ID U88692; SV 1; circular; genomic DNA; STD; VRL; 2739 BP. XX AC U88692; XX DT 19-JUN-1997 (Rel. 52, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 5) XX DE Tomato leaf curl virus - Taiwan complete genome. XX KW . XX OS Tomato leaf curl Taiwan virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2739 RA Chiang B.T., Green S.K., Tsai W.S., Nakhla M.K., Maxwell D.P.; RT "Molecular characterization of a tomato leaf curl geminivirus associated RT with tomatoes in Taiwan"; RL Unpublished. XX RN [2] RP 1-2739 RA Chiang B.T., Green S.K., Tsai W.S., Nakhla M.K., Maxwell D.P.; RT ; RL Submitted (06-FEB-1997) to the INSDC. RL Plant Pathology, University of Wisconsin, 1630 Linden Dr., Madison, WI RL 53706-1598, USA XX DR MD5; 2b634d31d6f9a79dfcf0e40352d543fc. DR EuropePMC; PMC2170441; 17963488. DR EuropePMC; PMC3126389; 21378048. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Tomato leaf curl Taiwan virus" FT /strain="Taiwan" FT /mol_type="genomic DNA" FT /clone="pTW1" FT /note="TwToLCV" FT /db_xref="taxon:196093" FT rep_origin join(1..13,2602..2739) FT CDS 131..472 FT /codon_start=1 FT /gene="V2" FT /product="precoat protein" FT /db_xref="GOA:O12276" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:O12276" FT /protein_id="AAB61141.1" FT /translation="MWDPLLNDFPESVHGLRCMLAIKYLHFVENTYSPDTLGYDLIRDL FT ILVIRARDYVEATRRYSHFHSRFQGSSPSELRQPIWQPCSCPHCPRHKQKEFMGESALV FT QKAQDVQDV" FT CDS 291..1064 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:O12277" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:O12277" FT /protein_id="AAB61142.1" FT /translation="MSKRPADIVISTPASKVRRRLNFASPYGNRVAAPTVLVTNKKSSW FT VNRPLFRKPKMYRMYKSPDVPRGCEGPCKVQSFEQRHDIAHVGKVICVSDVTRGNGLTH FT RVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNE FT PSTATVKNDNRDRFQVLRRFQATVTGGQYACKEQALVRKFMKINNHVTYNHQEAAKYDN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT CDS complement(1061..1465) FT /codon_start=1 FT /gene="C3" FT /function="may enhance replication" FT /db_xref="GOA:O12278" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:O12278" FT /protein_id="AAB61143.1" FT /translation="MDSRTGELITAAQAENGVYTWTVNNPLYFKITQHNQRPFLQNHDV FT MTIQIQFNYNLRKALGIHQCFLICQIWTRLQPQTSHFLRVFKYQCMKYLDNLGVISLNN FT VIRAMTNVLYNVIEGTVDAQFSHIITFKIY" FT CDS complement(1206..1613) FT /codon_start=1 FT /gene="C2" FT /product="Trap protein" FT /function="likely involved in regulation of CP gene FT expression" FT /db_xref="GOA:O12279" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:O12279" FT /protein_id="AAB61144.1" FT /translation="MRNSSPSPSHSTHVPIKVQHKIAKKRPIRRRRVDLPCGCSYYLGI FT NCASHGFSHRGTHHCSSSREWRVYLDSQQSPLFQNNTTQPETISTEPRRHDNTNSIQLQ FT PEESVGNTPVFSNLPDLDSFTTSDLAFLEGI" FT CDS complement(1513..2601) FT /codon_start=1 FT /gene="C1" FT /product="Rep protein" FT /function="DNA-nicking protein; binds to the origin of FT replication" FT /note="rep gene; helicase homolog; replication-associated FT protein" FT /db_xref="GOA:O12280" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:O12280" FT /protein_id="AAB61145.1" FT /translation="MHPLNKFRINAKNYFLTYPHCSLTKEEALSQIQALQTPTNKLFIR FT VCRELHEDGAPHLHILIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSTDVKTYM FT EKDGDVLDHGIFQVDGRSARGGCQSANDAYAEAINSGSKAEALNILREKAPKDFVLQFH FT NLNSNLDRIFTPPLEVYISPFNSSSFDQVPVELVEWVAENVRDSAARPWRPMSIVVEGE FT SRTGKTLWARSLGPHNYLCGHLDLSPRVYNNEAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSDTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNFALKDWALKNAEFITLTEPL FT YSRANQGPTQNSEEETNSQAEG" FT CDS complement(2151..2444) FT /codon_start=1 FT /gene="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:O12281" FT /protein_id="AAB61146.1" FT /translation="MGLLTCTFSSNSKENSNVKITDSSTSHPQPGQHISIRTFRELRAQ FT QMSKPIWRKTETCLIMEFSRSMEDQLEEVANLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2739 BP; 721 A; 537 C; 612 G; 869 T; 0 other; accggatggc cgcgattttt taagtgggtc ctacgcacta atgttggtcg gccaatagaa 60 acgctccctc aaagcttatt tacaaaaata cccgttataa atacttggtg gctaagttac 120 aatcagtaaa atgtgggatc cacttttaaa tgattttccg gagtctgtgc atggtctacg 180 gtgtatgctt gccattaagt atctacattt tgtagaaaat acatattccc cggatacttt 240 gggttacgat ctcatacgtg atttgatttt agttatccgt gctagagatt atgtcgaagc 300 gacccgccga tatagtcatt tccactcccg cttccaaggt tcgtcgccgt ctgaacttcg 360 ccagcccata tggcaaccgt gtagctgccc ccactgtcct cgtcacaaac aaaaagagtt 420 catgggtgaa tcggcccttg ttcagaaagc ccaagatgta caggatgtat aaaagcccag 480 atgttcctcg tggttgtgaa ggcccatgta aggtacagtc atttgaacag cgtcatgata 540 tagcccatgt gggcaaggta atatgtgtgt ccgatgtcac acgaggtaat gggctgaccc 600 atcgtgttgg gaagaggttt tgtgttaagt ccatttatgt gttgggtaag atatggatgg 660 atgagaatat caagacgaag aatcacacaa atactgtgat gttcttctta gtccgtgata 720 gaaggccttt tggtactcca caagatttcg gtcaggtctt taatatgtat gataatgagc 780 ctagcactgc aacggtgaag aatgacaata gagataggtt tcaagttctc cgtcgattcc 840 aggctacggt gactggcggt cagtatgcgt gcaaagaaca agctctagtt aggaagttta 900 tgaaaatcaa caaccatgtt acttataatc accaagaggc tgctaaatat gataaccata 960 cagagaatgc tttgttgttg tatatggcat gtactcatgc cagtaatcct gtgtatgcta 1020 ctttgaaaat cagaatttat ttctatgatt ctgttcaaaa ttaataaatt ttaaatgtta 1080 ttatatgtga aaactgagca tcgactgtgc cctctattac attgtatagt acatttgtca 1140 ttgctctaat tacattgttt aaactaataa ctcctaaatt gtctaaatac ttcatacatt 1200 gatatttaaa taccctcaag aaatgcgagg tctgaggttg taaacgagtc caaatctggc 1260 aaattagaaa acactggtgt attcccaacg ctttcctcag gttgtagttg aattgaattt 1320 gtattgtcat gacgtcgtgg ttctgtagaa atggtctctg gttgtgttgt gttattttga 1380 aatagagggg attgttgact gtccaggtat acacgccatt ctctgcttga gctgcagtga 1440 tgagttcccc tgtgcgagaa tccatgtgat gcgcagttaa ttccaagata ataagagcac 1500 ccacaaggaa gatcaaccct ccgcctgcga attggtctct tcttcgctat tttgtgttgg 1560 accttgattg gcacgtgagt agagtggctc ggtgagggtg atgaattccg cattctttaa 1620 agcccagtct ttgagtgcga aattcttttc ttcgtctaag tactctttat atgatgatgt 1680 tggccctgga ttgcaaagga agattgttgg gataccacct ttaatttgaa ttggtttccc 1740 gtatttggtg tcgctttgcc agtccctttg ggcccccatg aattctttaa agtgctttag 1800 atagtgggga tcgacgtcat caatgacgtt gtaccatgcc tcattgttgt agactcttgg 1860 gcttaggtca agatgaccac acaagtaatt gtgtgggcct agagacctgg cccaaagtgt 1920 cttccctgta cgactctctc cctctaccac aatactcatg ggtctccatg gccgcgcagc 1980 ggaatccctc acgttctcgg caacccattc tacaagttct actggaactt gatcaaatga 2040 agaagaatta aaaggagaaa tataaacctc taatggaggt gtaaaaatcc tatctaaatt 2100 actatttaaa ttatgaaact gtaaaacaaa atctttggga gctttctccc ttaatatatt 2160 gagggcctca gctttggacc ctgaattgat tgcctcggca tatgcgtcgt tggcagattg 2220 gcaacctcct ctagctgatc ttccatcgac ctggaaaatt ccatgatcaa gcacgtctcc 2280 gtctttctcc atataggttt tgacatctgt tgagctctta gctccctgaa tgttcggatg 2340 gaaatgtgct gacctggttg gggatgtgag gtcgaagaat ctgttatttt tacattggaa 2400 ttttccttcg aattggatga gaatgtgcag gtgaggagcc ccatcttcgt gaagctctct 2460 gcaaacccta atgaatagct tatttgttgg ggtttgtaga gcttgtattt gggaaagtgc 2520 ctcttctttg gttagggagc agtgtggata tgtgaggaag tagttcttcg catttatcct 2580 gaatttatta agtggatgca tgttgacttg gtcaatcggt gtctctcaaa cttctctatg 2640 tatcggtgta ttggggtctt atttatacct ggacactaaa tggcatttat gtaattacat 2700 aaatttacca atgggtaaag cggccatccg tttaatatt 2739 //