLCNTTCDAETDKSAQTPAEAKSSPKSASRVDLTPLDSDTV FT EILRLHGFTNYKPQHDGDFQIAPVFYNHQACNLPLYDGITNSAQSKFIEMAHALKRNCY FT NYILEPRRATAFMSDVKNNLTGLVLPKLDRDLLTSWVALSENACRKVGLIVIHGAGGAG FT KSRALQEILRSNSIDTNQVNIIVPTINLAVDWKKKLPKIDPRRVMTFEKACEREGKSVV FT IMDDYGKLPAGYIDAYLAIKFNVEIVILTGDQRQSVFHNDRKDSQIALLTSNTAHFKRY FT CDYYLNATHRQPRRLANPIRVHAEREVGGAIKHSTLIPTHAMTLVPAFRSQSLLTDLGR FT QAMTYAGCQGLTLPHLTIVLDKDTPLCSDEVLYTALSRASETITFVNTYSNNKDFLDKL FT DSTPYLKTLISGVREDEQVGWENPPPEPEVRDAPTKTHIPVANNNVQLESKIETMEDKD FT TRELWSGEEKTNLMQTQDPVIQLFPHQQAKDEALFKITINERIKLASPETNCKALKETL FT NTGNLLFEAYADFMNVPRETQPFDKRLWAHCRQLALRTYLSKPTTNLQQGAMQDPDFPE FT NAIALFNKSQWVKKLEKVGCKFKAGQTISAFKQSTVLLTTTMALYLRKKRESHQPDNVF FT VMCEKTPEQFNSFVLTRWDFTRPNYTSDYTQYDQSQDSAFLNFELRKAKHLGLPDEVVD FT FYAFIKTHAKTFLGNLAVMRLSGEGPTFDANTECNIAYDALRFQLDSTVNASYAGDDLV FT RDRARSERPGWKYAEPLFSLKAKPLVTSKPDFCGWRLTKYGIVKSPVQLYQSLQLALRL FT GKVEEVKRSYAIDYLFAYRLGDQLYDIFDEDELAKHQLVTRTLIKKGMQPPSSGEHLPT FT FHVTSDRLIRDPKAIQVLSYESDRIMVPTDVIEDHFTLASRTDRDDMTAESNRRASGLC FT TPINPGDSTGALLTDMFPSIATL" FT CDS 4841..5545 FT /codon_start=1 FT /product="helicase" FT /db_xref="GOA:O09499" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O09499" FT /protein_id="AAC58810.1" FT /translation="MKIQLLIQLLNNFGFHRTAEPVREPLIVHGVPGCGKSTLIKTLIT FT HQSVSAYTLGVPYGKTLAHPGVLNPPTLEDIFDFETRILDEYQLGAKEDFKAFNILFGD FT PFQGDTHLPAHFIKSLSHRVPRQICQFLNSLQYEIQGEREGTLNHLPVFEANSTGPRGV FT VLHLGPISCQLTRTYRVASKTPAEVQGLEFKEVTLVYHSSELTADPNAFFIAATRACGC FT LGLITDKVSHIS" FT CDS 5542..5862 FT /codon_start=1 FT /product="12 kDa protein" FT /db_xref="GOA:O09500" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:O09500" FT /protein_id="AAC58811.1" FT /translation="MSFTPPPDHTKSFLALATGAAAGLLIYTLRSNQLAPVGDNTHQLP FT HGGRYRDGNKFVSYNGPNTGASSHSIWWPAITAITLTIVIHFLSSTRRRVCVRCSESTL FT PH" FT CDS 5964..6830 FT /codon_start=1 FT /product="32 kDa protein" FT /db_xref="InterPro:IPR008398" FT /db_xref="UniProtKB/TrEMBL:O09501" FT /protein_id="AAC58812.1" FT /translation="MTHATAQNRRSSDQCDEPRMGTTNRTFFTNLSTALDTTSNLINHV FT PPTRYTLPSVALPLDELYGLLHALHRNSLEWLTHISHDTEQVINKLNNIETILLSEVRT FT NSRKIDTVFEKLANIESHLINSEKSDFERELAKSLASIETQIQDVHARFREMSHHESST FT LGGNPGTSPTPESSVINSLLPTFNPEHPTARCRAYGSVEFGGTVLQIPMDVRGRRASTA FT LRLSVMYTPKREATTVKYKLFDDGALLFTEELSTQHRFTQPFGDSLALLHSKCPNFLYK FT IRDEVLC" FT CDS 6875..7606 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:O09502" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:O09502" FT /protein_id="AAC58813.1" FT /translation="MGDRNQGINPNQGLNAQVQGDGASNQNQRPNRNPPPRPLADSNAQ FT NSIMPSENDLAAIASDVTSNSVATQETIREILSTLQASGPAATPKDLFSLAWACYHNGS