ID U68408; SV 1; linear; genomic DNA; STD; PLN; 8987 BP. XX AC U68408; XX DT 05-NOV-1996 (Rel. 49, Created) DT 14-FEB-2020 (Rel. 143, Last updated, Version 4) XX DE Zea mays retrotransposon Opie-2 5' LTR, primer binding site, gag gene, pol DE gene, complete cds, polypurine tract and 3' LTR. XX KW . XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; OC Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea. XX RN [1] RP 1-8987 RX DOI; 10.1126/science.274.5288.765. RX PUBMED; 8864112. RA SanMiguel P.J., Tiknonov A., Jin Y.-K., Motchoulskaia N., Zakharov D., RA Melake-Berhan A., Springer P.S., Edwards K.J., Lee M., Avramova Z., RA Bennetzen J.L.; RT "Nested retrotransposons in the intergenic regions of the maize genome"; RL Science, e1252229 274(5288):765-768(1996). XX RN [2] RP 1-8987 RA SanMiguel P.J., Tiknonov A., Jin Y.-K., Motchoulskaia N., Zakharov D., RA Melake-Berhan A., Springer P.S., Edwards K.J., Lee M., Avramova Z., RA Bennetzen J.L.; RT ; RL Submitted (29-AUG-1996) to the INSDC. RL Biological Sciences, Purdue University, 339 Hansen LSRB, West Lafayette, IN RL 47907, USA XX DR MD5; 795818fd345ccf49e30b34d6757ebda3. XX FH Key Location/Qualifiers FH FT source 1..8987 FT /organism="Zea mays" FT /cultivar="LH82" FT /mol_type="genomic DNA" FT /note="contains ICTV exemplar Zea mays Opie2 virus" FT /db_xref="taxon:4577" FT mobile_element 1..8987 FT /mobile_element_type="transposon:retrotransposon Opie-2" FT /note="immediately flanked by a target site duplication of FT host DNA, 'GGACC'" FT repeat_region 1..1271 FT /rpt_type=LONG_TERMINAL_REPEAT FT /note="5' LTR" FT primer_bind 1274..1287 FT /note="similar to the reverse-complement of the 3' end of FT wheat initiator methionine tRNA" FT /inference="non-experimental evidence, no additional FT details recorded" FT gene 1322..3131 FT /gene="gag" FT CDS 1322..3130 FT /codon_start=1 FT /gene="gag" FT /product="Gag" FT /note="in-frame stop codon; possibly a post-transposition FT mutation" FT /db_xref="GOA:O24586" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/TrEMBL:O24586" FT /protein_id="AAC49501.1" FT /translation="MDPKGKGIVINDKEKESFVNEPRDDKSNNSGSGHKRKDGKKKKTR FT RIKEIVYYDSDESSSSQKDDDNDYRKTVNSNFSFDYSRIPHSSNSHLLSIPLGKPPHFD FT GEDYGFWSHKMRSHLFSLHPSIWEIVENGMKFDSSDSPMLINEQIHRNAQATTVLLASL FT CREEYNKVSGLDNAKQIWDTLRISHEGNDITMLTKMELVEGELGRFAMIRGEEPTQTYN FT RLKTLINKIRSYGSTRWTDHDVVRLMLRSFTVLDPHLVNNIRENPRYTMMTPEEVLGKF FT VSGRMMIKEARYVDDALNGPLHEPQPIALKATRNKESLPSKVAQVEAAGLNDEEMALII FT KRFKTVLKGHKGQPSKNKTKGKRSCFKCGKIGHFIANCPDNDSDQEQGNKREKKKNYKK