ID U80935; SV 1; circular; genomic RNA; STD; VRL; 4776 BP. XX AC U80935; XX DT 25-DEC-1996 (Rel. 50, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 6) XX DE Tomato bushy stunt virus pepper isolate, complete genome. XX KW . XX OS Tomato bushy stunt virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Tombusvirus. XX RN [1] RP 1-4776 RX PUBMED; 9621100. RA Havelda Z., Szittya G., Burgyan J.; RT "Characterization of the molecular mechanism of defective interfering RT RNA-mediated symptom attenuation in tombusvirus-infected plants"; RL J. Virol. 72(7):6251-6256(1998). XX RN [2] RP 1-4776 RX DOI; 10.1016/S0168-1702(00)00178-7. RX PUBMED; 11018282. RA Szittya G., Salamon P., Burgyan J.; RT "The complete nucleotide sequence and synthesis of infectious RNA of RT genomic and defective interfering RNAs of TBSV-P"; RL Virus Res. 69(2):131-136(2000). XX RN [3] RP 1-4776 RA Szittya G., Burgyan J.; RT ; RL Submitted (04-DEC-1996) to the INSDC. RL Institute for Plant Sciences, Agricultural Biotechnology Center, RL Szent-Gyorgyi street 4. P.O. Box 411, Godollo H-2101, Hungary XX DR MD5; 47832157bc477b30c67b304502cf3bea. DR EuropePMC; PMC110454; 9621100. DR EuropePMC; PMC136688; 12438600. DR EuropePMC; PMC1370487; 13130137. DR EuropePMC; PMC3234231; 22174683. DR EuropePMC; PMC516415; 15367615. DR RFAM; RF00171; Tombus_5. DR RFAM; RF00176; Tombus_3_IV. DR RFAM; RF00215; Tombus_3_III. DR RFAM; RF00510; Tombus_IRE. XX FH Key Location/Qualifiers FH FT source 1..4776 FT /organism="Tomato bushy stunt virus" FT /isolate="pepper" FT /mol_type="genomic RNA" FT /db_xref="taxon:12145" FT CDS 167..1057 FT /codon_start=1 FT /product="33K protein" FT /note="TBSV-P ORF1" FT /db_xref="GOA:P90340" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:P90340" FT /protein_id="AAC32731.1" FT /translation="METIKRMIWPKKEIFVGDFAIGVNRTAPVDIFQLVCRVVLRYMRT FT GKIDCDSDSMTKFIVELLKTDCAAKWEWFMKRRQRGDYVIPLSIAAIPIIPLLSYATWV FT RAVSVRAFGNELSFNVRVPRPSVPKKGLLLRLAAGLAFRPICALAVYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLITGSRLTKVIASTGTPRRRPYAAK FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVK" FT CDS 167..2623 FT /codon_start=1 FT /transl_except=(pos:1055..1057,aa:OTHER) FT /product="92K protein" FT /note="TBSV-P ORF2; fusion gene of the first 2 TBSV-P ORFs; FT translation product of terminator readthrough at UAG FT terminator of ORF1" FT /db_xref="GOA:P89211" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:P89211" FT /protein_id="AAC32730.1" FT /translation="METIKRMIWPKKEIFVGDFAIGVNRTAPVDIFQLVCRVVLRYMRT FT GKIDCDSDSMTKFIVELLKTDCAAKWEWFMKRRQRGDYVIPLSIAAIPIIPLLSYATWV FT