FT SRFTTMTTDAPCGMPPAELKDLVEDYCTLRQFCGYYAKTCYVTGKQQNKPPANWSRKGF FT QEESKFAAFDFFNAVMSDSSPTPPGGMRFKPTHEEIVGHSMNAKMSIIESPKASNMVST FT RADSLAQQQIHEAPKPLMLTF" FT CDS 7617..8000 FT /codon_start=1 FT /product="nucleic acid binding protein" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:O09503" FT /protein_id="AAC58814.1" FT /translation="MHSYDFNLLACLQFSKPTLPSDVRIIIYNLTFDSRKLGRKAQQNK FT PFTGTSKCAARRRAKRYGRCFDCGALLEANHVCKLFTTRSNSDCLSVIHEGPAKLYAER FT SFRKSSFAEQLIRNDLQLMKLYK" FT 3'UTR 8001..8106 XX SQ Sequence 8106 BP; 2483 A; 2075 C; 1712 G; 1836 T; 0 other; gaaaatcaaa caaccacaaa ctaaactaca cagaacaaac ctcaacacta cttgataagg 60 atacttagcg aagccctgaa catttagctc ttgaggtatg acaactgtgc agaagttact 120 cgaccaaatt tctgatccca acgctagggc ggcgtattca caagactgtc tttctgctgc 180 caaaaatgca gcaacgaaag cgatgaccat tgccccctac gcagtcacac agactgaagc 240 gcttactttg gagcgcattg ggatcaccac ctcacctttc gccacgactt ccaacaccca 300 tgctgccgat aaaattattg aaaatgattg cttagaaatt atcggtagat acttgccgaa 360 ggagcccgtc acacttatac agctcaaacg ggctaagtta catttgttaa aaagagggcc 420 taatacagac atcttccaga attattgtca tgagcctaaa gacgtactca gatttgggtt 480 aacaaacccc catgtatgcc ccgtggtgaa caccagctgc gcggtaatat ctgacacgct 540 ccattttatg tcgtcacaac aagtgtggac actgtttaag cgaaacccca aattacaaag 600 attgtatggt actctagtgc tgccggttga agcactcaac aagctaccca gcttattccc 660 ggagatttat aaactagagt actacgacaa ccactttgcg tatatgcctg gtgggcatgg 720 gggcggagcc tacattcact cttatggcac actcaagtgg ctcagcacgg cgcaaattgg 780 cacggaaagc aatcacctta gcattgagaa gattgaaaca aaagccgcac accatataat 840 gttgatacag cggaggagac cagagttacc atggccacta ccaccactct gggttttcca 900 tgcctctgac tatgttagac tacctgaaat attctacccc agtgaagcta acgtacagag 960 agcatacccc catgtattta ttaaacgtct ccagctgtac tgcttctccg tgaaagcagt 1020 gtcacttcgt gacatctttg caaagatccg ccaagtgatc cctacggagg atttgtcgag 1080 attctccaca gcagacctaa tacgattggc aaattacctg cttttcataa ccggcatgca 1140 acagacaagc gactatcaat caccgttaat ggaaagcttg cttggaaaac tatgcttatc 1200 tattcgggcc agggttcgtg agttcttcca aaacttgctg ggcaaatcct catacgctgc 1260 actgctcact gttacagacg tgagaccagt ctactttacc accaaaccaa tcaggaggcc 1320 aatatgcgga caaccgtggt ttgatgaagc agaggtggaa agtaaacccg caacacccac 1380 aattacgggc taccccaatc catcaccaga tgacctagac ctgctcgccg aatttgaaca 1440 acatgagcga gcaatgatgg aagaaaactg ctttacatca aaaacgagtg ccacagcaaa 1500 ccgagctcaa aaccctcagc aaaaccggga acgcgtaaca cctgagaagc tggcacacag 1560 cagtgacgaa tcccatacgc aaatcacgag ctcacaggga gtgaatgacc acacgtggcc 1620 aacggaacaa tcgcaaccca ccaacacatg caaagaaatt actgatgacg aaaacatgat 