FT AKARRILGKEWDSDCSSSDSDNEGLAATAFNKSALFPNEHHTCLMAREKKVVITRNTNT FT YDSSSDDESSEDEIDYSSLFKGLDRTKIAKINELIDALNEKDRILEKQEDLLYEEHDKF FT VSTQNSLALEVKEWILSCELSTCNETISYLKGEINVLTAKLEVASNSCVENITICTRCK FT DFDVNACSEHLVSISKLNDEVASLNA" FT gene 3659..6902 FT /gene="pol" FT CDS 3696..6902 FT /codon_start=1 FT /gene="pol" FT /product="Pol" FT /note="5' end not determined experimentally" FT /db_xref="GOA:O24587" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR013103" FT /db_xref="InterPro:IPR025724" FT /db_xref="InterPro:IPR036397" FT /db_xref="InterPro:IPR039537" FT /db_xref="UniProtKB/TrEMBL:O24587" FT /protein_id="AAC49502.1" FT /translation="MQVYASGGSSWIIDSGCTNHMTGEKKMFTSYVKNKDSQDSIIFGD FT GNQGKVKGLGKIAISNEHSISNVFLVESLGYNLLSVSQLCNMGYNCLFTNIDVSVFRRC FT DGSLAFKGVLDGKLYLVDFAKEEAGLDACLIAKTSMGWLWHRRLAHVGMKNLHKLLKGE FT HVIGLTNVQFEKDRPCAACQAGKQVGGSHHTKNVMTTSRPLEMLHMDLFGPVAYLSIGG FT SKYGLVIVDDFSRFTWVFFLQEKSETQGTLKRFLRRAQNEFELKVKKIRSDNGSEFKNL FT QVEEFLEEEGIKHEFSAPYTPQQNGVVERKNRTLIDMARTMLGEFKTPECFWTEAVNTA FT CHAINRVYLHRILKNTSYELLTGNKPNVSYFRVFGSKCYILVKKGRNSKFAPKAVEGFL FT LGYDSNTKAYRVFNKSSGLVEVSGDVVFDETNGSPREQVVDCDDVDEEDIPTAAIRTMA FT IGEVRPQEQDEREQPSPSTMVHPPTQDDEQVHQQEVCDQGGAQDDHVLEEEAQPAPPTQ FT VRAMIQRDHPVDQILGDISKGVTTRSRLVNFCEHNSFVSSIEPFRVEEALLDPDWVLAM FT QEELNNFKRNEVWTLVPRPKQNVVGTKWVFRNKQDERGVVTRNKARLVAKGYAQVAGLD FT FEETFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERY FT PDHVCKLSKALYGLKQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFVCQIYV FT DDIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLL FT KRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMC FT ARFQSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTS FT GTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPL FT LCDNESAIRMAENPVEHSRTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLD FT EKTFCRLRSELNVLDSRNLD" FT misc_feature 7682..7693 FT /note="polypurine tract" FT repeat_region 7696..8987 FT /rpt_type=LONG_TERMINAL_REPEAT FT /note="3' LTR" XX SQ Sequence 8987 BP; 2497 A; 1850 C; 2293 G; 2347 T; 0 other; tgaaagggaa atgtgccttt gggccatttc taagtatttt ggtgattgag tgcaaacaca 60 agtgcttaaa tgtgaaaatg tgcccgtggt tgaacaaagt gcaaatcaaa attaaaggta 120 tgtttctaag ccttagtaca ttggttttgt gtactaatac cttgtctaag tgttagaaac 180 aggaagaaga ataaaagaaa agaagtggag agtggctgtg tacagccaaa ggctgtttcg 240 ggctggggca ccggactgtc cggtgtgcac cggacagtgt ccggtgcgcc agaccagcgc 300 ggagcaaacc agccgctctc gggtttttct ccggcgactt cggctaaaat tcaccggact 360 gtccggtgtg caccggactg tccggtgagc caacggtcgg ctgggccaac ggtcggccgc 420 gcgattggcg cgcgacacgt