ID U62546; SV 1; linear; genomic RNA; STD; VRL; 3762 BP. XX AC U62546; XX DT 04-JUL-1997 (Rel. 52, Created) DT 21-MAR-2002 (Rel. 71, Last updated, Version 3) XX DE Tobacco necrosis virus strain D, complete genome. XX KW . XX OS Tobacco necrosis virus D OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Betanecrovirus. XX RN [1] RP 1-3762 RX PUBMED; 9191913. RA Molnar A., Havelda Z., Dalmay T., Szutorisz H., Burgyan J.; RT "Complete nucleotide sequence of tobacco necrosis virus strain DH and genes RT required for RNA replication and virus movement"; RL J. Gen. Virol. 78(Pt 6):1235-1239(1997). XX RN [2] RP 1-3762 RA Molnar A.; RT ; RL Submitted (27-JUN-1996) to the INSDC. RL Attila Molnar, Agricultural Biotechnology Center, Institute for Plant RL Sciences, 4. Szent-Gyorgyi, Godollo, H-2101, Hungary XX DR MD5; c3e96cc15424e7536d9af038963baf63. DR EuropePMC; PMC110069; 9573276. DR EuropePMC; PMC112128; 10864632. XX FH Key Location/Qualifiers FH FT source 1..3762 FT /organism="Tobacco necrosis virus D" FT /strain="D" FT /isolate="Hungarian" FT /mol_type="genomic RNA" FT /clone="A-172" FT /db_xref="taxon:12056" FT CDS 39..647 FT /codon_start=1 FT /product="22 kDa protein" FT /note="TNV-DH ORF1" FT /db_xref="GOA:O41346" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:O41346" FT /protein_id="AAC57947.1" FT /translation="MESLPVVLLSLISKTIVLLCSFLTLIIQNSTAVSWACICIWLCYV FT AFRYVFKIKVTIHPAAVETFETMVRKFQAESMFAEETIPCMASVGDKDADLTPDPQRED FT IKIVKSSRRVSYPVRVAHVAKAQVGLLPNSRANELVYSRLCREEMVKHGVRPSHIAHMV FT PLAVAACFIPLDSDFLAASIRQGDGMRERRALIGASWEK" FT CDS 39..2216 FT /codon_start=1 FT /transl_except=(pos:645..647,aa:OTHER) FT /product="82 kDa protein" FT /function="RNA dependent RNA polymerase" FT /note="TNV-DH ORF2; readthrough stop codon" FT /db_xref="GOA:O41347" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:O41347" FT /protein_id="AAC57946.1" FT /translation="MESLPVVLLSLISKTIVLLCSFLTLIIQNSTAVSWACICIWLCYV FT AFRYVFKIKVTIHPAAVETFETMVRKFQAESMFAEETIPCMASVGDKDADLTPDPQRED FT IKIVKSSRRVSYPVRVAHVAKAQVGLLPNSRANELVYSRLCREEMVKHGVRPSHIAHMV FT PLAVAACFIPLDSDFLAASIRQGDGMRERRALIGASWEKXGGLLVTSGFTTPTWRGDPR FT GMLVTKGPPLAKPRKLYRFTGMGTHIRYGVHDHSLGNVRRGLVERLYMVEVKGELKPTP FT KPTPGAFGQLSRFNRKLGVHLPKTTRLTPKEFLGFYTGRKLERYQRAVESLEMHPVREK FT DAWLSTFVKAEKLNITAKPDPAPRVIQPRDPRYNVEVGRYLRHSEEMLFKAINKTFGGR FT TIFKGLSSDQAGVEMKELWDSFKDPVGIGMDASRFDQHISKDALEFEHKMWLSMFPVSE FT RKELARLLSWQINNRGLARCPDGEIRYRVEGCRMSGDMNTSSGNCYIMCATVHNWCSEV FT KKLKHFRLANNGDDCMLVVERCDEESVREGLIEYYTTLGFTMKVEPTVDVLERVEFCQT FT RPVLVNGAYRMVRNLHQSMSKDLHSLHDLGSRVSREAWVTAVGTGGRCMNDGVPVLKEF FT FKQFPDYNLGLKKNSDMAQKLTEDWRYKFNRTSAFQDVTPSQETRYSFWLAFGILPDEQ FT IALENGFSPLRVDIIDEQIQEEVSLLQFSGA" FT CDS 2213..2401 FT /codon_start=1 FT /product="7 kDa protein" FT /note="TNV-DH ORF3" FT /db_xref="UniProtKB/TrEMBL:O41348" FT /protein_id="AAC57948.1" FT /translation="MKTHQFHLKIESRWKILKMSVVVGKTESIVGIGSRRAAIRKLARL FT PCVKRVTLSKIWVHQCL" FT CDS 2251..2448 FT /codon_start=1 FT /product="7 kDa protein" FT /note="TNV-DH ORF4" FT /db_xref="InterPro:IPR035284" FT /db_xref="UniProtKB/TrEMBL:O41349" FT /protein_id="AAC57949.1" FT /translation="MENSENVRSGRQNREYSRDRQQEGGYKEISKAAVRKEGDVKQDMG FT PSVSMTVVGEKVEFTQHFHF" FT CDS 2448..2648 FT /codon_start=1 FT /product="7 kDa protein" FT /note="TNV-DH ORF5" FT /db_xref="GOA:O41350" FT /db_xref="UniProtKB/TrEMBL:O41350" FT /protein_id="AAC57951.1" FT /translation="MKYIIVQQNDPLPLLGVWIIVIIIIAVIGLLNQSPPERPYQTFKE FT DNSKIQYITIGGPTTTKVSTN" FT CDS 2651..3457 FT /codon_start=1 FT /product="29 kDa coat protein" FT /note="TNV-DH ORF6" FT /db_xref="GOA:O41351" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:O41351" FT /protein_id="AAC57950.1" FT /translation="MPKRGRVGLAESFQSKSKKQKEAEYNAFQREKMERALVNNATAAR FT KGSGMSFRPLTVPVAGSVIYSRPRVPQVRTNQMSTFVVNTELVANITLAAAGAFSFTTQ FT PLIPSFGSWLANIADLYSKWRWISCSVVYIPKCPTSTQGSVVMAIVYDAQDTVPTTRTQ FT VSQCYQSITFPPYAGYGGASALNHKGSSGESLVSTLDTNRVDKKWYSTIGNAAFTALTS FT IDKNQFCPATAIIAGDGGPVAATAVGDIFMRYEIEFIEPVNPTINI" XX SQ Sequence 3762 BP; 1007 A; 826 C; 950 G; 978 T; 1 other; nataccttac cagtatctca gtgattaagt aatcagctat ggaatcctta ccagtcgttc 60 ttctttccct aatctctaaa acgattgtgc tactctgtag tttcttgacc cttataatcc 120 aaaattccac cgctgtttct tgggcatgca tatgcatctg gctttgttac gtagctttcc 180 gttacgtatt caaaatcaaa gttaccatcc atcccgctgc agttgaaacg ttcgagacaa 240 tggttcgcaa atttcaggct gaatcaatgt tcgctgagga aaccattcca tgcatggcaa 300 gtgtaggtga caaggacgct gatctcaccc ccgacccaca aagagaggat ataaaaattg 360 tgaagtcgtc gaggagagtg agttaccccg tccgtgtagc acatgtagct aaggcacagg 420 tgggcctctt acccaactct agagccaacg agctagtgta ctctcgtctc tgcagggagg 480 agatggtcaa acatggggtt cgaccaagtc atattgccca catggttcca ttggcggtgg 540 cggcatgctt catcccgttg gatagcgact ttttagccgc ttccatcaga cagggtgatg 600 gcatgcggga gaggagggcc cttattgggg cctcatggga gaaataggga ggcctattag 660 tcacaagcgg attcaccact cctacttgga gaggtgatcc gaggggtatg cttgtgacta 720 aaggacctcc cctcgcaaaa ccccgtaaat tgtaccgatt tactgggatg ggaacacata 780 ttcggtacgg agtgcatgat cactcattgg gcaatgttcg gcggggacta gtggaacgat 840 tatatatggt tgaagttaaa ggagaactta aacctactcc aaagcccacc cccggagcgt 900 tcggccaact gtcccggttc aaccgcaaac ttggtgttca tcttcctaag accacccgat 960 tgacacccaa ggaattcctt gggttttata cgggtcgcaa gttagagaga taccaaagag 1020 cagttgagtc gttagagatg catcccgtaa gggaaaagga tgcttggctt agcacgttcg 1080 tgaaggctga aaaactgaat atcacagcca aacccgaccc agctccacgg gtgatacaac 1140 cgagggatcc tcggtataat gtggaggttg ggcgctattt gcgacatagt gaggaaatgt 1200 tgttcaaggc cattaataaa acatttggcg gtaggactat tttcaaggga ctcagctctg 1260 atcaagctgg tgtcgagatg aaggaactct gggattcatt caaggatcca gtgggcatag 1320 ggatggatgc ctcgaggttt gaccagcaca tctccaagga tgccttggag tttgaacata 1380 agatgtggct