ID U87832; SV 1; circular; genomic RNA; STD; VRL; 6509 BP. XX AC U87832; XX DT 22-FEB-1997 (Rel. 51, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Oat blue dwarf virus complete genome. XX KW . XX OS Oat blue dwarf virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Marafivirus. XX RN [1] RP 1-6509 RX DOI; 10.1006/viro.1997.8555. RX PUBMED; 9185605. RA Edwards M.C., Zhang Z., Weiland J.J.; RT "Oat blue dwarf marafivirus resembles the tymoviruses in sequence, genome RT organization, and expression strategy"; RL Virology 232(1):217-229(1997). XX RN [2] RP 1-6509 RA Edwards M.C.; RT ; RL Submitted (29-JAN-1997) to the INSDC. RL Cereal Crops Research Unit, USDA-ARS, Northern Crop Science Laboratory, RL Fargo, ND 58105-5677, USA XX DR MD5; 4c63bfb7b7f02681da907528c0b7fb8a. DR EuropePMC; PMC112128; 10864632. XX FH Key Location/Qualifiers FH FT source 1..6509 FT /organism="Oat blue dwarf virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:56879" FT CDS 115..6315 FT /codon_start=1 FT /product="replicase-associated polyprotein" FT /note="putative 227 kDa polyprotein possessing sequence FT motifs similar to methyltransferase, papain-like protease, FT helicase, and polymerase motifs that arepresent in the FT nonstructural proteins of other positive strand RNA FT viruses" FT /db_xref="GOA:P89920" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:P89920" FT /protein_id="AAC57874.1" FT /translation="MTTYAFHPLLPTPTSFATITGGGLKDVIETLSSTIHRDTIAAPLM FT ETLASPYRDSLRDFPWAVPASALPFLQECGITVAGHGFKAHPHPVHKTIETHLLHKVWP FT HYAQVPSSVLFMKPSKFAKLQRGNANFSALHNYRLTAKDTPRYPNTSTSLPDTETAFMH FT DALMYYTPAQIVDLFLSCPKLEKLYASLVVPPESSFTSISLHPDLYRFRFDGDRLIYEL FT EGNPAHNYTQPRSALDWLRTTTIRGPGVSLTVSRLDSWGPCHSLLIQRGIPPMHAEHDS FT ISFRGPRAVAIPEPSSLHQDLRHRLVPEDVYNALFLYVRAVRTLRVTDPAGFVRTQCSK FT PEYAWVTSSAWDNLAHFALLTAPHRPRTSFYLFSSTFQRLEHWVRHHTFLLAGLTTAFA FT LPPSAWLANLVARASASHIQGLALARRWLITPPHLFRPPPPPSFALLLQRNSTGPVLLR FT GSRLEFEAFPSLAPQLARRFPFLARLLPQKPIDPWVVASLAVAVAIPAASLAVRWFFGP FT DTPQAMHDRYHTMFHPREWRLTLPRGPISCGRSSFSPLPHPPSPTPAPDSRAEPLQPPS FT APPSTHEPAPADLEPQAPPAHAPQTEPPSPVIEQEARPNPLPAPAPLSAPTPSASAPSL FT APTPSAPEPPSPTASEQAASLIPAPSSALVVEPSGVVSASSWGATNQPADQVDDSPLAR FT DPSASGPVRFYRDLFPANYAGDSGTFDFRARASGRSPTPYPAMDCLLVATEQATRISRE FT ALWDCLTATCPDSFLDPKSIAQHGLSTDHFVILAHRFSLCANFHSAEHVIQLGMADATS FT IFMINHTAGSAGLPGHFSLRLGDQPRALNGGLAQDLAVAALRFNISGDLLPTRSVHTYR FT