RAVSVRAFGNELSFNVRVPRPSVPKKGLLLRLAAGLAFRPICALAVYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLITGSRLTKVIASTGTPRRRPYAAK FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVKXGGLVRLPGVVTQINRDIPSDVLLPQEVLEVRAGPPNAKDRNIF FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVERNGKLARAPQPTKGAFGRLSPFRKAV FT CEKVGVAHRLGYDGFLSYYDGAKLRTYTRAVESLHITPVSERDSHLTTFVKAEKISTSK FT GDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYSADEVGAIFREK FT WDRFDKPVAIGLDAWRFDQHCSVEALQYEHSFYRAMYPGNKLLGKLLEWQLHNKGKGYV FT PDGTITYRKEGCRMSGDINTSLGNYLLMCAMVHGYMRHLGINEFSLANCGDDCVLILER FT RNLKQVQRTLPEYFLNLGYTMKVERPVFQLEEVEFDQAHPVQFQGGWKMVGNVRTAMRK FT DVHCVNNIRDLATRRAWSNAQHHGGLALRAGIPVVETFYSRFKLYDTPRKHQRIDTVTN FT VHKWRGSGGSYVVTPESRASFWAAFCLTGDEQLALEDRLERWEMDLFGEEGVDAHEPSI FT LDSAVA" FT CDS 2653..3819 FT /codon_start=1 FT /product="41K protein" FT /note="TBSV-P ORF3" FT /db_xref="GOA:P89212" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:P89212" FT /protein_id="AAC32732.1" FT /translation="MAMVRRNNNTGMIPVSTKQLLALGAAAGATALQGYVKNNGMAIVK FT GAVYLTKREYKAVRRRGGKKQQMINHVGGTGGAIMAPVAVTRQLVGSKPKFTGRTSGSV FT TVTHREYLSQVNNSTGFQVNGGIVGNLLQLNPLNGTLFSWLPAIASNFDQYTFNNVVLH FT YVPLCSTTEVGRVAIYFDKDSEDPEPADRVELANYSVLKETAPWAEAMLRVPTDKIKRF FT CDDSSTSDHKLIDLGQLGIATYGGAGTNAVGDIFICYSVTLYFPQPTNTLLSTRRLDLA FT GALVTASGPGYLLVSRTATVLTMTFRATGTFVISGTYRCLTATTLGLAGGVNVNSITVV FT DNIGADSAFFINCTVSNLPSVVTFTSTGITSATVHCVRATGQNDVSLI" FT CDS 3857..4426 FT /codon_start=1 FT /product="22K protein" FT /note="TBSV-P ORF4" FT /db_xref="GOA:Q76S74" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/TrEMBL:Q76S74" FT /protein_id="AAC32733.1" FT /translation="MDTEYEQVNKPWNELYKETTLGNKLTVNVGMEDQEVPLLPSNFLT FT KVRVGLSGGYITMRRIRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTESLDLGREI FT RLTMQHLDFSVSTRSDVPIVFGFEELVSPFLEGRELFSISVRWQFGLSKNCYSLPQSKW FT KVMYQEDALKVLKPSKKKASKTDSSV" FT CDS 3889..4407 FT /codon_start=1 FT /product="19K protein" FT /note="TBSV-P ORF5" FT /db_xref="GOA:P89213" FT /db_xref="InterPro:IPR004905" FT /db_xref="InterPro:IPR036131" FT /db_xref="UniProtKB/TrEMBL:P89213" FT /protein_id="AAC32734.1" FT /translation="MERAIQGNDAREQANSERWDGGSGSSTSPFQLPDESPSWTEWRLH FT NDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFFG FT VNQIGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEVESNVSRGCPEG FT VETFEEESE" XX SQ Sequence 4776 BP; 1255 A; 966 C; 1322 G; 1233 T; 0 other; agaaattccc caggatttct cgacctagta cgtctacctg gtgacttgcg ctgtctgttg 60 ctttgcgtag ggaatttctc tccaatatta ttatctttaa tttggggttt gaaggttggg 120 tctacccttc ggggggataa attgtaactt ccaacaaata agcgacatgg agaccattaa 180 gaggatgatc tggcctaaga aagagatttt tgtgggtgat ttcgcgatcg gagttaatag 240 gacggcaccg gtggacattt tccaattggt gtgtcgtgtg gttctaagat