ID U70866; SV 1; linear; genomic RNA; STD; VRL; 5995 BP. XX AC U70866; XX DT 06-JAN-1999 (Rel. 58, Created) DT 22-MAR-2001 (Rel. 67, Last updated, Version 3) XX DE Bean pod mottle virus complete segment RNA1 polyprotein gene, complete cds. XX KW . XX OS Bean pod mottle virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-5995 RX DOI; 10.1023/A:1008012502470. RX PUBMED; 10403699. RA Di R., Hu C.C., Ghabrial S.A.; RT "Complete nucleotide sequence of bean pod mottle virus RNA1: sequence RT comparisons and evolutionary relationships to other comoviruses"; RL Virus Genes 18(2):129-137(1999). XX RN [2] RP 1-5995 RA Ghabrial S.A., Di R.; RT ; RL Submitted (13-SEP-1996) to the INSDC. RL Plant Pathology, University of Kentucky, S-305 Agricultural Science Center RL North, Lexington, KY 40546, USA XX DR MD5; 484649af4ee8780b3bd0df38196fb735. DR EuropePMC; PMC2861173; 20229114. XX FH Key Location/Qualifiers FH FT source 1..5995 FT /organism="Bean pod mottle virus" FT /chromosome="RNA1" FT /strain="KY G-7" FT /mol_type="genomic RNA" FT /db_xref="taxon:12260" FT mat_peptide 368..1285 FT /product="protease co-factor" FT /note="34 K product of polyprotein precursor; cleavage site FT Q-F; similar to the 32K protein of cowpea mosaic virus" FT CDS 368..5920 FT /codon_start=1 FT /product="polyprotein" FT /note="210K polyprotein precursor that generates five FT mature proteins" FT /db_xref="GOA:Q9YJU5" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/Swiss-Prot:Q9YJU5" FT /protein_id="AAD09629.1" FT /translation="MKFYPGQNISEIVYHFQSNETANRLDAYFACGCEEDTEVLARLKQ FT CNPRLLHLSYAAFCLEMGSHSIEEMEYDDGELIFSYFQNFLLSIVSNSSKTTKLRAYIR FT SAFAYHFQHFVEFDQYTNDSLNTVDTSVSAQGIADLALSMVRWIPTQIKKVVNFGVGSV FT IESFSEHFNKLLMQYCPIVFQAFSWVNNIWTMVKEWIEEAAKEISWFLQGCKELHAWGM FT CILASSCALGLVEKCLISLGMISESFDLVGLFVRSAIVGAFCVSIKTGKFVTNSELITC FT ATIAVSTIATVMSQAFKPSEEIKGQFQALSVLEGLATQLTSFCDTSLVAMGKTCTAFNQ FT ICTAGKNVKVIAGRLLEVVSNFVRKLLGLDSAFLRDAALIFSQDVDGWLRNISWCQEQF FT LLKAYMSQDDLIVLRSLVVKGERMREQMLEGEVKVSPSVCNLIVKGCEEANKLMRESRL FT HCSKTIRKIPFVIFAHGESRVGKSLLVDRLITDFCDHLEIGEDAVYSRNPSDPFWSGYR FT RQPIVTIDDFAAVVSEPSAEAQLIPLVSSAPYPINMAGLEEKGMHFDSQIMMCSSNFLE FT PSPEAKIRDDMAFRNRRHVLITVELKPGVEYDESDFTKNQRYLLKTWFHYHYVVDQTFE FT SYADLLAHCFTKWERHVKEQESNLSQIKGKKSESGHFYNFQQLMDLAVSWNLNADIMKN FT RIKAERNDMVYVFSAGRKDKILHCFLNKEGECTVRPDSIDDPEAQALLKASETMLMKAY FT AFLKYNNATNLIVRTHLAELVNEDFYDEKFNFIGTIGTPAFHRQIAAHLEKMPLWQKAI FT LCGMGHCLSRKSKETWYTGMKEKFVQMMKSIYETEVTDWPVPLKIISGTILATILGTTF FT WKLFSFLRDAGNGGVFVGNVASAFTTSSVLEAQSRKPNRYEVSQYRYRNVPIKRRAWVE FT GQMSFDQSVVAIMSKCKASMRMGNTDAQILMVPGRRFIAHGHFFKNLTQKVRVQIVTSE FT KSYWHVYDPDKFQMFDNSEIGLYTNPTLEDIPHSAWDLFCWDSEKTLPNNFSAELLSCK FT LDTVTGQYYPRMAPINCRVHRQPIHITEGNYVRKQDVSIEYDACTIPNDCGSLVVAKVG FT NHKQIVGFHVAGSKGRLGYASLIPYVEPVVQAQSAEVYFDFFPVEVDSQEGVAHIGELK FT SGVYVPLPTKTNLVETPKEWQLDLPCDKIPSVLTTTDERLVGTEHEDMTHSWWYSKYAT