ID U62963; SV 1; linear; genomic RNA; STD; VRL; 6227 BP. XX AC U62963; XX DT 24-MAY-1997 (Rel. 52, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 2) XX DE Cymbidium mosaic virus, complete genome. XX KW . XX OS Cymbidium mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6227 RX DOI; 10.1007/s007050050084. RX PUBMED; 9125051. RA Wong S.M., Mahtani P.H., Lee K.C., Yu H.H., Tan Y., Neo K.K., Chan Y., RA Wu M., Chng C.G.; RT "Cymbidium mosaic potexvirus RNA: complete nucleotide sequence and RT phylogenetic analysis"; RL Arch. Virol. 142(2):383-391(1997). XX RN [2] RP 1-6227 RA Wong S.M., Mahtani P.H., Lee K.C., Yu H.H., Chng C.G.; RT ; RL Submitted (05-JUL-1996) to the INSDC. RL School of Biological Sciences, The National University of Singapore, Lower RL Kent Ridge Road, Singapore, Singapore 119260, Singapore XX DR MD5; 8c9c204ac0bea3a0341538ec07175350. XX FH Key Location/Qualifiers FH FT source 1..6227 FT /organism="Cymbidium mosaic virus" FT /isolate="Singapore" FT /mol_type="genomic RNA" FT /db_xref="taxon:12178" FT CDS 73..4326 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA dependent RNA polymerase" FT /db_xref="GOA:O10688" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O10688" FT /protein_id="AAB57879.1" FT /translation="MARVRDTLDRLRDPSVLTSINEEAHRHIRPVLASALVNCPYALTE FT EEADCLENLGVTVNPFAIQTHTHAAAKTVENRMLEIVGTHLPKEPSTFIFLKRSKLRYL FT RRAANNKDIFRNQHIEPKDLLRYDDESCEVMPECSTSTAYISDALHFLSYAQLGKIFQN FT SPKLKILLATLVLPVEALHRHPSLYPAIYTLNYHKDGFEYIPGNHAGGAYFHEYSTLQW FT LTLGKLIINDPLKVKKPLTLTVQLIESLGANHLLLITRGDLRTPKLRTFAKDTHVLLPQ FT IFHPKGMNANKPLSKRRAMQLWLYAKSVKEVSERDLYAKVRQLIPTSELDLFDPVEVTH FT LVNYLLFISHLSSVSSYDDILSSNIFQHFTIPIKNKIRELVQLFTGADQFNQLLKALDW FT QTFSYSMPVETIHTRAANYQVAKTVRMCRDLPCDEYDRVKDVLRQLPDGVTLFEENDKQ FT DPSSSEAEDSEDDTDSVDFNLPPTHDLPPNFDPLDKGKSIIVDTDNPSTSTAPAVTFAA FT GINSSASTNISFGSFTPEAEATPPPPMEKLPWDLWIPLLEQHGFKGKSKLYKPTGELIC FT PITEIKTVPHCPFPDKVPDGCVLALKSIKRFATKMTMLSSRASAYTSDIKNSRTGKLLP FT AMNMPWKASLAYVTQHGDREIPGVVIHGAGGCGKSYAIQKWLRSCSDPCAATVVCPTLG FT RRNDWLNKIGSYEQTNIKTFEKALIQPVNDVVIFDDYTKLPPGYIETMVYHHHNLDLII FT LTGDPMQSAYHETNRDAYISLIPDASASFSEYCEFNINATHRNVAELACLLGVYSERQG FT KLAVSFSTAPLSKGKVPILVPSRMKQEAFADVGNRCMTYAGCQGLTAPKIQILIDNHTA FT FCSEQTLYTCLSRAVDQIHFINTGPNSQAFWTKLESTPYLKAFLDNYREEQTERLTSTA FT PEREVREPAPPKTHIPVENTSGLRISALDLPEKHSREIFNKAHGFSNAIQGEGVAPMFQ FT HQQAKDETLFKATIDARLSITHPDENKREFAMKKDTGDVLFVNYKAIMNLPHEPVPFEP FT RLWNICKAEVQNTYLAKPIANLINGTLRQSPDFPANKIALFLKSQWVKKIEKIGAIPVK FT PGQTIASFMQETVMLYGTMARYLRKMRQRYQPAHIFINCEKTPEDFNKFVLEHWSHKQV FT AHTNDFTAFDQSQDAAMLQFEVIKARYFNIPEDVIEGYIQIKLTAEIFLGTLSIMRLSG FT EGPTFDANTECSIAYNATRYHINEDVTQVYAGDDMAMDHVCPEKKSFKALEKKLKLTSK FT PLYPKQKPGDWADFCGWTITPYGIIENPKKLDACLQLHTQLGDADKVARSYALDAKYAY FT DLGDRIHEILNADEMTSHFNVIRQLHKLHQQDVLVPPETTVATAVKSQPDMEDLWLRAL FT SFPDWTDRAQLLKRG" FT CDS 4333..5022 FT /codon_start=1 FT /note="triple gene block 1" FT /db_xref="GOA:O10689" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O10689" FT /protein_id="AAB57880.1" FT /translation="MELAYLVRLLEHNKFERTNLPLSSPLVVHGIAGSGKSTILTTFHH FT HYPAYPIFSHSPTLLDPSNRIYQQCITTDWVPGGAIVDEYNYKALDYSRCLAVFGDPLQ FT LPHSLQPHYYSSRTHRYGPKLTSLLNDLFHLSITSLAPVDSLDYADPFAVDPSGFTIAD FT EEVYNFVSQQVPGTLLPLDTVGLEYSSVSFYCSDLRSCVVLRPLSSLHRSHPRQGQPHH FT LRFQCQV" FT CDS 5010..5348 FT /codon_start=1 FT /note="triple gene block 2" FT /db_xref="GOA:Q76SQ1" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q76SQ1" FT /protein_id="AAB57881.1" FT /translation="MPGLVPPPDHSKSLFVLAIGITVVSALFVLKSHTFPIAGDNIHRF FT PSGGQYKDGTKQINYCPPTHARYPKYPDYKWLAATAAIVIPLCLYISYHPGNNIRRICP FT CCNTYHHP" FT CDS 5203..5478 FT /codon_start=1 FT /note="triple gene block 3" FT /db_xref="GOA:O10690" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:O10690" FT /protein_id="AAB57882.1" FT /translation="MLGTRNILTTSGLPLPPPSSSLSAYIFPTILAIIFAVFALVAIHI FT TTPEPFCTIHIDGASITITNCPDPAAILNKVAIGPWRGLSYHNNLK" FT CDS 5481..6152 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:O10691" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:O10691" FT /protein_id="AAB57883.1" FT /translation="MGEPTPAPAATYSAADPTSAPKLADLAAIKYSPVTSSIATPEEIK FT AITQLWVNNLGLPADTVGTAAIDLARAYADVGASKNATLLGFCPTKPDVRRAALAAQIF FT VANVTPRQFCAYYAKVVWNLMLATNDPPANWAKAGFQEDTRFAAFDFFDAVDSTAALEP FT AEWQRRPTDRERAAHSIGKYGALARQRIQNGNLITNIAEVTKGHLGSTNTLYALPAPPT FT E" XX SQ Sequence 6227 BP; 1656 A; 1815 C; 1230 G; 1526 T; 0 other; gaaaaccaaa cctcacgtct aatccgctat ccgagcgaaa tagcagcccc agcataggca 60 atatcgcgct ccatggctcg agtacgtgac acccttgaca ggctccgtga tccgtcggtc 120 cttacctcaa ttaacgagga agcccaccga catatccgcc ctgtccttgc ctcggcactc 180 gtaaactgcc cttacgcgtt gaccgaggaa gaggccgact gtctcgaaaa tctcggcgtg 240 acagtcaatc ccttcgccat ccaaacgcat acacatgctg cagctaaaac tgttgaaaat 300 cgcatgttgg aaattgttgg cacccacctt cctaaagaac cctccacctt catattcctt 360 aagcggagca agcttcgcta cctacgacgc gccgccaaca acaaagacat atttcgaaac 420 caacatattg agcccaaaga cttattgcgt tacgatgacg agtcttgtga agtaatgcca 480 gaatgctcca caagcacagc ctacatcagc gatgctctcc atttcttgag ctacgctcag 540 cttgggaaaa tattccagaa ttctcccaag ctgaaaattc tgctggcaac cctggtcctc 600 cccgtggaag ccctccatag gcacccatct ctttatcctg ccatctatac tttgaactac 660 cacaaagatg gctttgaata tatacccggc aatcacgccg gaggtgccta cttccacgag 720 tactccactc tgcagtggct gactctcggg aaactaatta tcaacgatcc tttgaaagta 780 aagaaacccc ttactcttac cgtacagcta atagaaagtc taggggctaa ccatcttcta 840 cttatcaccc gaggggatct tcgcacaccc aaactgcgga cattcgctaa agatacccat 900 gttctactac cacaaatatt ccatcctaag ggtatgaatg cgaacaaacc attgtccaaa 960 cgtagagcta tgcagttgtg gctctacgcc aaatctgtta aagaggtgag cgaacgggat 1020 ctttatgcta aggtgaggca attgatcccg acttctgagt tagacctttt tgaccctgtg 1080 gaggtgaccc acttggtcaa ttacttacta ttcatcagtc acctttcctc cgtatcttcg 1140 tatgacgaca tcttgtcgtc taatatattc caacatttca ccattccaat caagaacaag 1200 atacgggaat tggtccaact attcaccgga gcggaccaat ttaatcaact gctcaaagct 1260 ctcgactggc aaacattttc gtactctatg