ID U72332; SV 1; linear; genomic RNA; STD; VRL; 3879 BP. XX AC U72332; XX DT 06-DEC-1996 (Rel. 50, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 5) XX DE Saguaro cactus virus, complete genome. XX KW . XX OS Saguaro cactus virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Alphacarmovirus. XX RN [1] RP 1-3879 RA Xiong Z., Weng Z.; RT "Genome Organization and Gene Expression of Saguaro Cactus Carmovirus"; RL J. Gen. Virol. 0:0(1996). XX RN [2] RP 1-3879 RA Xiong Z., Weng Z.; RT ; RL Submitted (23-SEP-1996) to the INSDC. RL Department of Plant Pathology, University of Arizona, Forbes 204, Tucson, RL AZ 85721, USA XX DR MD5; 0fb782b5a67e7dce2c2bb037731660f0. DR EuropePMC; PMC3113551; 21645857. XX FH Key Location/Qualifiers FH FT source 1..3879 FT /organism="Saguaro cactus virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:52274" FT 5'UTR 1..39 FT CDS 40..2307 FT /codon_start=1 FT /transl_except=(pos:751..753,aa:OTHER) FT /gene="SCVP86" FT /product="SCVP86" FT /function="RNA-dependent RNA polymerase" FT /note="translation product of terminator readthrough at UAG FT terminator of SCVP26 ORF" FT /db_xref="GOA:P89107" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:P89107" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAB36710.1" FT /translation="MGILSELLVGTTLTGGLVAVGLAGLQLRIALKTVEVSVDLVRDAY FT EFVVDHTKTRPPLPVREHVLSITREDDPAPELELADCLEKIEDKETDEEGKTKVVRTRT FT TNRHARGSFLRRLIAEAKCHFGGTPTATRANELAAMKFLVGKCRDHHLVVLHTKEVCHA FT AMVGLFTPDDDEIAAMAQLNSHAAYVARVKLHSAVTVDPWWVKILRSGERTAGWQQLWW FT VLWGAPAQRGFTYHKXGGLSYLEGVCTKVWRGTHPNMIEVRRNALVRPRRLYYQQEIGT FT GLQYRVHNASYANLRRGLLERVFYVEDKVNKTLVPCPEPDRNAFKELAYLKRRLVRIVG FT LHTRISAAQVVDCYQGRKRTVYHNARLSLDEIPLDRRDSHLRTFTKAEKFCVDLKPDPA FT PRVIQPRSPRYNLQVARYLKKTEHHIYRGLDKIWGGPCVMKGYNVEEVASHIIGAWEQF FT QKPVAIGFDMSRFDQHVSVPALQFEHSIYQAIFKGDRELQQLLSWQLRNYGTGFAHDGL FT IRYKVDGCRMSGDMNTALGNCILACLITKHICRGLDARLINNGDDCVLICETRDVGRVV FT DKLTTAWLHFGFTCIAEEPVYEPEKIRFCQMAPVYDGEKWVMVRDPKVSLSKDAFSMVR FT WDTVKNAQQWFKAVGQCGLSIAGGVPIVQEFYRMYERAGGHVKLPVLKEVSASGLFHMS FT FNSNRAYSEISDAARFSFWKAFDILPDVQEATEAELRRTWISLDFGPAGDLNNPILEWT FT FL" FT CDS 40..753 FT /codon_start=1 FT /gene="SCVP26" FT /product="replication-related protein" FT /db_xref="UniProtKB/TrEMBL:P90337" FT /protein_id="AAB36707.1" FT /translation="MGILSELLVGTTLTGGLVAVGLAGLQLRIALKTVEVSVDLVRDAY FT EFVVDHTKTRPPLPVREHVLSITREDDPAPELELADCLEKIEDKETDEEGKTKVVRTRT FT TNRHARGSFLRRLIAEAKCHFGGTPTATRANELAAMKFLVGKCRDHHLVVLHTKEVCHA FT AMVGLFTPDDDEIAAMAQLNSHAAYVARVKLHSAVTVDPWWVKILRSGERTAGWQQLWW FT VLWGAPAQRGFTYHK" FT CDS 814..2307 FT /codon_start=1 FT /gene="SCVP57" FT /product="SCVP57" FT /note="theoretical protein that may be translated by FT initiation at an AUG codon downstream of the SCVP26 FT terminator" FT /db_xref="GOA:P90338" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:P90338" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAB36708.1" FT /translation="MIEVRRNALVRPRRLYYQQEIGTGLQYRVHNASYANLRRGLLERV FT FYVEDKVNKTLVPCPEPDRNAFKELAYLKRRLVRIVGLHTRISAAQVVDCYQGRKRTVY FT HNARLSLDEIPLDRRDSHLRTFTKAEKFCVDLKPDPAPRVIQPRSPRYNLQVARYLKKT FT EHHIYRGLDKIWGGPCVMKGYNVEEVASHIIGAWEQFQKPVAIGFDMSRFDQHVSVPAL FT QFEHSIYQAIFKGDRELQQLLSWQLRNYGTGFAHDGLIRYKVDGCRMSGDMNTALGNCI FT LACLITKHICRGLDARLINNGDDCVLICETRDVGRVVDKLTTAWLHFGFTCIAEEPVYE FT PEKIRFCQMAPVYDGEKWVMVRDPKVSLSKDAFSMVRWDTVKNAQQWFKAVGQCGLSIA FT GGVPIVQEFYRMYERAGGHVKLPVLKEVSASGLFHMSFNSNRAYSEISDAARFSFWKAF FT DILPDVQEATEAELRRTWISLDFGPAGDLNNPILEWTFL" FT CDS 1460..1621 FT /codon_start=1 FT /gene="SCVP57" FT /product="unknown1" FT /db_xref="UniProtKB/TrEMBL:P89108" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAB36712.1" FT /translation="MFLCPRYNLSTLSIRXYSKATVSSNNYYHGSCAIMVLDLPMTGLS FT GIRLTAVE" FT misc_RNA 2266..3879 FT /product="large subgenomic RNA" FT /note="sg1; for gene expression of SCVP6 and SCVP9 ORFs" FT /experiment="experimental evidence, no additional details FT recorded" FT CDS 2292..2471 FT /codon_start=1 FT /gene="SCVP6" FT /product="SCVP6" FT /db_xref="GOA:P89109" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:P89109" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAB36709.1" FT /translation="MDVPVDTELMVKPAGKRGKTKAKVDIAKDAVRKQAPSTTNGGNWV FT VVADKVEVHIAFNF" FT CDS 2377..2631 FT /codon_start=1 FT /gene="SCVP9" FT /product="SCVP9" FT /db_xref="GOA:P89110" FT /db_xref="UniProtKB/TrEMBL:P89110" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAB36711.1" FT /translation="MLCGNKHLALLMGVIGLLLLIRWRFILPSTFSLPPLVTLEQIIVL FT SFCGLLISCACKADTTLVWHYSDNNSKNQHITISTPNGR" FT misc_RNA 2483..3879 FT /product="small subgenomic RNA" FT /note="sg2; for gene expression of SCVCP ORF" FT /experiment="experimental evidence, no additional details FT recorded" FT CDS 2621..3655 FT /codon_start=1 FT /gene="SCVCP" FT /product="capsid protein" FT /db_xref="GOA:P89111" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:P89111" FT /protein_id="AAB36706.1" FT /translation="MDAKYGKDPRLAAAAATGAAWAVRFLNRGWASLSPKQKRTARSVL FT GLQNQPDVIVPVRPRATARVARPTRQGPGLAGKSMTITKCEYLSDIVSHVGTIPLTDHW FT VVNPGTIKTFPQTSLMASQFNKYRLTALRVRYTSTCSFETSGRVAIAFTNDSNDPLPTT FT KSQLYNFPVHIEAAATESKVLTIPCDNVYRFVRDDGVSDPKLVDFGRIVVCTYGSSAAD