FT PMMPLDEEILSKVAQDMVEEWFDCVDEEDTFEEVSLSAALNGVEGLDYMERIPLATSEG FT FPHVLSRKNGEKGKRRFVTGDGEEMSLIPGTSVEEAYNKLTVELEKCVPTLVGIECPKD FT EKLPRRKIFDKPKTRCFTILPMEFNLVVRQKFLNFVRFIMKKRDKLSCQVGINPYSMEW FT TGLANRLLSKGNDILCCDYASFSGLITKQVMSKMAEMINSLCGGDEKLMRERTHLLLAC FT CSRMAICKKDIWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSFR FT NFISLCVYGDDNLISVHEYVKPYFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSEC FT DFLKRNFKQMSNVLWVAPEDKASLWSQLHYVSCNNLEMQEAYLVNLVNVLRELYLHSPE FT EARRLRRKALSCIEWLQKADVPTIAQIEEFHSMQRIMNAPDSNDNIDLLLSIDLLGLQG FT AARPSQIRLWFDDKLVLANTQEFFDGNFPADSWLPIFVNCLYPVSQLPAEAVIVNVVCG FT SGRGGLPTTAWISSAVNNRSSDINKKIRTALGKGKKIVFLTRVDPFPVALLAVLFGVKN FT EILSSNATNPMLTRLLENCKSLKYLVDECPFAFVN" FT mat_peptide 1286..3079 FT /product="putative helicase" FT /note="68K product of polyprotein precursor; cleavage site FT Q-S; siimilar to the 58K protein of cowpea mosaic virus" FT mat_peptide 3080..3163 FT /product="VPg" FT /note="4K product of polyprotein precursor; cleavage site FT Q-M" FT mat_peptide 3164..3787 FT /product="protease" FT /note="24K product of polyprotein precursor; cleavage site FT Q-S; similar to the 24K protein of cowpea mosaic virus" FT mat_peptide 3788..5917 FT /product="putative RNA dependent RNA polymerase" FT /note="RdRp; 81K product of polyprotein precursor; similar FT to the 87K protein of cowpea mosaic virus" XX SQ Sequence 5995 BP; 1732 A; 970 C; 1320 G; 1973 T; 0 other; tattaaaatt ttcataagat ttgaaatttt gataaaccgc gatcataggt tgccgcacct 60 taaaaccgga aacaaaagca atcgttactt gatttcaaag acttctcaat ttctctctac 120 atttcttgta tacggctttc aaagtgaaag aaaatcactc tctgtgctgg tcgcagcatt 180 cgtgaatcat tttctttctg ctctcagttc attcgctgaa cactctccta tttgatatag 240 gacttcgtgt cagatttgaa cttctcttac ctctctttct cggttcttca tttgatttca 300 aatttctctg aaatttaaat ttcttttgac attttgaact ttgtgttggt tccatttgaa 360 aaacaacatg aagttctatc ctggtcagaa tatttctgaa attgtttacc actttcagag 420 taatgagaca gccaataggt tagatgcata ttttgcttgt ggctgtgagg aggatactga 480 agtcctcgct cgtttgaagc agtgtaatcc tcgtctgctt catctgtcat atgctgcctt 540 ttgtttggaa atgggcagtc attcaataga ggaaatggaa tatgatgatg gggaattaat 600 tttttcctat tttcaaaatt ttttgctttc catcgtttcc aattcttcta aaacaaccaa 660 attgagagca tacattcgtt cagcatttgc atatcatttt cagcattttg ttgaatttga 720 tcaatataca aatgattctc tcaatactgt agatacaagt gtatcagccc aagggatagc 780 agacttggct ctctctatgg ttagatggat acccactcag attaaaaaag ttgttaattt 840 tggtgtggga tctgttatag agtctttttc agagcatttt aataagctct tgatgcaata 900 ttgtccaata gtttttcaag ctttcagctg ggttaacaat atttggacaa tggtcaaaga 960 gtggatagaa gaagctgcga aagaaatttc atggtttttg caaggatgta aagagctgca 1020 tgcctgggga atgtgtattt tggctagctc ctgtgctcta ggattggttg aaaaatgcct 1080 tatttctttg ggcatgattt ccgaatcttt tgatttggtt ggcttgtttg tccgatctgc 1140 cattgtggga gctttctgtg tttccataaa aactggcaag ttcgtcacga atagtgaatt 1200 gatcacttgt