ccagtagaga ccatccatac acgtgcggcc 1320 aattatcagg tcgctaaaac cgttcgcatg tgcagagacc taccatgcga tgaatatgat 1380 cgtgtaaagg atgtcctcag acagctccct gacggagtga cgttgtttga ggaaaacgac 1440 aagcaagatc cctcaagttc tgaagccgag gactctgagg atgacactga ctccgtcgac 1500 ttcaaccttc cccccactca tgacttgccc ccaaactttg atcctctaga caagggcaag 1560 tccattatcg ttgacaccga caacccttca acttccacgg cacctgccgt cacttttgct 1620 gccggtatca actcctcagc ctccacaaat atttcatttg gaagcttcac acctgaggct 1680 gaggccaccc cccctccccc catggaaaag ttaccatggg atctttggat tcccctactg 1740 gaacaacatg gctttaaagg aaagagtaag ctgtacaaac ccacgggtga actaatctgc 1800 cccataactg aaatcaaaac agttccccac tgcccctttc ccgataaagt cccggatggc 1860 tgtgtgcttg cgctcaaatc tattaagcgt ttcgccacaa aaatgactat gctcagttct 1920 cgagcttccg cctacacttc cgacattaag aatagtagaa ctgggaagct cctacccgcc 1980 atgaacatgc cctggaaagc ctctctcgcc tatgtcactc aacatggtga tagagaaatt 2040 cctggcgtcg tgatccatgg cgccggtggc tgtggcaaat cttatgccat ccaaaaatgg 2100 ttgagaagct gctctgatcc ttgtgcagct actgtggtat gcccaactct aggacgacgt 2160 aatgactggc tcaataagat cggaagctac gaacaaacga atatcaaaac tttcgagaaa 2220 gctttaattc agccagtcaa cgacgtagtt atttttgatg actacaccaa gctaccccct 2280 gggtacatcg agaccatggt gtaccatcac cacaacctcg acctgatcat attaactggg 2340 gatcctatgc agagtgccta ccatgaaact aacagggatg cctatatctc tttaatacct 2400 gatgcctctg ccagttttag tgagtactgt gagttcaaca tcaacgccac ccaccgtaat 2460 gtagctgaac tcgcttgcct ccttggcgtc tattccgaac gccaaggcaa actcgccgtc 2520 tccttcagca ccgccccact ttctaaaggt aaagtaccca ttctggtacc ctctagaatg 2580 aagcaagagg cttttgctga tgtcggcaac cgttgcatga cttatgccgg ttgccagggt 2640 ctcactgccc ctaaaatcca aattttgata gacaaccaca ctgcattctg ctctgaacaa 2700 acattataca cttgtctatc acgagctgtg gaccaaatcc acttcattaa cactggtccc 2760 aactcgcagg ctttctggac caaattggaa tcgacgccgt acctaaaagc tttcctcgat 2820 aattaccgtg aggaacaaac tgaacggcta acatctaccg ccccagagcg tgaagtccgt 2880 gagccagcgc cccccaaaac gcacatccct gtcgaaaata catctggctt acgtatttct 2940 gcacttgacc tgccggaaaa gcactctcgc gaaatcttca acaaggcgca tggcttttcc 3000 aatgctattc agggggaagg cgtagcccct atgttccagc atcaacaggc aaaggacgaa 3060 acccttttca aggctaccat agacgctaga ctctctataa cacatcctga tgaaaataaa 3120 agagagtttg ccatgaagaa agacaccggg gacgtccttt ttgtcaatta caaagctata 3180 atgaatctac cccatgagcc tgttcctttt gaacctcgtc tctggaacat ctgcaaggcc 3240 gaagtgcaga acacatacct agccaaaccc attgcaaatc ttatcaatgg taccttaagg 3300 caatcacctg actttccagc caataaaata gccttattcc tgaaatcgca atgggtaaag 3360 aaaattgaga aaattggagc cataccggtt aaacctggac agactattgc atcatttatg 3420 caagagactg ttatgctgta tggcaccatg gcacgctacc tccgtaagat gcggcaaaga 3480 tatcaacccg cacatatatt tatcaattgt gaaaagactc cggaggactt caataaattt 3540 gtacttgaac actggtcaca caagcaagtt gctcacacta atgattttac tgcttttgac 3600 caatcgcaag atgctgccat gctccaattt gaagtcatca aagctaggta cttcaatatc 3660 cccgaggatg ttatagaagg atacatccaa attaagctca ctgctgaaat cttcctcggg 3720 acactttcca tcatgcgcct atctggtgaa gggccaactt