FT PATLGELFIEYTIVFSDPTYTSSLTQQGENQRSIGPRYATVDYESTRWECQLQAAGRWL FT VCWVSDSAIPSPSIVGVGAKGKVLTSSDSKCGIATVIAQAPYCSIVSTTVSAPSSLTWF FT VARL" FT CDS 2634..2861 FT /codon_start=1 FT /gene="SCVCP" FT /product="unknown2" FT /db_xref="GOA:P89112" FT /db_xref="UniProtKB/TrEMBL:P89112" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAB36713.1" FT /translation="MGRIRAWLLLLLLVQLGQCVFLIGVGLRSPRNRSAPLDLCWGCRI FT SLMLSCLYDLVLLLVSPGPLGRVPGLRGNP" FT 3'UTR 3656..3879 XX SQ Sequence 3879 BP; 898 A; 916 C; 1080 G; 980 T; 5 other; gggtaagctg ctgaatgctt atctctggtt gctctcacca tgggaatcct aagtgaactg 60 ctcgttggaa ccaccttaac aggtgggtta gttgcagtgg ggctggcagg cctgcaattg 120 cgcattgccc taaagactgt ggaagtttcc gttgacctgg tgcgggacgc gtatgaattt 180 gtagttgacc acacaaaaac gcgcccgcca ctgccggtaa gagagcatgt cctcagcata 240 acacgtgagg acgatcccgc tccagagctc gaattagctg actgcctcga gaagatcgag 300 gacaaggaga cggatgagga gggcaagaca aaggtggtgc gcactcgcac caccaaccgt 360 catgcccgtg gctcgttttt gcgccggttg attgcggagg ctaagtgcca ctttggtggc 420 acgcctaccg ctacccgcgc caacgagctt gctgccatga agttcttggt tggcaagtgc 480 cgagatcacc atctggttgt gctgcacaca aaggaagtat gtcatgcagc gatggttggt 540 ctcttcaccc ccgatgatga tgagatagca gcaatggctc aactcaatag ccacgctgct 600 tatgttgctc gggtgaagct ccattctgcg gttactgttg acccttggtg ggtcaagata 660 ttgaggagtg gagaacgcac tgctggctgg cagcagttgt ggtgggtgtt atggggagcc 720 cctgctcaac ggggcttcac ctaccacaaa taggggggcc tatcttacct cgagggtgtg 780 tgtacaaaag tttggagggg gacacaccct aacatgatcg aggtcagaag gaacgccctc 840 gtgagaccta ggagacttta ctaccagcaa gagattggca ctggattgca gtatcgtgtg 900 cacaacgcta gttatgccaa tctcagacgg ggtttgctgg aaagggtctt ctacgtggaa 960 gataaggtca acaaaaccct ggttccgtgt cccgaacccg accgcaatgc attcaaggaa 1020 ttggcatatt taaagcggcg gcttgtgcgt atcgttgggc tgcatacccg gatctccgct 1080 gcgcaagtgg tggattgtta tcagggcagg aagcgcaccg tgtatcacaa tgctcgctta 1140 tctcttgatg aaattcctct tgaycgtcgg gattcccatc ttcgcacttt yacgaaggcg 1200 gagaartttt gtgttgattt raaaccggac cctgcaccac gtgtcattca gccccgatct 1260 cctcgttata atttgcaagt tgctcgttac ctcaagaaga ctgagcacca catttacagg 1320 ggattggata agatttgggg gggtccgtgt gttatgaaag ggtataatgt cgaggaagtc 1380 gccagtcaca tcatcggtgc gtgggaacaa ttccagaagc ctgttgctat tggttttgac 1440 atgagcagat ttgaccaaca tgtttctgtg cccgcgctac aatttgagca ctctatctat 1500 caggcratat tcaaaggcga ccgtgagctc caacaattat tatcatggca gttgcgcaat 1560 tatggtactg gatttgccca tgacgggctt atccggtata aggttgacgg ctgtagaatg 1620 agcggcgata tgaacactgc cttaggaaat tgcatcttag cctgccttat caccaagcac 1680 atttgccgtg ggttagacgc gagacttatc aacaatggtg acgattgtgt