gctaccattg cagtttctac aatagcaact gtaatgtctc aggcttttaa 1260 gccttctgaa gagattaagg gacagttcca agccctttca gttctagaag ggttggcaac 1320 acagctcact tcattttgtg acacgtcctt agttgctatg ggaaaaacct gcacagcttt 1380 taatcaaatt tgcactgctg gcaaaaatgt taaggtgatc gcaggtaggt tgctggaagt 1440 tgtttctaat tttgttagaa aattattagg attggatagt gcttttctca gagatgctgc 1500 actcattttt tctcaagatg tggatggatg gttgcgtaac attagttggt gccaagaaca 1560 gtttttgttg aaagcttaca tgtcgcaaga tgatcttatt gtcttacgct ctttagttgt 1620 caaaggtgaa agaatgaggg aacagatgct tgaaggagaa gttaaggtgt ctccaagtgt 1680 ttgcaacctt attgtcaaag gctgtgaaga agcaaataaa ttgatgcgtg agagccgact 1740 tcattgttca aaaacaatta ggaaaattcc ttttgttatt tttgctcacg gtgaatcccg 1800 agttgggaaa tctctgctgg ttgataggct aatcacagat ttctgtgatc atttggaaat 1860 tggagaagat gctgtgtact caaggaatcc atcagatcct ttttggagtg gatatagaag 1920 gcagccaatt gttactattg atgattttgc tgctgttgtt tcggagccat ctgctgaagc 1980 tcaattaatt ccattagttt caagtgctcc ttatccaata aacatggctg gtttggagga 2040 aaagggaatg cactttgatt cccagatcat gatgtgttct tcgaatttct tagagccgtc 2100 tcctgaagct aaaattagag atgatatggc ttttagaaat cgaagacatg tgctgatcac 2160 agttgaactc aaacctgggg ttgaatatga tgagagtgat tttactaaaa atcagcgata 2220 tttgctgaaa acttggtttc attatcatta tgttgtagac caaacttttg agtcttatgc 2280 tgatctgctg gcacattgtt ttaccaagtg ggagagacat gttaaggagc aagagtcaaa 2340 tctgtctcaa attaagggca agaaaagtga aagtggtcat ttctataact ttcaacaact 2400 tatggatttg gctgtttcat ggaatcttaa tgcagatatc atgaaaaaca ggatcaaggc 2460 tgagagaaat gacatggttt atgttttttc tgcagggagg aaggataaaa ttttgcattg 2520 ttttttgaac aaggaaggcg agtgcacggt tcgtcctgat tcaatagatg atcctgaagc 2580 gcaagctttg ctcaaagctt cagagacaat gctcatgaaa gcctatgcct tcctcaaata 2640 caataatgca acaaatttga ttgtcaggac ccatttggca gaactggtga atgaagattt 2700 ttatgatgaa aaattcaatt tcattggaac aattggaaca ccggcttttc atcgccaaat 2760 agctgcacat ttggaaaaga tgccattgtg gcaaaaagca attttgtgtg gaatgggaca 2820 ttgtttgtct cggaaaagca aagaaacctg gtatactggt atgaaggaga aatttgtgca 2880 gatgatgaaa agcatttatg aaactgaagt cacagattgg ccagtgccat tgaaaatcat 2940 ttctggtact attctagcca ccattttggg aacaactttt tggaagttat tttccttttt 3000 aagggatgct ggtaatggag gtgtttttgt tggtaatgtt gcttcagcat ttactacatc 3060 aagtgtgctc gaggcgcaaa gccgaaaacc caacagatat gaggtctctc aatataggta 3120 tcgcaatgtg ccaataaagc gcagagcgtg ggttgagggc caaatgtctt ttgatcaatc 3180 agtggtagca attatgtcaa aatgtaaagc cagtatgaga atgggaaaca ctgatgctca 3240 gattttgatg gttccagggc gtagattcat tgcacatggt cattttttca agaatctcac 3300 ccaaaaagtt agagtccaaa ttgttacttc tgagaaaagc tattggcatg tgtatgatcc 3360 tgataaattt caaatgtttg ataacagtga aattgggttg tatacaaatc caactttgga 3420 ggacatccca cattctgctt gggacctttt ctgctgggac agtgagaaaa ctttgccaaa 3480 caatttttct gctgaattgc tttcctgtaa attggacact gttacgggac aatattatcc 3540 cagaatggct ccaataaatt gtcgagtaca tcggcaacca attcacataa ctgaagggaa 3600 ttatgttagg