SWPKRAKNLVSNMKNGFDGVMASINPIRPSDAREKIVALDGLLDIARPRSVRLIHIAGF FT PGCGKTHPITKLLHTAAFRDFKLAVPTTELRSEWKELMKLSPSQAWRFGTWESSLLKSA FT RILVIDEIYKLPRGYLDLAIHSDSSIEFVIALGDPLQGEYHSTHPSSSNSRLIPEVSHL FT APYLDYYCLWSYRVPQDVAAFFQVQSHNPALGFARLSKQFPTTGRVLTNSQNSMLTMTQ FT CGYSAVTIASSQGSTYSGATHIHLDRNSSLLSPSNSLVALTRSRTGVFFSGDPALLNGG FT PNSNLMFSAFFQGKSRHIRAWFPTLFPTATLLFSPLRQRHNRLTGALAPAQPSHLLLPD FT LPSLPPLPASGPYSRSFPVRSRFAAAVKPSDRSDVLSWAPIAVGDGETNAPRIDTSFLP FT ETRRPLHFDLPSFRPQAPPPPSDPAPSGTAFEPVYPGETFENLVAHFLPAHDPTDREIH FT WRRQLSNQFPHVDKEYHLAAQPMTLLAPIHDSKHDPTLLAASIQKRLRFRPSASPYRIS FT PRDELLGQLLYESLCRAYHRSPTTTHPFDEALFVECIDLNEFAQLTSKTQAVIMGNARR FT SDPDWRWSAVRIFSKTQHKVNEGSIFGAWKACQTLALMHDAVVLLLGPVKKYQRVFDAR FT DRPAHLYIHAGQTPSSMSLWCQTHLTPAVKLANDYTAFDQSQHGEAVVLERKKMERLSI FT PDHLISLHVHLKTHVETQFGPLTCMRLTGEPGTYDDNTDYNLAVINLEYAAAHVPTMVS FT GDDSLLDFEPPRRPEWVAIEPLLALRFKKERGLYATFCGYYASRVGCVRSPIALFAKLA FT IAVDDSSISDKLAAYLMEFAVGHSLGDSLWSALPLSAVPFQSACFDFFCRRAPRDLKLA FT LHLGEVPETIIQRLSHLSWLSHAVYSLLPSRLRLAILHSSRQHRSLPEDPAVSSLQGEL FT LQTFHAPMPSLPSLPLFGGLSPDNILTPHEFRTALYESSAYPTPPNSPTSMSGIHASQV FT GPPPASDDRTDRQPSLPLAPRIVESSLAVPHVDVPFQWAVASYAGDSAKFLTDDLSGSS FT HLSRLTIGYRHAELISAELEFAPLAAAFAKPISVTAVWTIASIAPATTTELQYYGGRLL FT TLGGPVLMGSVTRIPADLTRLNPVIKTAVGFTDCPRFTYSVYANGGSANTPLITVMVRG FT VIRLSGPSGNTVTAT" FT CDS 5710..6315 FT /codon_start=1 FT /product="21 kDa capsid protein" FT /note="putative start site; believed to be translated from FT a subgenomic RNA" FT /db_xref="GOA:P89921" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:P89921" FT /protein_id="AAC57875.1" FT /translation="MSGIHASQVGPPPASDDRTDRQPSLPLAPRIVESSLAVPHVDVPF FT QWAVASYAGDSAKFLTDDLSGSSHLSRLTIGYRHAELISAELEFAPLAAAFAKPISVTA FT VWTIASIAPATTTELQYYGGRLLTLGGPVLMGSVTRIPADLTRLNPVIKTAVGFTDCPR FT FTYSVYANGGSANTPLITVMVRGVIRLSGPSGNTVTAT" XX SQ Sequence 6509 BP; 1056 A; 2788 C; 1287 G; 1378 T; 0 other; gtgtcccagt gtcattattc cgctcagttt cagatctgcc ggaattctcc aagcatcccg 60 ccccaaaagc cggctgctta aaatctgatc ttctccatct tgtcaagtgt cgttatgacc 120 acatacgcct tccacccgct gctccccacc ccgacctcct tcgccactat cactgggggt 180 ggtttgaagg atgttatcga aaccctctcg tccaccatcc acagagacac gatcgcagca 240 cccctcatgg agaccctcgc ctcgccttac cgagactccc ttcgcgactt cccttgggcc 300 gtccccgcct ccgccctgcc cttcctccag gaatgtggca tcacggtcgc cggccacggt 360 ttcaaagctc atccccaccc tgtccacaaa accatcgaga cccacctcct ccacaaggtt 420 tggcctcact atgcccaagt cccttcttcc gtcctcttca tgaagccctc gaagttcgcc 