tctcatatgc 1740 gaaactcgtg acgtggggcg tgtcgtggat aagttaacga cagcgtggct ccactttggt 1800 tttacatgta tcgcagagga accagtctat gaaccagaga agattaggtt ttgtcagatg 1860 gcccctgtat atgatggtga gaagtgggtg atggtgcgag atccgaaggt cagcctaagt 1920 aaggacgctt tttctatggt tcgttgggat acagtgaaga atgcacaaca atggtttaaa 1980 gctgtggggc agtgcggtct atctatagcc ggaggggtgc ctattgtgca ggagttctac 2040 aggatgtacg agcgcgcggg aggtcatgtc aaactcccag tgttgaaaga ggttagcgct 2100 agtgggttgt ttcatatgag tttcaattcc aaccgggcct attctgagat ttccgatgct 2160 gccagattta gcttttggaa agccttcgac atcttaccag atgttcagga ggccaccgaa 2220 gctgaactgc gtcgcacctg gattagtctc gattttggcc cggctggtga ccttaacaac 2280 cctatcctag aatggacgtt cctgtagaca ctgaactgat ggtgaaacca gccgggaaga 2340 gggggaaaac aaaagctaaa gtggacatag ccaaggatgc tgtgcggaaa caagcaccta 2400 gcactactaa tgggggtaat tgggttgttg ttgctgataa ggtggaggtt catattgcct 2460 tcaactttta gtttgccccc actggtaacg ctagaacaaa tcatcgtact tagcttttgt 2520 ggtctcttaa tttcctgcgc ttgtaaggca gatacaacgc tggtttggca ctattccgac 2580 aacaattcaa agaatcaaca catcacaatc tccacaccta atggacgcta agtatgggaa 2640 ggatccgcgc ctggctgctg ctgctgctac tggtgcagct tgggcagtgc gttttcttaa 2700 taggggttgg gcttcgctct ccccgaaaca gaagcgcacc gctcgatctg tgctggggtt 2760 gcagaatcag cctgatgtta tcgtgcctgt acgacctcgt gctactgctc gtgtcgccag 2820 gcccactagg cagggtcccg ggcttgcggg gaaatccatg acaattacca agtgcgaata 2880 cctttctgac attgtctctc acgtgggtac tattccacta accgaccatt gggtggtcaa 2940 tcctggcacc attaagactt ttccccagac tagcctcatg gcttcgcagt tcaacaagta 3000 taggttgact gccctgaggg tgcgctatac tagcacctgt agctttgaga cgtctgggcg 3060 tgtggcaatc gcgttcacta acgatagtaa tgatccactg cccaccacca agtcgcagct 3120 gtacaacttc cctgtacata tcgaggcagc tgcgaccgag tctaaggtgc tgaccatccc 3180 gtgcgataac gtttatcggt ttgtgaggga cgatggggta tccgatccta aactcgtgga 3240 tttcggaaga attgtagtgt gcacgtatgg atcgagcgct gcggacccag cgactctagg 3300 cgaactcttt attgagtaca cgatcgtctt ctctgatcca acctacactt cttctctcac 3360 acagcaaggt gagaatcagc gcagtattgg tccacgctac gccacagtag actacgagtc 3420 cacccgctgg gagtgtcaac tacaagcagc tggtcgatgg ttggtctgct gggtaagtga 3480 tagcgccatc ccttcccctt cgatcgtggg ggtaggagct aagggtaagg tgctaacgag 3540 ttctgactca aagtgcggga ttgcaaccgt tattgctcaa gctccgtact gttccattgt 3600 ttctactact gtatcggccc cgtcaagctt gacgtggttt gttgctcgac tgtgagggga 3660 cctacccact gtgctgccac acaggaactt ccaaccttcg ggtggcgagg tagggcagaa 3720 gagtgactga acgaggatgg tgtagagcaa tggatggggg gggagtccat ggtgggctcc 3780 ggcgcgacga tgctaaaatc tccatatcat gtgtggagtg ggctgcttag tcgcttatta 3840 gttgaaaatt aggggggtcc ttagggacct ctcccgccc 3879 //