1680 ggatgggcat gtcacagact ggactgatag cgacagtgac catagcgacg aggacatcga 1740 gacacaacct gaaaccaatc tttcacaatc aatccacgac gatctgctgc ctgacgagag 1800 cgacttgcct gacttagaaa gcgttgcaga cgaacagagc gatgcagaag acaatggaga 1860 ctctacaatc gaccaagcga acctctgcaa cacaacctgc gacgctgaaa ctgataaatc 1920 agctcaaaca cctgcagaag cgaagtcatc gccaaagagt gcttcgcgag tggacttgac 1980 acccctcgat agtgacactg ttgaaatact caggctacat ggatttacta actataaacc 2040 acaacatgac ggagatttcc aaatagcccc agtgttctat aatcatcaag catgtaatct 2100 acccttgtac gatggaatca ctaattccgc ccaatcaaaa tttatagaaa tggcacacgc 2160 attgaagaga aactgctaca actacatatt ggagccaagg cgagctacag ctttcatgtc 2220 ggacgttaag aacaatttga ccggactagt actaccaaag ctggatcgag atttgctgac 2280 atcatgggta gccttgtctg agaatgcatg taggaaagta ggccttatag tgatccatgg 2340 agcgggtgga gcagggaaaa gtagggcgtt gcaggagata ctgagaagca attcaatcga 2400 cactaaccaa gttaacatca ttgtgccgac aatcaatctt gctgtcgact ggaagaagaa 2460 actgccaaaa attgatccac gccgtgtgat gacgtttgaa aaggcatgcg aacgtgaggg 2520 caaatcagtc gttataatgg atgattatgg taaactacca gctggctata tcgacgcata 2580 cctagcaatc aagttcaatg tggaaatagt tatcctcacc ggtgaccaga ggcagtctgt 2640 tttccataac gatcggaaag attcacaaat cgccttgttg acatccaaca ctgcccattt 2700 caaacgctac tgcgattact acctcaatgc tacacaccga caaccacgaa gattagctaa 2760 cccgattaga gtgcacgcag agagggaagt gggaggagcc atcaaacatt ccacactcat 2820 cccaacacac gccatgacgc tcgtcccagc cttcagaagc caatcacttc ttacagattt 2880 gggcagacaa gctatgacgt atgctgggtg ccaagggctc acgttaccac acctaacaat 2940 tgttttagat aaagacacac ccttgtgttc tgatgaagtg ttgtacactg ctttgtcaag 3000 agcctcagaa acaatcacct tcgtcaacac atattcgaac aacaaagact ttcttgacaa 3060 gttagattcc accccatacc tcaaaacact aatctcaggg gtgcgagaag atgaacaagt 3120 gggatgggaa aatccaccac cagagccaga ggtacgagat gctccaacaa aaacacatat 3180 cccagtggct aataataatg tgcagctcga gagcaaaata gaaactatgg aagacaaaga 3240 caccagggag ttgtggagtg gggaagagaa aacaaatctc atgcaaacac aagaccccgt 3300 gatccagctg tttccccacc agcaggccaa ggatgaagcg ctctttaaaa tcacaataaa 3360 tgagagaatc aaattggcga gccctgagac aaactgcaaa gctctcaaag aaactctcaa 3420 cactggaaac ttgctgtttg aagcttacgc cgatttcatg aacgtgcctc gggaaactca 3480 accattcgac aagagacttt gggcccactg cagacaactt gccctacgca catatctctc 3540 aaaaccaacg acgaatttgc aacaaggagc catgcaagat ccagacttcc ccgaaaatgc 3600 tatcgcgctg ttcaataaat cacaatgggt taagaaactt gagaaagttg gatgcaaatt 3660 taaagcgggc caaactatat cagctttcaa acagtcaact gtcctactca caaccaccat 3720 ggctttgtac ctacggaaga agcgagaaag tcaccaaccc gataatgtct tcgtgatgtg 3780 cgaaaagacg ccagaacaat tcaattcatt tgttctcact