aaacaagatg taagcattga atatgatgcc tgcacaattc ccaatgattg 3660 tggatctctg gtggttgcta aggttggaaa tcacaagcaa attgttggtt tccatgttgc 3720 tggaagcaaa ggaagattgg gctatgcttc attaatacca tatgttgagc ctgtggtaca 3780 agcccaaagt gctgaagtct attttgattt ctttcctgtg gaagttgata gtcaagaggg 3840 agtagctcat attggtgaac tcaaatctgg agtttatgta ccactgccca caaaaactaa 3900 tcttgtggaa actcccaaag aatggcagtt ggatttgcct tgtgataaga ttccaagtgt 3960 gttaaccact actgatgaga gattggttgg cacagagcat gaagatatga cccattcttg 4020 gtggtattca aaatatgcaa ctcccatgat gcctcttgat gaggagattc tttccaaagt 4080 tgcacaagac atggttgaag agtggtttga ttgtgttgat gaggaggata catttgaaga 4140 agtttctttg agtgctgcac tcaatggtgt tgaaggtttg gattacatgg aacgcattcc 4200 tcttgccact tcagagggtt ttcctcatgt tctgtccagg aaaaatggtg aaaaaggcaa 4260 gagaagattt gtcactggag atggtgaaga aatgtcacta attcctggta ccagtgttga 4320 agaagcgtac aataaattga ctgttgaatt agaaaagtgt gttccaacat tggttggtat 4380 agaatgtcct aaagatgaaa aacttcctcg tcgcaaaatt tttgataaac ccaagacgcg 4440 ctgcttcacc atacttccta tggaatttaa tttagtggtg cgtcaaaagt tcttgaattt 4500 tgtgcgattc attatgaaga aaagggacaa attgagttgc caagttggaa tcaatccata 4560 ttccatggag tggactggtt tggcaaatag actgttgagc aagggaaatg acattttgtg 4620 ttgtgactat gctagtttta gtggtctgat aactaagcaa gtcatgagca agatggcaga 4680 aatgataaac agtctttgtg gtggagatga gaaactgatg cgtgagagaa ctcatcttct 4740 gttagcttgt tgctccagga tggcaatctg taaaaaagat atttggagag ttgagtgtgg 4800 tatcccctct ggatttccac tcactgttat ctgcaatagc attttcaatg agatgcttat 4860 cagatatagt tatgaaaagt tgttgcgtca agctaaggct cctagtatgt ttctccagtc 4920 ttttagaaat tttatttctt tgtgtgttta tggagatgat aatttaatta gtgttcatga 4980 gtatgtcaag ccatatttta gtggttctaa attgaaaagt ttcctagcta gtcataacat 5040 caccatcact gatggaattg acaaaactag tgcaacttta cagtttagaa agttgtctga 5100 gtgtgatttt cttaaaagaa attttaagca aatgtccaat gttttgtggg tagctcctga 5160 agacaaagct agtttgtggt cacaattgca ctatgtttca tgtaacaatt tggaaatgca 5220 agaagcttat cttgttaact tggttaatgt gttgcgtgag ttgtacctgc atagtccaga 5280 agaagctcgt cgattgagaa gaaaggctct ctcttgtatt gagtggttgc aaaaagctga 5340 tgtgcccacc atagcacaaa ttgaagaatt tcattcaatg cagaggatta tgaatgctcc 5400 tgattcaaat gataatattg atcttttgtt gagcattgac ttgttgggtc ttcagggtgc 5460 agcaaggcct tcccaaataa gattgtggtt tgatgataaa ttggtattgg caaatacaca 5520 agaatttttt gatggaaatt ttccagcaga ttcttggtta ccaatatttg ttaattgtct 5580 ttaccctgtg agtcaattgc ccgcagaagc tgtcattgtt aatgttgttt gtgggagtgg 5640 gcgtggtggt ttgcctacta ctgcttggat tagttctgca gttaacaatc gctcctcaga 5700 tatcaataag aaaattcgga cagcgcttgg aaaaggtaag aaaattgtct ttttgactag 5760 agttgatcct tttcctgtgg ccttgttagc tgttctcttt ggtgttaaga acgaaattct 5820 gagttctaat gccacaaatc caatgttgac aaggcttctt gagaactgca agagtcttaa 5880 atatttggtt gatgagtgtc cttttgcatt tgttaactag tttgtaatat tttgttcact 5940 taaataaagc gcattactat gtgcaataag tgtgtctaaa tataaaaaaa aaaaa 5995 //