aagcatgttc cctgtttccg aaaggaagga acttgccagg ctgcttagct 1440 ggcaaatcaa taatcgaggc cttgcccgat gtccagatgg ggagattaga tacagagttg 1500 agggatgcag gatgtctggt gacatgaata cctctagcgg taactgctac atcatgtgtg 1560 caactgtgca taattggtgt agtgaggtta agaaactcaa gcattttcga ttagccaata 1620 atggtgatga ttgtatgctt gttgttgaac gctgtgatga ggagtctgtc cgagagggct 1680 taattgagta ctacaccaca cttgggttca ctatgaaggt ggagcctaca gtggatgtgt 1740 tggaaagagt tgagttctgt cagactaggc ctgttctggt gaatggagct taccgaatgg 1800 ttcgcaacct tcatcagagc atgtcgaaag atctgcactc ccttcatgac cttggaagtc 1860 gtgtatccag agaggcctgg gtaacagccg taggaacagg aggccgatgt atgaatgatg 1920 gggtgcctgt gttaaaagaa ttctttaagc aattcccaga ttataacttg gggttaaaga 1980 agaattccga tatggcacag aaattgacag aggactggag gtacaagttt aatcggacaa 2040 gtgcctttca ggatgtcaca ccctcccagg aaactcggta ctccttttgg ctagcctttg 2100 ggatactacc tgatgaacaa attgccctgg agaatggctt cagccccttg agggttgata 2160 tcatagatga gcagatccag gaggaggttt ccctcctcca gttctctggg gcatgaaaac 2220 tcaccaattt caccttaaga tcgagtctag atggaaaatt ctgaaaatgt ccgtagtggt 2280 cggcaaaacc gagagtatag tagggatagg cagcaggagg gcggctataa ggaaattagc 2340 aaggctgccg tgcgtaaaga gggtgacgtt aagcaagata tgggtccatc agtgtctatg 2400 actgtagttg gggagaaagt tgaattcacc cagcactttc atttctgatg aaatacataa 2460 ttgttcagca gaatgatcct ttaccccttt tgggggtttg gatcatagtc atcataatta 2520 ttgcagttat tggtttattg aaccaaagcc ctcctgaaag accttaccaa actttcaaag 2580 aagataattc taagatacaa tacattacta tcggcggacc cactactaca aaagtgtcaa 2640 caaattaata atgcctaaac gaggaagagt tggcctggct gaatcttttc agtccaagtc 2700 aaagaagcag aaggaggctg agtacaatgc ctttcaaagg gagaaaatgg aacgcgcact 2760 tgtcaacaat gcgaccgcag cgagaaaggg ctctggaatg tctttcagac cactcactgt 2820 ccctgttgct gggtcagtta tatatagcag accccgagtg cctcaggttc gcaccaatca 2880 gatgtccacc ttcgtggtca atactgaatt ggtagccaat attactcttg ctgctgctgg 2940 agctttcagc ttcacaacac agccattgat acccagcttt ggatcttggt tggcaaacat 3000 tgctgatctt tactctaagt ggagatggat tagttgttct gtggtataca tccccaaatg 3060 tcccacttcc actcaaggga gtgtggttat ggcaattgtg tacgatgcac aggacactgt 3120 acccaccact cggacccagg tctcacaatg ttaccagtcc atcactttcc caccgtatgc 3180 tggatatggt ggagcctctg cactgaacca caagggttct agtggtgaat cgttggtgtc 3240 tactcttgac accaatagag tggataagaa atggtacagc accattggta acgcagcctt 3300 tactgctctc acatcaatag ataagaatca gttctgtcca gccacagcaa tcattgctgg 3360 ggatggtgga cctgttgccg ctactgctgt gggtgatatc tttatgcgct acgagattga 3420 gttcattgaa ccagtcaatc ccaccattaa catttagtcg ctttcataga tccgtcttcc 3480 cagagacgtt aagaagaagc tggagaaaaa tattaggtta gaagcttggg cgtgacaaac 3540 ccaagttgca tctcttacgt ggttaatcac actgtatgtt gacgaatagg ccggatcctg 3600 ggaaacaggt ttaacgggct ctctgtggtg gagggccgac gcatcaccta tttgtgctcc 3660 aacagtggtt gtcatcacgt gtcctgacat ggctccatgc gacagcatgg gggggtccag 3720 agtcagtccc ctctttattt acctaggatt tcctaggaac cc 3762 //