Dbfetch
ID U75538; SV 1; linear; genomic RNA; STD; VRL; 2926 BP. XX AC U75538; XX DT 06-MAR-1997 (Rel. 51, Created) DT 06-AUG-2001 (Rel. 68, Last updated, Version 3) XX DE Tobacco streak virus putative viral polymerase and putative 2b protein DE genes, complete cds. XX KW . XX OS Tobacco streak virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-2926 RX DOI; 10.1007/s007050050366. RX PUBMED; 9687875. RA Scott S.W., Zimmerman M.T., Ge X.; RT "The sequence of RNA 1 and RNA 2 of tobacco streak virus: additional RT evidence for the inclusion of alfalfa mosaic virus in the genus Ilarvirus"; RL Arch. Virol. 143(6):1187-1198(1998). XX RN [2] RP 1-2926 RA Scott S.W.; RT ; RL Submitted (21-OCT-1996) to the INSDC. RL Clemson University, Plant Pathology & Physiology, Long Hall, Clemson, SC RL 29634-0377, USA XX DR MD5; cc7ff4323c13601ff414c5cb5440aeef. DR EuropePMC; PMC5491605; 28713347. XX FH Key Location/Qualifiers FH FT source 1..2926 FT /organism="Tobacco streak virus" FT /chromosome="RNA 2" FT /lab_host="Nicotiana glutinosa" FT /isolate="WC" FT /mol_type="genomic RNA" FT /db_xref="taxon:12317" FT 5'UTR 1..41 FT CDS 42..2444 FT /codon_start=1 FT /product="putative viral polymerase" FT /db_xref="GOA:P89678" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:P89678" FT /protein_id="AAB48409.1" FT /translation="MDLVIKNLIVYHLRRRIDIGTSFGIEPADYIDWVKVFLLKFIIEH FT TARFADFATIHTTMLLVLGEDDPNYVEKDTPIMEIDPFYLPYDDLDVDYTSLRVCGDED FT QSCSDRDELSDFISNISHIPEGTSWGSESDTSFVEHLETIQDIPTKCEIADKPVEEIPF FT DDDGKVVNDVWVDAELSNAPEISCDADIRACGFVSLRLLESSRGYPKWTPERVSSGLNP FT DLPVNSKPAVDEIFPHHHSVDDRFFQEWVETHDIDLEVTSCDLDMSTFNDWTKGVDTRL FT VPNMSVGGLSHRVPTQREALLAIKKRNMNVPELQSNFDHDDVLNRCVTRFITHVVDKTR FT LSKLNPISGEELHYFNQYLENKNPPLSEYKGPVPLVALDKYMHMIKTTLKPVEEDNLHI FT ERPIPATITYHKKGVVMMTSPYFLCAMVRLLYVLKSKFVVPTGKYHQIFQMNPELLKHS FT KEFKEIDFSKFDKSQGRLHHDVQFRLFLALGIPEHFVTTWFNSHEKSYIRDRDCGIGFS FT VDYQRRTGDACTYLGNTLVTLSVLSYVYDLSNPNILFVAASGDDSLIGSIEPLPREKED FT LCVSLFNFETKFPHNQPFICSKFLLVVECDDGSEEVLAVPNPLKLLQKLGPKNLQVTVL FT DDYYQSLCDILWVFNDADVCRRTAELAEYRRFKGTKKCLFLESALLSLPSLVANRMKFV FT RRTINLESSRACIRNDVYSDLVPHFDSRVSRCDDSDGVRTSTFDDRKSSKHASDKLRKT FT ECYGEARCRIKPRRNRKSESGAVQYSQSSGIETGKANSSRKGRIKLH" FT CDS 2170..2787 FT /codon_start=1 FT /product="putative 2b protein" FT /db_xref="GOA:P89679" FT /db_xref="UniProtKB/Swiss-Prot:P89679" FT /protein_id="AAB48410.1" FT /translation="MFIPILFLTLTLASADVMTLMESEPQPSTTESRPSMPPINSGKPS FT VTEKPGVELNPGETVKVKAEQFNTVNPVELKLEKRIPPGRVGSNCIDCAISNLPKAMFS FT VKVPKLNINFEVSDFPSSRLIFATLAQRVKSIPFIESLSFPSDIQRMQLRALGDVEVLI FT FIPKFGWKQILKLSDVVSGFDIPKIPSIAPKVESCVGDCLNS" FT 3'UTR 2788..2926 XX SQ Sequence 2926 BP; 820 A; 582 C; 637 G; 887 T; 0 other; gtgtattact gacacatatc tgggtcagaa cctcctgaaa tatggatctc gttatcaaaa 60 acctcattgt gtatcacttg agaagacgaa ttgacattgg cacgtcattc ggtattgagc 120 cggctgatta tattgattgg gtaaaagttt ttcttttgaa attcataata gaacatacag 180 ccaggtttgc tgattttgcc accattcaca ccacgatgtt gttagtactg ggtgaagatg 240 atccaaatta cgtagagaag gacactccaa taatggagat tgaccccttc tatttaccgt 300 atgatgatct tgacgtggac tatacttcat tgcgtgtgtg