acatgaggac 300 agggaaaata gactgtgatt ctgacagcat gactaagttt atagttgaat tacttaaaac 360 tgattgtgct gccaaatggg agtggtttat gaagagacgg cagaggggcg actatgttat 420 ccctctatct atagccgcca tcccaatcat accgctgttg agttatgcca catgggtacg 480 cgcagtctca gtcagggcct ttgggaatga actttcgttc aatgtcagag tacctagacc 540 atctgtacct aagaaaggat tgctcctcag actggcggca ggcctagcgt tcagacctat 600 atgcgcgctg gcagtgtacg ctaccctacc tagggaaaaa ctgtcggtat ttaagctgag 660 aaccgaggca cgcgcacata tggaggatga gagagaagcg acagattgct tggtggttga 720 gccggcacgg gaactcaagg gtaaggatgg tgaggatctc atcactggta gtagattaac 780 taaggtgatt gcgtccacag ggacgcctcg caggaggccg tatgcagcca agatcgcaca 840 ggttgcgaga gctaaggtgg gttaccttaa gaatagtcct gagaatagac taatctacca 900 gcgagtgatg attgagatca tggacaaaga ctgcgtcagg tatgttgaca gggatgtcat 960 attgccattg gctattggat gctgttttgt ctatccggat ggagtggagg agtcggcggc 1020 actatggggt tcccaggaat cccttggtgt caaataggga ggcctagtac gtctacctgg 1080 tgttgtaaca cagatcaatc gagatatccc atctgatgtg ttacttcccc aggaggtgct 1140 agaggttcgt gcaggacctc ccaatgctaa ggaccgtaat atatttatgg ttgcaggttg 1200 cccatcacag gcacggttct tagtacataa tcactgcctg aaaaacctta aaaggggtct 1260 tgtggagaga gtcttctgcg tagagagaaa cgggaagctc gctcgcgctc cacaacctac 1320 caaaggagct tttggacgtc tttccccgtt caggaaagcg gtttgtgaga aggttggggt 1380 agcccaccga cttgggtatg atgggtttct gtcatactac gacggtgcga aactccgtac 1440 ttacacacga gccgtggaga gtctgcatat cacacctgtt tccgagaggg atagtcattt 1500 gactaccttc gtgaaagcag agaagatatc gacgtctaaa ggtgacccag cacctcgggt 1560 gattcagcct cgaaacccga ggtacaatgt ggaacttgga agatatctac ggcatatgga 1620 atccaagctg atgaaagctg ttgatggcgt gttcggagaa acaacatgca tcaaaggata 1680 ctctgccgac gaggtgggtg caatttttcg ggagaaatgg gataggtttg ataaacctgt 1740 agccataggt ctcgatgcat ggaggtttga tcaacactgt tccgtggagg ctttgcaata 1800 tgagcatagt ttctacaggg ccatgtaccc tggcaacaag cttttgggca agttgttgga 1860 atggcaactc cataataaag gtaaaggtta tgtccctgat gggactataa cttatcgtaa 1920 ggagggttgt cgtatgagtg gggatataaa cacttcgttg gggaactatc tgttgatgtg 1980 tgcaatggta catgggtaca tgcgtcattt ggggattaat gaatttagtc tggcgaactg 2040 tggggatgat tgcgttctca ttcttgagcg caggaatctt aaacaggtgc agagaactct 2100 gcctgagtat ttccttaatt tgggttatac catgaaggtt gagcgacctg tatttcaatt 2160 ggaagaggtt gaatttgacc aggcacaccc agtacagttt caagggggtt ggaagatggt 2220 gggaaatgtc cgtactgcta tgagaaaaga cgtgcactgt gtcaataata tacgcgattt 2280 ggcgacgagg agagcttgga gtaatgctca acatcatgga gggctagcac ttagggctgg 2340 tatacctgtg gttgagactt tttactccag gttcaagctg tatgatacac ctcgtaagca 2400 tcaacgcatt gacacagtca ctaatgttca taagtggcgt ggatcgggtg ggagctatgt 2460 tgtgacccct gaatcaagag ctagcttttg ggctgctttt tgcctcacgg gggatgagca 2520 actggctctg gaggatcgtc