480 aaactccagc ggggcaacgc caacttctcc gcactccaca actatcgcct caccgccaaa 540 gacaccccgc ggtatcctaa cacttcaacc tctctccccg acaccgagac cgccttcatg 600 catgacgccc tcatgtatta cacccccgct caaattgttg acctgttcct ttcctgcccg 660 aagctcgaga aactgtacgc ctcccttgtc gtcccccccg agtcctcctt cacctctatc 720 tctctccatc cagatcttta ccgctttcgc tttgacgggg accgtttgat ttatgagttg 780 gagggcaacc ccgcccacaa ctacacccaa cctcgatccg ccctcgactg gctccgcaca 840 accaccatcc gcggaccagg cgtttctctc accgtgtcca ggctcgactc gtggggtccc 900 tgccattccc tcctcatcca gcgcggcatt ccccccatgc acgccgagca cgactccatc 960 tcgttcaggg gtccacgcgc cgtcgccatt cccgagccct cctccctcca ccaggatctg 1020 cgccaccgtc tcgttccaga ggacgtgtat aacgccctct tcctctacgt ccgcgctgtc 1080 cgcacgctcc gcgtaaccga tcccgccggc tttgtccgca cccagtgctc taagcccgag 1140 tacgcttggg tcacttcctc cgcttgggac aacttggccc acttcgccct cctcaccgct 1200 ccacaccggc cccgcacctc gttctaccta ttctcctcta ccttccagcg ccttgagcac 1260 tgggtccgcc atcacacctt cctcctcgcc ggcctcacca cagcctttgc tctcccgccg 1320 tctgcctggc tcgcgaacct cgtcgcccgc gcctccgctt cacacatcca aggcctcgcg 1380 ctagcccgcc ggtggctcat cactccccct catctcttcc gcccccctcc acccccaagc 1440 ttcgctcttc ttctccagcg caactccacc ggcccggtcc ttctccgtgg ctcccgcctc 1500 gagtttgagg ccttcccttc tctcgcccca caactcgccc gtcgctttcc attcctcgct 1560 cgccttctcc cccagaaacc catcgacccc tgggtcgtcg cgagcctcgc tgtcgccgtt 1620 gctatacccg ccgcctccct cgccgttcgc tggttcttcg gccccgacac cccccaagcc 1680 atgcacgacc gataccacac catgttccac cccagagagt ggcgcctcac cctgcccagg 1740 ggccccatct catgtggccg ctccagcttc tccccccttc cccacccacc ttcgcccact 1800 cccgctcccg actcccgagc tgaacccctc cagccaccct ccgctccacc ctcgacccac 1860 gagccggctc ccgccgatct cgagccccaa gctcctccgg cccacgcccc ccagaccgag 1920 cctccgagtc ccgtgatcga gcaagaagcg cgtccgaatc cccttcccgc tcctgccccg 1980 ctttctgctc ccaccccctc cgcttccgcg ccttcacttg ccccaacacc ctcggccccc 2040 gagcctccct cgccgaccgc ttccgagcag gccgcgtccc tcatccctgc tccctcttcc 2100 gccctcgtcg tggagccatc cggcgtcgtc tctgcctcat cttggggcgc caccaaccag 2160 ccggccgatc aagtcgatga ctcccctctc gctcgcgatc ccagcgcctc cggccccgtc 2220 cgcttctatc gagacctctt ccccgccaac tacgcgggtg attccggcac cttcgacttc 2280 cgcgcccgcg cctcaggccg ctctcccacc ccataccccg ccatggattg cctcctcgtc 2340 gccaccgagc aagccacccg catctctcga gaggccctct gggactgcct cacagccacc 2400 tgccccgact cattcctcga ccccaagagc atcgcccagc atggcctcag caccgatcac 2460 ttcgtcatcc tcgctcatcg cttttcccta tgtgccaact