ggccgagcca acggtcggaa aggtacaccg gactgtccgg 480 tgtgcaccgg acatgtccgg tgcgccaact gtgcgcagat ctgcatcaga aagcaacggt 540 cggatgagct ttttatggaa acaaatcggg caccggacag tgtccggtgt gcaccggact 600 gtccggtgcg ccacgagact gaaggcaaag atggccttcc agatttgttc ccaacggctc 660 ctagctgcct tggggctata aaagggaccc cttggcgcat ggaggagtac cccaaagcat 720 tcctacaaca cttctaagca ccaagacgtc aatctcacgc gttcgtttca ttgtgatagc 780 atatagagct cttgtggagt ttttgagttg tgttgcgagc tctttgtgcg acttgtgtgc 840 gtgttgttgc tctgatcttt tgaagtcttg tgtgcgttgc tcattccctc cttactccgt 900 gattctttgt gaacatcaaa gtgtaagggc gagaggctcc aagttgtgga gattcctcgc 960 aaacgggata agaaaagaaa agcataacac tgtggtattc aagttgatca ttggatcact 1020 tgagaggagt tgagtgcaac tctcgtccgt tgggacgcca caacgtggag taggcaagtt 1080 tttgtacttg gccgaaccac gggataaacc actgcgtctt ctctgtgttt gatcttctgt 1140 ggttatcgta ttgtgcaagg ccttcactct agccacttgg cattaactgt gctaactctt 1200 aatcaagttt tgtggctata agtttaagtt ttacaggatc acctattcac ccccccctct 1260 aggtgctctc aattggtatc ggagccgttc tcttcaagaa agggactaac cgcccgaaga 1320 gatggatcct aaggggaagg gaattgtgat caacgacaag gagaaggagt ccttcgtcaa 1380 tgagccaagg gatgacaagt ccaacaactc gggctcgggc cacaagcgaa aagatgggaa 1440 gaagaagaag acaagacgca tcaaggagat cgtctactac gacagcgatg agtcctcttc 1500 ttcccaaaag gacgacgaca acgactacag gaagacggtc aattcgaact tctcatttga 1560 ttattcgcgt attccacata gttcgaattc gcatttgctt tccattcctc ttggcaaacc 1620 tccacacttt gatggggagg actacggatt ttggagtcac aaaatgcgta gtcacttatt 1680 ctctctccat ccaagcatat gggagatagt agagaatgga atgaaatttg atagctcgga 1740 tagccctatg cttataaatg aacaaattca tagaaatgca caagctacta ctgttctctt 1800 agcatctttg tgcagggaag agtacaataa ggtgagcggc ttggacaatg ccaagcagat 1860 atgggacacc ctcagaatct ctcacgaggg gaacgacatc accatgctca ccaagatgga 1920 gttggtggag ggcgagcttg gacgattcgc catgataagg ggagaagagc caactcaaac 1980 ttacaaccgg ctcaagaccc ttatcaacaa aataaggagc tacggaagca cgcgttggac 2040 ggatcacgac gtcgtccgcc taatgctcag gtcctttacc gttcttgatc ctcatctcgt 2100 gaacaatatt cgtgagaatc ccaggtacac gatgatgacg cccgaggaag tacttggaaa 2160 attcgtgagc gggcggatga tgatcaagga ggcaagatac gtcgacgacg cgttgaacgg 2220 tccactccac gagcctcaac ccattgctct aaaggcaaca aggaacaagg agtcgctacc 2280 tagcaaggtg gcgcaagttg aggcggccgg gctcaatgat gaagagatgg ctctcatcat 2340 caagagattc aagacggtgc tgaagggtca caaggggcag ccaagcaaga acaagacaaa 2400 ggggaaacgc tcatgcttca agtgcggtaa gattggtcat tttatcgcta actgccccga 2460 taacgatagt gaccaggaac agggaaacaa gagggaaaag aagaagaatt acaagaaggc 2520 caaggcgagg cgcattctag gcaaggagtg ggattcggat tgctcctcct ccgactccga 2580 