tggagagatg ggagatggat ctattcggag aggagggtgt 2580 tgacgctcat gagcccagca tccttgactc cgccgtagct tgaccaagga tacacaaacg 2640 caggatagac acatggcaat ggtgagaaga aacaacaata cgggaatgat cccggtgagt 2700 acgaagcaat tactggcatt gggtgcggcc gctggggcca cagccttaca gggatatgtc 2760 aagaataatg ggatggccat cgtgaagggg gctgtctatc tgactaaaag agagtacaaa 2820 gcagtgcgga gaagaggagg taagaaacag cagatgatta atcatgtagg tgggacaggt 2880 ggtgctataa tggcgccggt tgcagtcacc agacaacttg ttggtagtaa gcctaagttt 2940 actggcagga cgtctgggtc tgtaacagtc acccaccgtg agtatctgtc acaagtgaat 3000 aattccacag gtttccaggt taatggggga attgtcggca atttgttaca actcaacccg 3060 ttgaatggta cattgttctc ttggttgcca gcaatagcat ccaattttga ccagtacaca 3120 tttaacaatg ttgtgttaca ttatgtcccc ctatgttcca ccactgaggt ggggagagtg 3180 gctatttact ttgataagga ctcagaagat cctgagcctg ctgatagagt tgagttggcg 3240 aattacagcg tgcttaaaga gacagcccct tgggctgaag cgatgctcag agtacccaca 3300 gataagatta agagattttg tgatgacagt tcaacatctg atcacaagct tatcgacctg 3360 ggtcagttgg gtattgctac atatggtggc gctgggacta acgctgttgg ggatatcttt 3420 atctgttaca gtgttacgtt atatttccct caacctacaa atacactcct tagtaccaga 3480 aggctcgacc ttgctggcgc tcttgtcaca gcatccggtc cggggtacct cttggtgtct 3540 cggactgcca ctgtcttgac gatgacattt cgtgcaactg gtacgtttgt catatccggt 3600 acgtacaggt gccttacagc aacaacacta ggcttggcag gcggggtgaa cgtcaatagt 3660 atcacagtag tcgacaatat aggtgctgac agtgcatttt tcataaattg cactgtctct 3720 aacctaccat ctgtggtgac gttcacatct accggcatca catcagccac agtacattgc 3780 gtgcgtgcaa ccggacagaa tgatgtttct ctaatctagt gtgtcctgcg aggggcctgt 3840 tgaacaagac cagttcatgg atactgaata cgaacaagtc aataaaccat ggaacgagct 3900 atacaaggaa acgacgctag ggaacaagct aacagtgaac gttgggatgg aggatcagga 3960 agttccactt ctcccttcca acttcctgac gaaagtccga gttggactga gtggcggcta 4020 cataacgatg agacgaattc gaatcaagat aatccccttg gtttcaagga aagctggggt 4080 ttcgggaaag ttgtatttaa gagatatctc agatacgaca ggacggaagc ttcattgcac 4140 agagtccttg gatcttggac gggagattcg gttaactatg cagcatctcg atttttcggt 4200 gtcaaccaga tcggatgtac ctatagtatt cggtttcgag gagttagtgt caccatttct 4260 ggagggtcga gaactcttca gcatctctgt gagatggcaa ttcggtctaa gcaagaactg 4320 ctacagctta ccccagtcga agtggaaagt aatgtatcaa gaggatgccc tgaaggtgtt 4380 gaaaccttcg aagaagaaag cgagtaagac agactcttca gtctgagttt gcggaaacga 4440 gtgtaaatct ggcatagcat acaggttact cttgttgggt tctagatgtt atgatgacga 4500 gtcggtcggg ctccgcgcta ggtttggtcg cctaggggat ggagatatgg aaagggtctc 4560 gtgtgctgtc agtcggtcga aagacgcgct tgcaacatgg gcctataacc ggataagtca 4620 tagcaatact agccaacatg aattggattc ctgtttacga aagttaggtg acacttgtgg 4680 aaacggacct ggacacggtt gatctcacct tcgggggggc tatagagatc gctggaagca 4740 ctaccggaca accggaacat tgcagcaatg cagccc 4776 //