tccactccgc cgagcacgtc 2520 attcagctcg ggatggccga tgccacctcc attttcatga tcaaccacac ggctggctcc 2580 gcgggcctcc cgggccactt ctccctccgc ctgggtgacc agccccgtgc cctcaacggt 2640 ggcctcgctc aggacctcgc cgtcgccgcc ctccgattca acatctccgg tgatctcctc 2700 ccaacccgat ccgttcacac ttacaggtct tggccaaagc gcgccaagaa ccttgtgtcc 2760 aacatgaaga acggctttga cggagtcatg gccagcatca acccgatccg acccagcgat 2820 gctcgcgaga agatcgtcgc cctcgacggt ctcctagaca ttgcccgacc ccgatccgtc 2880 cgcctcatcc acattgctgg tttcccaggc tgcggaaaaa cacatccgat caccaagctc 2940 ctccacaccg ccgccttccg cgacttcaaa ctcgccgtcc cgaccaccga gctccggtct 3000 gagtggaaag agctcatgaa gctctcaccc tctcaggcct ggcgcttcgg cacctgggag 3060 tcctcccttc tcaagagcgc caggatcctc gtgatcgatg agatctacaa gttgccccga 3120 gggtacctcg acctagccat ccactccgac tcgtccatcg agtttgttat cgccctggga 3180 gatcctctgc aaggcgagta tcactccact catcccagct cctccaactc tcgcctcatt 3240 cccgaagtca gccatctcgc tccctacctc gactactact gcctctggag ttaccgcgtc 3300 ccccaagacg tcgccgcttt cttccaggtt cagagccaca accctgctct cgggtttgcc 3360 cgtctctcga agcagtttcc cacgaccggg cgcgtcctca ccaactcaca gaactcgatg 3420 cttaccatga cgcagtgcgg ctactctgcc gtcaccattg cctcaagcca gggttccacc 3480 tacagcggcg ccacgcacat ccaccttgac cgcaactcat cgctcctctc cccttcgaac 3540 tccctcgtcg ccctcactcg ctcgagaacc ggcgtgttct tctccgggga ccctgctctt 3600 ctcaacggtg gtcccaactc caacctcatg ttctctgcct tctttcaggg caagtctcgc 3660 cacattcgcg cctggttccc cacccttttc cctacggcca ctctcctctt ctcccccctc 3720 cgccaacgcc acaaccgcct cactggcgcc ctcgctcccg cccaaccttc ccacctcctg 3780 ctccctgacc ttccgagcct ccctcctctc cccgcctccg gtccctactc ccgctcattc 3840 ccagttcgat ctcgcttcgc cgcggccgtc aagccttccg accggtcaga cgtcctctcg 3900 tgggccccta tcgccgtcgg tgacggggaa accaacgccc ctcgcattga cacctccttc 3960 ctgcccgaaa ctcgccgccc gcttcatttt gatcttccct cgttccgccc ccaagcccca 4020 ccgcctccct ctgacccagc cccttctggg accgcctttg agcccgttta ccccggcgaa 4080 accttcgaaa atttggtcgc ccacttcctt ccggctcacg accccactga ccgcgaaatc 4140 cactggcgtc ggcagctttc caaccagttt ccccatgtcg ataaggagta ccacctcgcg 4200 gctcagccaa tgacgctcct cgctcccatc cacgactcca agcacgaccc caccctcctt 4260 gccgcctcca tccagaaacg acttcgattt cgaccctccg cctctcccta ccgaatctcc 4320 cctcgtgacg agctgcttgg ccagctcctc tacgagagtc tctgccgcgc gtatcatcgt 4380 tccccaacca ccacccaccc tttcgatgag gccctcttcg tcgagtgtat cgacctgaac 4440 gaattcgctc aactcaccag caaaactcag gccgtcatca tgggcaacgc ccgccgctct 4500 