agatgggatt tcacgaggcc 3840 aaactacaca tccgactaca cacagtatga ccaatcgcag gactcagcat tcctcaattt 3900 cgagttaagg aaagccaaac accttggtct gccagacgaa gtcgtagact tttacgcgtt 3960 catcaagaca cacgctaaaa cattcctggg gaacctagca gttatgaggc taagtggcga 4020 gggaccgact tttgacgcga acacagaatg caatatagca tatgacgccc tcaggtttca 4080 acttgactcg acagtgaacg cttcgtacgc tggggatgac ttggtgcgtg atagagcccg 4140 tagcgagcgc ccggggtgga aatatgcaga acccctattt tcgttaaaag ctaaaccgct 4200 agtgactagt aagccagact tctgcgggtg gagattaacc aagtatggaa ttgttaaatc 4260 cccagtacag ttgtatcaat cactgcaact agcgctacga cttggtaagg ttgaagaggt 4320 taagcgaagc tacgccatag actacctgtt cgcgtatcga cttggagacc agctttacga 4380 tatattcgac gaagacgaac tagcgaaaca ccaattggtc acaaggactt tgatcaagaa 4440 aggcatgcag ccgcccagtt caggagagca tttaccaact ttccatgtga catctgaccg 4500 gctcatacga gatccgaaag caattcaggt gttgagttac gaatcagata gaatcatggt 4560 ccccaccgat gttatcgaag accacttcac attagctagc agaacggacc gtgacgacat 4620 gacggctgaa agcaatagac gagcttccgg actatgcacg ccaatcaacc ccggagacag 4680 taccggcgcc ctgttgacag atatgtttcc tagcattgcc acactttaac ctatttaaca 4740 atttgcacta acattagata agttacttta gcaatagtac aatcaatcta cactacgaat 4800 agtcgcgtgc tgatcagtta ggtttaactt tgtgtgtgaa atgaaaattc agctgctgat 4860 acaattgtta aataacttcg ggttccaccg caccgcagag ccagttagag aacctttgat 4920 tgtgcacgga gtgccgggat gtggtaaatc gacacttatc aagactctga tcacacatca 4980 atccgtgtca gcctacactt taggagttcc gtacgggaaa acacttgcac acccaggcgt 5040 actcaacccg cctacccttg aagacatttt tgatttcgaa actagaatct tggacgaata 5100 ccagctaggt gccaaagagg acttcaaagc cttcaatata ttgtttggcg accctttcca 5160 gggtgacaca catctccctg cgcatttcat caaatcctta tcccacaggg tgccacgaca 5220 aatctgccaa ttcttaaatt cactgcagta cgagatacag ggtgaaaggg aaggaacact 5280 caatcatttg cccgtcttcg aggctaacag cacggggcct agaggggttg ttctacatct 5340 cggacccatt tcttgtcagc tcacgcgcac atacagagta gcgtcgaaaa caccggctga 5400 ggtgcagggg cttgagttca aggaagttac gcttgtttat cattcaagcg agttaacagc 5460 agatccaaac gccttcttca ttgcggctac acgcgcatgt gggtgtttgg gcctcataac 5520 tgacaaggtt tcccacattt catgagcttc actccaccac cggaccatac caagtcattc 5580 ctagcgttag ccacaggtgc agccgcgggc ctgttaattt atacccttcg aagcaaccaa 5640 ttagcgccgg ttggagataa cactcaccag ctaccacacg gaggccgata ccgggacggc 5700 aacaaattcg tcagctacaa cggtccgaac actggcgcct cctcacacag catctggtgg 5760 ccagcaatca ccgcaatcac actcaccatt gtcatacatt tccttagcag cactcgccgc 5820 cgcgtttgtg tacgctgttc tgaatctact ctaccccact aaaaatgggt gcgttataac 5880 tataactggt tcgaccgtac aagtctctga atgcccctta gaacaagttc ctgaaattgt 5940 taaagctttt gcctggagcg cccatgacac