tcgacgccaa tactgaatgc 3780 tctattgcct acaatgccac cagataccat attaatgaag acgtcactca agtatacgcc 3840 ggtgacgaca tggctatgga ccatgtgtgc cctgagaaga agagcttcaa agctttggaa 3900 aagaaactga aattgacctc aaaacctctt tatccaaagc aaaaacctgg agactgggcc 3960 gatttctgcg gctggactat aacgccttat ggcatcattg agaatcctaa gaaacttgat 4020 gcatgcctac aattgcacac ccaattgggc gatgccgata aagtcgctag gtcatacgca 4080 ctcgatgcca aatatgctta tgatctgggc gatcgcattc atgagattct gaatgctgat 4140 gaaatgacca gccactttaa tgtcataaga cagttgcaca aactgcatca acaagatgtg 4200 ctggtcccac ccgagaccac cgtagccaca gcggtaaagt ctcaacctga catggaggat 4260 ctgtggctcc gtgcgcttag cttccctgac tggacggacc gcgcccaact tttaaaacgg 4320 ggttaatttt tgatggagct agcgtactta gttagattac tagagcacaa taaattcgag 4380 cgcaccaatc tgcccctttc ctcaccttta gttgtacacg gaatcgctgg cagtggaaaa 4440 tctaccatcc tcacaacttt ccatcaccat tacccggctt accctatctt ctcacacagt 4500 cccacgttgc ttgaccctag caaccgcatc taccaacagt gcatcactac tgactgggtg 4560 ccaggcggtg ctattgtaga cgagtacaat tacaaagcgc tcgactactc tcgctgtcta 4620 gccgtcttcg gtgatccact ccagcttcca cattcacttc aaccccacta ctactctagt 4680 cgcacccacc gctacgggcc caagctcact agcctactca acgacctctt ccacctttct 4740 atcacctctc ttgcccccgt cgacagcctt gattacgctg atccttttgc tgtcgacccc 4800 tctggattta ccattgctga cgaggaagtg tacaactttg tctctcaaca ggttccaggc 4860 actttgttgc cgctcgacac cgtaggttta gaatattcta gtgttagctt ttactgcagt 4920 gatctccgaa gctgtgtcgt actaaggcca ctcagcagcc ttcatcgctc tcacccgcgc 4980 caagggcaac ctcaccatct tcgatttcaa tgccaggttt agttccacca cctgaccatt 5040 ccaagtcact cttcgtccta gctataggta taactgtggt ctcagcatta tttgtgctga 5100 agtcccacac ttttccaatt gcaggcgaca acattcaccg cttcccatcc ggcggccaat 5160 ataaagacgg tactaagcag ataaactact gtccacctac tcatgctagg tacccgaaat 5220 atcctgacta caagtggctt gccgctaccg ccgccatcgt catccctctc tgcctatata 5280 tttcctacca tcctggcaat aatattcgcc gtatttgccc ttgttgcaat acatatcacc 5340 acccctgagc ccttctgtac catacacata gacggggcgt ctattactat cactaactgc 5400 cccgatcctg cagctatatt aaataaagta gctataggcc cctggcgagg gttaagttac 5460 cacaataatt tgaaataatc atgggagagc ccactccagc cccagctgcc acttactccg 5520 ctgccgaccc cacttctgca ccaaaattgg ccgacctggc tgccattaag tactcacctg 5580 tcacctcctc catcgccacc cccgaagaaa tcaaggccat aacccaattg tgggttaaca 5640 accttggcct ccccgctgac accgtaggta ccgcggccat tgacctggcc cgtgcctacg 5700 ctgacgtcgg ggcgtccaag aatgctaccc tgctcggttt ctgccctacg aaacctgatg 5760 tccgtcgcgc cgctcttgcc gcgcagatct tcgtagccaa cgtcaccccc cgccagtttt 5820 gcgcttacta cgcaaaagtg gtgtggaatc tgatgctggc cactaacgat ccgcccgcca 5880 actgggctaa ggctggtttc caggaggata cccggtttgc cgcctttgac ttcttcgatg 5940 ccgtcgattc cactgccgcg ctggagcctg ctgaatggca gcgccgccct actgaccgtg 6000 aacgtgctgc gcactcgatc gggaagtacg gcgcccttgc ccgtcagcgc atccaaaacg 6060 gcaacctcat caccaacatt gcagaggtca ccaagggcca tcttggctcc accaacaccc 6120 tctatgctct gcctgcaccc cctactgaat aacgccaaac ttaataaggc gtgtggtttt 6180 ctaaagtttg tttccactac tggcataata agtttagcca gataaat 6227 //