caatgaggga ctcgccgcca ctgccttcaa caaatcggcc ctcttcccca acgagcatca 2640 cacttgcctc atggcaaggg aaaagaaggt agtaatcact cgtaatacta atacttatga 2700 ttcttctagt gatgatgaat ctagtgagga tgaaattgat tactctagtt tattcaaggg 2760 attggacaga actaagatag ctaagattaa tgagttgatt gatgccttaa atgaaaagga 2820 tagaatctta gagaaacagg aagacctttt atatgaagaa catgataaat ttgttagtac 2880 acaaaattca cttgctctag aagttaaaga atggatactt tcttgtgaac tttctacttg 2940 taatgaaacc atttcttatt taaaaggtga aattaatgtt ttaactgcta aactagaagt 3000 agcaagtaac tcttgtgttg aaaatattac aatttgcact aggtgtaagg attttgatgt 3060 taatgcttgt agtgaacact tagtttcaat ttcaaaacta aatgatgaag tggctagtct 3120 taatgcttaa cttaagacta gcaaaagtga ttttgaaaaa ctaaaatttg ctagggatgc 3180 ctacacggtt ggtagacacc cctcaattaa ggatgggctt ggcttcaaga gggaagccaa 3240 gaacttaaca agccataagg ctcccattcc cgccaaggag aaagggaagg cccctatggc 3300 tagtagtgca aaaaggaacc atgcctttat gtatcatgat aggagacatg ctagaaatgc 3360 ttgtaatgat tttgattcat atgtttatga ttctcatgcc atgtttgctc ctagttcttc 3420 atatgtgtat gatagaaatg ttactaggag aaatgttgtt cctaaaaaga atgttattca 3480 tgctcctagg aaagtagcaa atgaaccttc taccatttat tatacttgca atgctccctt 3540 tgctatttgt agaaaggaca agaaggtaat tgctaggaag ttaggggcaa gatgcaaggg 3600 agataaaact tgcatttggg tccctaagaa tatatgtgct aaccttgtag gacccaacat 3660 gagttgggta cctaagaccc aagcctaaat ttgccttgca ggtttatgca tccgggggtt 3720 caagctggat tatcgacagc ggatgcacaa accatatgac gggggagaag aagatgttca 3780 cctcctacgt caagaataaa gattcccaag attcaattat attcggtgat gggaatcaag 3840 gcaaggtaaa aggtttaggt aaaattgcaa tttcaaatga gcactctatt tctaatgtgt 3900 ttttagtaga gtctcttgga tataacttgc tatctgttag tcaattatgc aatatggggt 3960 ataactgtct attcacaaat atagatgtgt ctgtctttag aaggtgtgat ggttcactag 4020 catttaaggg tgtattagac ggcaaacttt acttagttga ttttgcaaaa gaggaggccg 4080 gtctagatgc atgcttaatt gctaagacta gcatgggctg gctgtggcat cgccgcttag 4140 cacatgtggg gatgaagaac cttcacaagc ttctaaaggg agaacatgta ataggtctaa 4200 ctaatgttca attcgaaaaa gatagacctt gtgcagcttg tcaagcaggg aaacaagtgg 4260 gaggctctca tcacaccaaa aatgtgatga cgacatcaag acccttggag atgctgcata 4320 tggacctctt cggacccgtc gcctatctga gcataggagg aagtaagtat ggtctagtta 4380 ttgtagatga tttttcccgc ttcacttggg tgttcttttt gcaggaaaaa tccgaaaccc 4440 aagggaccct caaacgcttc ctcaggagag ctcaaaatga gtttgagctc aaagtgaaga 4500 agataaggag cgacaacggg tccgagttca agaaccttca agtggaggag ttccttgaag 4560 aggaagggat caagcacgag ttctccgctc cctacacacc acagcaaaat ggtgtggtag 4620 agaggaagaa caggacgctc atcgacatgg cgaggacgat gctaggagag ttcaagaccc 4680 ctgagtgctt ttggacggaa gccgtgaaca cggcttgcca