tggtgatgaa gaccaatcct 360 gttccgaccg tgatgaattg agtgatttta tatcaaacat ttcacacatc ccagagggta 420 cttcctgggg tagtgaatca gatacctctt ttgtcgagca tcttgaaaca attcaagata 480 taccgacaaa atgtgagatt gctgataaac cggtcgaaga aattccattt gacgatgatg 540 gtaaagtcgt aaatgatgta tgggttgatg ccgagctttc aaacgctccg gaaatctcct 600 gtgatgccga catacgcgct tgtggatttg tttccttacg cctcctggaa agttcccgag 660 gttatccgaa atggaccccc gaaagggtga gttcaggttt aaaccccgac cttcctgtta 720 attccaagcc cgcggttgat gagattttcc cccaccacca ctctgttgac gacagattct 780 tccaagaatg ggttgaaacc catgacattg acttggaagt cacgagttgc gacctcgata 840 tgtccacatt taatgattgg acaaaagggg ttgacactcg attggtacca aacatgagtg 900 tcggtggttt gtcccacagg gttccaacac agcgtgaagc tttgttggca ataaagaaaa 960 ggaatatgaa tgttcctgaa cttcaaagca atttcgatca cgatgatgtt ttaaaccgat 1020 gtgttactag attcataaca catgtcgttg ataagactcg attatcgaaa ttgaatccga 1080 tatctggtga agagttacat tacttcaacc agtatttgga aaataaaaat ccgcctttaa 1140 gtgaatacaa aggcccggtg ccattggtgg ctttagataa gtatatgcac atgataaaga 1200 ccaccttgaa gccagtggaa gaggataacc tccacattga acgaccgatt cccgcgacta 1260 tcacttatca caagaaagga gttgtcatga tgacttctcc atattttctg tgcgcgatgg 1320 tcaggttgct ttatgtgtta aagtcaaaat ttgttgtgcc aactggaaaa taccaccaga 1380 tctttcaaat gaatcccgag ttgttgaaac actcgaagga atttaaagag attgattttt 1440 caaaattcga taaatctcaa ggtcgattac accatgatgt gcagtttcgt cttttcttag 1500 ctcttggtat accggagcat tttgtaacta cttggttcaa ttcccatgaa aaaagttaca 1560 ttagagatcg agactgcggt atcggatttt ccgttgatta tcagcgacga actggtgatg 1620 catgcaccta ccttgggaac actttggtaa cattaagtgt tctcagttat gtgtatgatt 1680 tatcaaatcc aaatatttta tttgttgccg ccagtggcga tgacagttta attggatcta 1740 ttgaaccctt accgcgtgaa aaagaggatt tgtgcgtgtc ccttttcaat tttgaaacaa 1800 aatttcctca caaccaacca ttcatttgtt cgaagttctt attggttgtt gagtgcgatg 1860 atgggtctga agaagtttta gcagttccca atcctctgaa acttcttcaa aaacttggtc 1920 ctaagaacct tcaagtcact gttttagatg actattatca aagtctttgt gacattttgt 1980 gggtttttaa tgatgccgac gtgtgtcgaa gaaccgccga attggcggaa tacagacgtt 2040 tcaaaggaac taagaaatgt ctgtttctgg agtccgctct tctgagcttg cctagtttag 2100 tggcgaacag gatgaaattt gttcgaagaa ctatcaattt agagagttct agagcttgta 2160 ttcgaaacga tgtttattcc gatcttgttc ctcactttga ctctcgcgtc agcagatgtg 2220 atgactctga tggagtccga acctcaacct tcgacgacag aaagtcgtcc aagcatgcct 2280 ccgataaact caggaaaacc gagtgttacg gagaagcccg gtgtagaatt aaaccccgga 2340 gaaaccgtaa aagtgaaagc ggagcagttc aatacagtca atccagtgga attgaaactg 2400 gaaaagcgaa ttcctcccgg aagggtagga tcaaattgca ttgactgtgc tatttccaac 2460 ttgccaaagg cgatgttctc tgtcaaggtt ccgaagttga atatcaactt cgaggtgtct 2520 gattttccgt cttcaaggtt aatatttgcc acgttagccc aaagagtgaa gtctattccc 2580 tttattgagt ctctgagttt tcccagcgat attcaaagga tgcagcttcg tgctctaggt 2640 gacgtagaag tcctcatctt cattccaaaa tttggttgga aacaaatttt gaaattgtct 2700 gatgtggttt ccgggtttga tatcccgaag atcccgtcca tagctcccaa agtggagtca 2760 tgtgtcggtg attgcctaaa ttcttgattt aggtatttcc tctcttatag agagatgccg 2820 ctttgcgaag atgtcagtag gtgggcgaaa catacgcttc tttatgtttt ctactgatat 2880 tccagttata tctaatgata taactgatgc ctccaaatgg agatgc 2926 //