gacccagact ggcgctggtc cgccgtccgg atcttcagca aaacccagca caaggtcaac 4560 gaaggttcga tctttggagc ctggaaagct tgccagaccc tcgctctcat gcacgacgcc 4620 gtcgttctgc tccttggccc cgtcaagaag tatcaacgcg tcttcgatgc tcgagaccgc 4680 cccgcccacc tctacatcca cgccggccag acgccctctt ccatgagcct gtggtgccag 4740 acccacctca cccccgctgt caagctcgcg aacgactaca ccgctttcga ccagtctcag 4800 catggcgagg ccgtcgtcct cgagagaaag aagatggaac gcctttccat cccggatcac 4860 ctcatctccc tccacgttca ccttaagacc catgtcgaaa cccagtttgg ccctctcacc 4920 tgcatgcgcc taaccggcga gcctggcacc tacgacgaca acactgacta taacctcgcc 4980 gtcatcaacc tcgagtacgc ggctgcccac gtcccgacca tggtctcggg cgacgattca 5040 ctccttgact tcgagccccc acgccgccca gagtgggtcg ccatcgaacc tcttttagcc 5100 ctccgcttca agaaggagcg cggtctgtat gccaccttct gcggctacta cgcctcgcga 5160 gttggctgcg tccgatctcc catcgccctc ttcgctaagc tcgccatcgc cgtcgacgac 5220 tcatccatct ccgacaagct cgccgcatac ctcatggagt tcgcggtcgg tcactctctc 5280 ggcgactctc tttggtccgc cctccccctg tccgccgtcc cctttcagtc agcctgtttc 5340 gatttcttct gccgccgcgc tccccgcgat ctaaagctcg cccttcacct gggcgaagtc 5400 cctgaaacca tcatccaacg cctctcccac ctctcctggc tatcccacgc cgtctacagc 5460 ctcctcccat ctcgccttcg cctcgccatc cttcacagct cacgccagca ccgttccctc 5520 cccgaagacc cagccgtttc ttcgcttcag ggtgaattgc ttcagacgtt ccatgctcca 5580 atgccctctc tcccttcact cccactcttc ggcggtctat ctcccgacaa catcctcact 5640 ccccacgagt tccgcaccgc cctctacgaa agctccgcct accctactcc tcccaactct 5700 ccgacctcca tgtcaggaat ccatgcctcg caagttggtc cgccccccgc cagcgatgat 5760 cgcactgacc gccagccttc tcttcctctt gctcctcgta ttgtggagag ctctctcgcc 5820 gtgccgcacg tcgacgtccc gttccaatgg gccgtcgcgt cgtacgccgg agactccgcc 5880 aagttcctca ccgacgacct ctcaggatcc tctcacctga gccgcctcac catcggctat 5940 cgccacgccg agctcatctc cgccgagctc gagttcgccc cccttgccgc cgccttcgcc 6000 aagcccatct ccgtcaccgc cgtctggacc atagcctcca tcgccccagc caccaccacc 6060 gagctccagt actacggtgg ccgactcctc accctcggag gccccgtcct catgggctcc 6120 gtcacccgca tcccagccga cctcacccgc ctcaaccccg tcatcaagac cgccgtgggc 6180 ttcactgact gcccccgctt cacctactcc gtctatgcca acggcgggtc cgccaacact 6240 cctctcatca ccgtcatggt gcgaggagtt atccgcctct ccggcccttc gggcaacacc 6300 gtcaccgcca cctaagccct ctcaccggtt tcaacaggag tttcttcctc gttcttctcc 6360 tgacgaccaa tgaacgttgc ttatcccccc ttcacatccc tccgtttccc cctccgtttt 6420 cctctctgtt ccattccccc tctccctccc cgtctcagca atgagtaagg ttccaggtcg 6480 attcaaagac ctgatgggat tttcctcgg 6509 //