cgccatcaac agggtctacc 4740 ttcatcgcat cctcaagaat acgtcgtatg agctactaac cggtaacaaa cccaatgtat 4800 cgtactttcg tgtatttggg agtaagtgct acattctagt aaagaagggt agaaattcta 4860 agtttgctcc caaagctgta gaagggtttt tattaggtta tgactcaaat acaaaggcgt 4920 atagagtctt caacaaatca tcgggtttgg ttgaagtctc tggcgacgtt gtatttgatg 4980 agactaatgg ctctccaaga gagcaagtgg ttgattgtga tgatgtagat gaagaagaca 5040 ttccaacggc cgcaatacgc accatggcaa ttggagaagt gcggccacag gaacaagatg 5100 aacgagaaca accttctccc tcaactatgg tgcatccccc aactcaagac gatgaacagg 5160 ttcatcaaca ggaggtgtgt gatcaagggg gagcacaaga tgatcatgtg ttggaggaag 5220 aagcgcaacc ggcacctcca acccaagttc gtgcgatgat tcaaagagat catcccgtcg 5280 accaaatttt gggtgacatc agcaagggag taactactcg atctcgatta gttaattttt 5340 gtgagcataa ctcctttgtc tcttctattg agcctttcag ggtagaagag gccttgctag 5400 atccggactg ggtgttggcc atgcaagagg agctcaacaa cttcaagagg aatgaagttt 5460 ggacactggt gcctcgtccc aagcagaatg ttgtgggaac caagtgggtg ttccgcaaca 5520 aacaggacga gcgcggggtg gtaacgagaa acaaggctcg acttgtggca aaaggttatg 5580 cccaagtcgc aggtttggat ttcgaggaga cttttgctcc tgtggctagg ctagaatcaa 5640 ttcgtatctt gctagcatat gccgctcacc attctttcag gttgtaccaa atggatgtga 5700 agagcgcttt cctcaacggg cctataaagg aggaggtgta cgtagagcaa ccccctggct 5760 tcgaggatga acggtacccc gaccacgtgt gtaagctctc taaggcgctc tatggactta 5820 agcaagcccc aagagcatgg tatgaatgcc ttagagattt cttaattgct aatgcgttca 5880 aggttgggaa agccgatcca actcttttca ctaagacatg tgatggtgat ttgtttgtgt 5940 gccaaattta tgtcgatgac ataatatttg gttctactaa tcaaaagtct tgtgaagagt 6000 ttagcagggt gatgacgcag aaattcgaga tgtcgatgat gggcgagttg aactacttcc 6060 ttgggttcca agtgaagcaa ctcaaggacg gcactttcat ctcccaaacg aagtatacgc 6120 aagatctgct aaagcggttt gggatgaagg acgccaagcc cgcaaagact ccgatgggaa 6180 ccgacggaca caccgacctc aacaaaggag gtaagtccgt tgatcaaaaa gcataccggt 6240 caatgatagg gtctttactt tatttatgtg ctagtagacc ggatattatg cttagcgtat 6300 gcatgtgtgc tagatttcaa tccgatccta aggagtgtca cttagtggcg gtgaagcgga 6360 ttcttagata tttggttgct acgccttgct tcgggctctg gtatccaaag gggtctacct 6420 ttgacttggt tggatactca gactccgact atgctggatg taaggtcgat aggaagagta 6480 catcggggac gtgccaattc ttaggaaggt ccctggtgtc gtggaactct aagaaacaaa 6540 cttctgttgc cctatccacc gctgaggccg agtatgttgc cgcaggacag tgttgcgcgc 6600 aactactttg gatgaggcaa accctcaggg actttggcta caatctgagc aaagtcccac 6660 tcctatgtga taatgagagt gctatccgta tggcggaaaa tcctgttgag cacagccgca 6720 caaagcacat agacatccgg catcactttt tgagagacca ccagcaaaag ggagatatcg 6780 aagtgtttca tgttagcacc gagaaccagc tagccgatat ctttaccaag cctctagatg 6840 agaagacctt