acgccaccgc ccagaatagg agatcatctg 6000 atcaatgcga tgagccccgc atgggcacaa ctaaccgaac attcttcaca aatttgagta 6060 ctgcgcttga caccaccagc aacttgatta atcatgttcc accgaccaga tacactctgc 6120 cgtccgttgc gcttcctttg gatgaactgt acggattatt gcatgcgctt cacaggaaca 6180 gtttggagtg gctgacgcac attagtcatg acacggagca ggtaatcaac aaattgaata 6240 acattgagac cattttgctc agcgaagtgc gcacgaatag ccgaaagatt gacactgtct 6300 ttgagaaact tgcaaacatt gaatctcacc tgatcaatag cgaaaaatca gacttcgaac 6360 gagagttggc caagtcttta gcctccattg agacgcaaat tcaagacgtg cacgctagat 6420 ttcgcgagat gagccatcac gaaagctcta cacttggcgg caatccaggc acatcaccta 6480 ccccggaatc atcggtcatt aattctttat tgccaacttt caatccggaa catcccacag 6540 ctagatgcag ggcatatgga agtgtagaat tcggcggcac tgttctccag atccctatgg 6600 atgttagagg tcggcgtgca agcactgcat tacgtttgtc cgtcatgtac actccaaaac 6660 gagaggcaac caccgttaaa tacaagttat ttgacgacgg cgcactactc ttcactgaag 6720 aactgagcac acagcacaga tttacgcaac cattcggtga ctctttagct ctcctacatt 6780 caaaatgtcc aaatttcctt tataagatca gagatgaggt actatgttaa gttctaaatt 6840 aggtcgaatt agttagtacg tacacaaata cgcgatgggc gatcggaacc aaggaataaa 6900 tcccaatcag ggactcaacg ctcaagtgca aggcgatgga gcaagcaatc agaatcaacg 6960 ccccaacagg aatccacctc ctcgacccct cgctgactca aatgcccaga actctataat 7020 gccttctgaa aatgacttag cagcgatagc aagtgacgta acttccaatt cagtagccac 7080 acaggagact atccgggaaa tcctcagcac ccttcaagcg agcgggcccg ctgcaacacc 7140 caaagacttg ttttcacttg cgtgggcatg ctaccacaat ggatcatcac gattcacgac 7200 aatgaccact gacgcacctt gtggcatgcc tccagcagag ctcaaagacc tcgttgaaga 7260 ttactgcacg ctgagacaat tttgtggtta ctacgccaaa acatgctatg tcacggggaa 7320 gcagcaaaac aagccaccag ccaactggtc tcgaaaaggt ttccaagagg aatcaaaatt 7380 tgccgctttt gatttcttca acgccgtaat gagcgactcg tctcccacac cacctggtgg 7440 tatgcgattt aaaccaaccc atgaggagat tgtgggacac tccatgaacg caaagatgtc 7500 cattatcgag tcaccgaaag cctcgaatat ggtttccact cgagccgact cgttggccca 7560 acagcaaatc catgaagctc caaaacccct tatgctcaca ttctgaatca aactaaatgc 7620 atagttacga cttcaacttg ctcgcctgtc tacaattttc aaagccaaca cttccaagcg 7680 acgttagaat aataatatat aatttaactt tcgatagtag gaaattagga cgtaaagcac 7740 aacaaaataa acctttcaca gggacttcca aatgtgcagc ccgccgcaga gcaaaacgct 7800 acggccgatg ctttgattgt ggtgcactgc tggaagccaa ccacgtatgt aaattattta 7860 caacacgttc caattctgac tgcctgagcg ttatccatga aggacccgct aagctatacg 7920 ctgaaaggtc tttccgcaaa tcatctttcg ctgagcagct cattcggaat gacttgcagt 7980 taatgaaatt atataaatag gctctgcgag cctccactgg gtttacaggg ctctggacat 8040 ggacaaagac acccatgttt gttgatatta ctaaacttac tttgtaacaa catttgtcca 8100 agcgac 8106 //