ttgcaggctg cgtagtgagc taaatgtctt agattcgcgg aacttggatt 6900 gaattatagc atacatgtgt ttatgacttt tgatcatgtt cattctgcat tttgttgctt 6960 attgtggtgc tcaagttgta cacacactcc ctggacctca caagtccgtt gcaaagtgat 7020 gcacatgttt agggggagtt gtgttacaac ttgacccttt gagactaacc atatgcttga 7080 gtttgcttga tttagtctcg aaggagaatt gaaagggaaa agggtggact tggatcatga 7140 aagacttcca ctgcactccg atgagagggt aacttattcc aagttcatct catgaactcc 7200 tattgccatt tgctcttaat tgaagatttt ggtgaggcaa tggggttata gggccaaagt 7260 tgatcccgtt ttggtgcttg atgccaaagg gggagaaaat aaaggccaaa ggaataaatg 7320 gatcagctac cacttgcgct tgagggattt gaaaatagta gagtagagct tttggtttgt 7380 caaaactctt tcattatctc ttttgtcaaa agttagcttc ttgtggggag aagtgttgat 7440 tatggaaaaa gggggagttt ttgaaatctt tgattaatct cttttgaaat gactctcttt 7500 atgcttcaac atgtgtgttt gactttgaga tagagatttg agtttgattt acaaaaacaa 7560 accaagtggt ggcaaaggat gatccatata tgccaaaatc gaatcaaaat gaatttagtt 7620 tttatttgaa gtgattttgc acttgttcta gttgctttat gttgtgttgg cataaatcac 7680 caaaaagggg gagattgaaa gggaaatgtg cctttgggcc atttctaagt attttggtga 7740 ttgagtgcaa acacaagtgc ttaaatgtga aaatgtgccc gtggttgaac aaagtgcaaa 7800 tcaaaattaa aggtatcttt ctaagcctta gtacattggt tttgtgtact aataccttgt 7860 ctaagtgtta gaaacaggaa gaagaagaaa agaaaagaag tggagagtgg ctgtgtacag 7920 ccaaaggctg tttcgggctg gggcaccgga ctgtccggtg tgcaccggac agtgtccggt 7980 gcgccagacc agcgcggagc aaaccagccg ctctcgggtt tttctccggc gacttcggct 8040 aaaattcacc ggactgtccg gtgtgcaccg gactgtccgg tgagccaacg gtcggctggg 8100 ccaacggtcg gccgcgcgat tggcgcgcga cacgtggccg agccaacggt cggaaaggta 8160 caccggactg tccggtgtgc accggacatg tccggtgcgc caactgtgcg cagatctgca 8220 tcagaaagca acggtcggat gagcttttta tggaaacaaa tcgggcaccg gacagtgtcc 8280 ggtgtgcacc ggacagtgtc cggtgtgcac cggactgtcc ggtgcgccac gagactgaag 8340 gcaaagatgg ccttccagat ttgttcccaa cggctcctag ctgccttggg gctataaaag 8400 ggaccccttg gcgcatggag gagtacccca aagcattcct acaacacttc taagcaccaa 8460 gacgtcaatc tcacgcgttc gtttcattgt gatagcatat agagctcttg tggagttttt 8520 gagttgtgtt gcgagctctt tgtgcgactt gtgtgcgtgt tgttgctctg atcttttgaa 8580 gtcttgtgtg cgttgctcat tccctcctta ctccgtgatt ctttgtgaac atcaaagtgt 8640 aagggcgaga ggctccaagt tgtggagatt cctcgcaaac gggataagaa aagaaaagca 8700 taacactgtg gtattcaagt tgatcattgg atcacttgag aggagttgag tgcaactctc 8760 gtccgttggg acgccacaac gtggagtagg caagtttttg tacttggccg aaccacggga 8820 taaaccactg tgtcttctct gtgtttgatc ttctgtggtt atcgtattgt gcaaggcctt 8880 cactctagcc acttggcatt aactgtgcta actcttaatc aagttttgtg gctataagtt 8940 taagttttac aggatcacct attcaccccc ccctctaggt gctctca 8987 //